Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03035

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03025 and LRK53_RS03030 overlap by 4 nucleotidesLRK53_RS03030 and LRK53_RS03035 are separated by 28 nucleotidesLRK53_RS03035 and LRK53_RS03040 are separated by 148 nucleotides LRK53_RS03025: LRK53_RS03025 - pimeloyl-ACP methyl ester esterase BioH, at 703,021 to 703,806 _RS03025 LRK53_RS03030: LRK53_RS03030 - sulfurtransferase, at 703,803 to 704,738 _RS03030 LRK53_RS03035: LRK53_RS03035 - 8-amino-7-oxononanoate synthase, at 704,767 to 705,972 _RS03035 LRK53_RS03040: LRK53_RS03040 - biotin synthase BioB, at 706,121 to 707,164 _RS03040 Position (kb) 704 705 706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 703.796 kb on + strandat 703.796 kb on + strandat 703.796 kb on + strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.797 kb on - strandat 703.819 kb on + strandat 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.101 kb on + strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.102 kb on - strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.128 kb on + strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.129 kb on - strand, within LRK53_RS03030at 704.197 kb on + strand, within LRK53_RS03030at 704.197 kb on + strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.198 kb on - strand, within LRK53_RS03030at 704.221 kb on + strand, within LRK53_RS03030at 704.222 kb on - strand, within LRK53_RS03030at 704.222 kb on - strand, within LRK53_RS03030at 704.317 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.558 kb on + strand, within LRK53_RS03030at 704.559 kb on - strand, within LRK53_RS03030at 704.559 kb on - strand, within LRK53_RS03030at 704.713 kb on + strandat 704.713 kb on + strandat 704.713 kb on + strandat 704.713 kb on + strandat 704.714 kb on - strandat 704.768 kb on + strandat 704.768 kb on + strandat 704.769 kb on - strandat 704.769 kb on - strandat 704.769 kb on - strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.770 kb on + strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 704.771 kb on - strandat 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.164 kb on + strand, within LRK53_RS03035at 705.165 kb on - strand, within LRK53_RS03035at 705.165 kb on - strand, within LRK53_RS03035at 705.165 kb on - strand, within LRK53_RS03035at 705.165 kb on - strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.170 kb on + strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.171 kb on - strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.638 kb on + strand, within LRK53_RS03035at 705.639 kb on - strand, within LRK53_RS03035at 705.639 kb on - strand, within LRK53_RS03035at 705.639 kb on - strand, within LRK53_RS03035at 705.639 kb on - strand, within LRK53_RS03035at 705.818 kb on + strand, within LRK53_RS03035at 705.818 kb on + strand, within LRK53_RS03035at 705.819 kb on - strand, within LRK53_RS03035at 705.819 kb on - strand, within LRK53_RS03035at 705.819 kb on - strand, within LRK53_RS03035at 706.122 kb on + strandat 706.122 kb on + strandat 706.122 kb on + strandat 706.122 kb on + strandat 706.122 kb on + strandat 706.122 kb on + strandat 706.123 kb on - strandat 706.123 kb on - strandat 706.299 kb on + strand, within LRK53_RS03040at 706.299 kb on + strand, within LRK53_RS03040at 706.300 kb on - strand, within LRK53_RS03040at 706.622 kb on + strand, within LRK53_RS03040at 706.622 kb on + strand, within LRK53_RS03040at 706.622 kb on + strand, within LRK53_RS03040at 706.622 kb on + strand, within LRK53_RS03040at 706.623 kb on - strand, within LRK53_RS03040at 706.623 kb on - strand, within LRK53_RS03040at 706.647 kb on + strand, within LRK53_RS03040at 706.647 kb on + strand, within LRK53_RS03040at 706.658 kb on - strand, within LRK53_RS03040at 706.674 kb on + strand, within LRK53_RS03040at 706.674 kb on + strand, within LRK53_RS03040at 706.675 kb on - strand, within LRK53_RS03040at 706.675 kb on - strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.707 kb on + strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.708 kb on - strand, within LRK53_RS03040at 706.710 kb on + strand, within LRK53_RS03040at 706.710 kb on + strand, within LRK53_RS03040at 706.710 kb on + strand, within LRK53_RS03040at 706.710 kb on + strand, within LRK53_RS03040at 706.711 kb on - strand, within LRK53_RS03040at 706.711 kb on - strand, within LRK53_RS03040at 706.711 kb on - strand, within LRK53_RS03040at 706.711 kb on - strand, within LRK53_RS03040at 706.926 kb on + strand, within LRK53_RS03040at 706.960 kb on - strand, within LRK53_RS03040at 706.960 kb on - strand, within LRK53_RS03040at 706.960 kb on - strand, within LRK53_RS03040

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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703,796 + -1.5
703,796 + -0.6
703,796 + -1.2
703,797 - +1.0
703,797 - -0.0
703,797 - +0.4
703,797 - -0.0
703,797 - -0.9
703,819 + -0.6
704,101 + LRK53_RS03030 0.32 -1.0
704,101 + LRK53_RS03030 0.32 -1.0
704,101 + LRK53_RS03030 0.32 +1.0
704,101 + LRK53_RS03030 0.32 +0.6
704,102 - LRK53_RS03030 0.32 -0.3
704,102 - LRK53_RS03030 0.32 -2.7
704,102 - LRK53_RS03030 0.32 -0.9
704,102 - LRK53_RS03030 0.32 +1.0
704,102 - LRK53_RS03030 0.32 -2.1
704,102 - LRK53_RS03030 0.32 +0.4
704,102 - LRK53_RS03030 0.32 -0.0
704,102 - LRK53_RS03030 0.32 -2.4
704,128 + LRK53_RS03030 0.35 -2.6
704,128 + LRK53_RS03030 0.35 -1.8
704,128 + LRK53_RS03030 0.35 -1.4
704,128 + LRK53_RS03030 0.35 -1.8
704,128 + LRK53_RS03030 0.35 +1.6
