Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18690 and LRK53_RS18695 are separated by 84 nucleotides LRK53_RS18695 and LRK53_RS18700 are separated by 97 nucleotides LRK53_RS18700 and LRK53_RS18705 are separated by 147 nucleotides
LRK53_RS18690: LRK53_RS18690 - hypothetical protein, at 126,220 to 126,939
_RS18690
LRK53_RS18695: LRK53_RS18695 - hypothetical protein, at 127,024 to 127,788
_RS18695
LRK53_RS18700: LRK53_RS18700 - H-NS histone family protein, at 127,886 to 128,320
_RS18700
LRK53_RS18705: LRK53_RS18705 - hypothetical protein, at 128,468 to 129,379
_RS18705
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 126.915 kb on + strand at 126.915 kb on + strand at 126.916 kb on - strand at 126.916 kb on - strand at 126.916 kb on - strand at 126.916 kb on - strand at 127.126 kb on + strand, within LRK53_RS18695 at 127.126 kb on + strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.127 kb on - strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.147 kb on + strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.148 kb on - strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.199 kb on + strand, within LRK53_RS18695 at 127.200 kb on - strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.274 kb on + strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.275 kb on - strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.635 kb on + strand, within LRK53_RS18695 at 127.636 kb on - strand, within LRK53_RS18695 at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.821 kb on + strand at 127.826 kb on + strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.830 kb on - strand at 127.880 kb on + strand at 127.880 kb on + strand at 127.881 kb on - strand at 127.881 kb on - strand at 127.936 kb on - strand, within LRK53_RS18700 at 127.936 kb on - strand, within LRK53_RS18700 at 128.108 kb on + strand, within LRK53_RS18700 at 128.109 kb on - strand, within LRK53_RS18700 at 128.221 kb on + strand, within LRK53_RS18700 at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.499 kb on - strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.909 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 129.006 kb on - strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.169 kb on - strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.173 kb on - strand, within LRK53_RS18705
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 126,915 + -1.3 126,915 + +0.3 126,916 - -1.3 126,916 - -0.6 126,916 - -0.1 126,916 - -2.1 127,126 + LRK53_RS18695 0.13 -0.9 127,126 + LRK53_RS18695 0.13 -0.3 127,127 - LRK53_RS18695 0.13 +0.2 127,127 - LRK53_RS18695 0.13 -0.9 127,127 - LRK53_RS18695 0.13 +1.3 127,127 - LRK53_RS18695 0.13 -0.8 127,127 - LRK53_RS18695 0.13 -0.7 127,147 + LRK53_RS18695 0.16 -0.2 127,147 + LRK53_RS18695 0.16 -0.7 127,147 + LRK53_RS18695 0.16 -0.1 127,147 + LRK53_RS18695 0.16 -0.8 127,147 + LRK53_RS18695 0.16 -1.3 127,148 - LRK53_RS18695 0.16 -1.6 127,148 - LRK53_RS18695 0.16 -0.1 127,148 - LRK53_RS18695 0.16 +0.7 127,148 - LRK53_RS18695 0.16 -2.1 127,148 - LRK53_RS18695 0.16 -0.1 127,148 - LRK53_RS18695 0.16 -0.8 127,199 + LRK53_RS18695 0.23 -1.4 127,199 + LRK53_RS18695 0.23 -2.3 127,199 + LRK53_RS18695 0.23 -1.0 127,199 + LRK53_RS18695 0.23 -1.0 127,199 + LRK53_RS18695 0.23 -0.8 127,200 - LRK53_RS18695 0.23 -0.3 127,274 + LRK53_RS18695 0.33 +0.8 127,274 + LRK53_RS18695 0.33 -0.1 127,274 + LRK53_RS18695 0.33 +0.7 127,275 - LRK53_RS18695 0.33 -1.0 127,275 - LRK53_RS18695 0.33 -1.1 127,275 - LRK53_RS18695 0.33 -0.3 127,523 + LRK53_RS18695 0.65 -0.0 127,523 + LRK53_RS18695 0.65 -0.9 127,524 - LRK53_RS18695 0.65 -1.2 127,524 - LRK53_RS18695 0.65 -1.1 127,635 + LRK53_RS18695 0.80 -1.2 127,636 - LRK53_RS18695 0.80 +0.1 127,788 + -0.5 127,788 + -1.0 127,788