704,128 + LRK53_RS03030 0.35 -0.5
704,128 + LRK53_RS03030 0.35 +0.2
704,128 + LRK53_RS03030 0.35 -0.3
704,129 - LRK53_RS03030 0.35 -0.6
704,129 - LRK53_RS03030 0.35 -0.0
704,129 - LRK53_RS03030 0.35 +0.3
704,129 - LRK53_RS03030 0.35 -1.3
704,129 - LRK53_RS03030 0.35 -1.3
704,129 - LRK53_RS03030 0.35 -1.3
704,129 - LRK53_RS03030 0.35 -0.5
704,129 - LRK53_RS03030 0.35 -1.0
704,197 + LRK53_RS03030 0.42 +2.0
704,197 + LRK53_RS03030 0.42 -2.0
704,198 - LRK53_RS03030 0.42 -0.0
704,198 - LRK53_RS03030 0.42 -0.9
704,198 - LRK53_RS03030 0.42 -0.7
704,198 - LRK53_RS03030 0.42 -1.4
704,198 - LRK53_RS03030 0.42 -1.0
704,221 + LRK53_RS03030 0.45 -1.3
704,222 - LRK53_RS03030 0.45 -1.2
704,222 - LRK53_RS03030 0.45 +1.0
704,317 + LRK53_RS03030 0.55 +1.6
704,558 + LRK53_RS03030 0.81 -0.8
704,558 + LRK53_RS03030 0.81 -0.9
704,558 + LRK53_RS03030 0.81 -1.0
704,558 + LRK53_RS03030 0.81 -0.5
704,558 + LRK53_RS03030 0.81 +1.6
704,558 + LRK53_RS03030 0.81 -0.0
704,559 - LRK53_RS03030 0.81 +0.1
704,559 - LRK53_RS03030 0.81 -0.0
704,713 + -0.3
704,713 + +0.2
704,713 + -0.6
704,713 + -2.7
704,714 - -1.8
704,768 + -1.0
704,768 + -0.1
704,769 - -1.8
704,769 - -1.0
704,769 - +2.0
704,770 + -0.6
704,770 + -0.5
704,770 + -1.3
704,770 + -1.6
704,770 + -0.8
704,770 + -0.0
704,770 + -1.3
704,770 + -2.5
704,770 + +2.0
704,770 + -2.1
704,770 + -0.0
704,770 + +0.3
704,770 + -1.8
704,770 + -0.2
704,771 - +1.0
704,771 - -0.9
704,771 - +0.8
704,771 - -1.0
704,771 - -0.5
704,771 - +1.0
704,771 - -1.4
704,771 - -0.0
704,771 - +2.0
704,771 - +0.1
705,164 + LRK53_RS03035 0.33 -1.3
705,164 + LRK53_RS03035 0.33 -0.0
705,164 + LRK53_RS03035 0.33 +1.6
705,164 + LRK53_RS03035 0.33 -1.0
705,164 + LRK53_RS03035 0.33 +1.0
705,164 + LRK53_RS03035 0.33 -0.6
705,164 + LRK53_RS03035 0.33 -0.0
705,164 + LRK53_RS03035 0.33 -0.0
705,164 + LRK53_RS03035 0.33 -1.7
705,164 + LRK53_RS03035 0.33 -2.1
705,164 + LRK53_RS03035 0.33 -0.6
705,164 + LRK53_RS03035 0.33 -1.8
705,164 + LRK53_RS03035 0.33 +0.3
705,164 + LRK53_RS03035 0.33 +0.5
705,164 + LRK53_RS03035 0.33 -2.3
705,165 - LRK53_RS03035 0.33 +1.0
705,165 - LRK53_RS03035 0.33 +0.4
705,165 - LRK53_RS03035 0.33 +1.0
705,165 - LRK53_RS03035 0.33 -2.9
705,170 + LRK53_RS03035 0.33 -0.8
705,170 + LRK53_RS03035 0.33 -2.0
705,170 + LRK53_RS03035 0.33 +0.2
705,170 + LRK53_RS03035 0.33 -1.0
705,170 + LRK53_RS03035 0.33 -0.0
705,170 + LRK53_RS03035 0.33 -0.6
705,170 + LRK53_RS03035 0.33 +1.0
705,170 + LRK53_RS03035 0.33 -1.0
705,171 - LRK53_RS03035 0.33 -1.0
705,171 - LRK53_RS03035 0.33 -1.0
705,171 - LRK53_RS03035 0.33 -0.3
705,171 - LRK53_RS03035 0.33 -0.2
705,171 - LRK53_RS03035 0.33 -1.3
705,171 - LRK53_RS03035 0.33 +1.0
705,171 - LRK53_RS03035 0.33 -1.0
705,638 + LRK53_RS03035 0.72 -1.5
705,638 + LRK53_RS03035 0.72 -0.0
705,638 + LRK53_RS03035 0.72 -1.0
705,638 + LRK53_RS03035 0.72 -0.6
705,638 + LRK53_RS03035 0.72 -0.8
705,638 + LRK53_RS03035 0.72 -1.8
705,638 + LRK53_RS03035 0.72 -1.6
705,639 - LRK53_RS03035 0.72 -0.6
705,639 - LRK53_RS03035 0.72 +1.0
705,639 - LRK53_RS03035 0.72 -0.6
705,639 - LRK53_RS03035 0.72 +0.4
705,818 + LRK53_RS03035 0.87 -0.0
705,818 + LRK53_RS03035 0.87 -1.3
705,819 - LRK53_RS03035 0.87 -1.0
705,819 - LRK53_RS03035 0.87 -1.0
705,819 - LRK53_RS03035 0.87 +0.7
706,122 + -0.0
706,122 + -0.0
706,122 + -0.0
706,122 + -0.6
706,122 + -0.6
706,122 + -0.0
706,123 - +0.4
706,123 - -0.6
706,299 + LRK53_RS03040 0.17 -1.0
706,299 + LRK53_RS03040 0.17 +1.0
706,300 - LRK53_RS03040 0.17 +1.0
706,622 + LRK53_RS03040 0.48 -0.0
706,622 + LRK53_RS03040 0.48 +1.0
706,622 + LRK53_RS03040 0.48 -0.8
706,622 + LRK53_RS03040 0.48 -2.1
706,623 - LRK53_RS03040 0.48 -0.6
706,623 - LRK53_RS03040 0.48 -0.6
706,647 + LRK53_RS03040 0.50 -0.6
706,647 + LRK53_RS03040 0.50 -0.8
706,658 - LRK53_RS03040 0.51 -2.5
706,674 + LRK53_RS03040 0.53 -1.6
706,674 + LRK53_RS03040 0.53 -1.8
706,675 - LRK53_RS03040 0.53 -0.0
706,675 - LRK53_RS03040 0.53 -0.6
706,707 + LRK53_RS03040 0.56 -0.6
706,707 + LRK53_RS03040 0.56 -0.6
706,707 + LRK53_RS03040 0.56 -0.1
706,707 + LRK53_RS03040 0.56 -0.6
706,707 + LRK53_RS03040 0.56 -0.0
706,707 + LRK53_RS03040 0.56 +1.0
706,707 + LRK53_RS03040 0.56 -0.9
706,707 + LRK53_RS03040 0.56 -1.2
706,707 + LRK53_RS03040 0.56 -0.5
706,707 + LRK53_RS03040 0.56 -0.6
706,707 + LRK53_RS03040 0.56 +0.3
706,707 + LRK53_RS03040 0.56 -4.0
706,707 + LRK53_RS03040 0.56 -0.6
706,707 + LRK53_RS03040 0.56 -1.4
706,707 + LRK53_RS03040 0.56 +1.0
706,707 + LRK53_RS03040 0.56 -0.0
706,707 + LRK53_RS03040 0.56 -0.4
706,707 + LRK53_RS03040 0.56 -0.8
706,707 + LRK53_RS03040 0.56 -0.6
706,708 - LRK53_RS03040 0.56 -1.0
706,708 - LRK53_RS03040 0.56 -0.2
706,708 - LRK53_RS03040 0.56 -2.3
706,708 - LRK53_RS03040 0.56 +0.4
706,708 - LRK53_RS03040 0.56 -0.6
706,708 - LRK53_RS03040 0.56 +1.0
706,708 - LRK53_RS03040 0.56 -1.2
706,708 - LRK53_RS03040 0.56 -0.0
706,708 - LRK53_RS03040 0.56 -1.6
706,708 - LRK53_RS03040 0.56 -0.0
706,708 - LRK53_RS03040 0.56 -0.6
706,708 - LRK53_RS03040 0.56 -0.6
706,708 - LRK53_RS03040 0.56 -2.2
706,708 - LRK53_RS03040 0.56 -0.9
706,708 - LRK53_RS03040 0.56 -1.5
706,710 + LRK53_RS03040 0.56 -0.0
706,710 + LRK53_RS03040 0.56 -0.7
706,710 + LRK53_RS03040 0.56 -1.1
706,710 + LRK53_RS03040 0.56 -1.0
706,711 - LRK53_RS03040 0.57 -1.0
706,711 - LRK53_RS03040 0.57 +2.0
706,711 - LRK53_RS03040 0.57 -1.0
706,711 - LRK53_RS03040 0.57 +1.0
706,926 + LRK53_RS03040 0.77 -1.7
706,960 - LRK53_RS03040 0.80 -0.9
706,960 - LRK53_RS03040 0.80 +2.0
706,960 - LRK53_RS03040 0.80 -0.0

Or see this region's nucleotide sequence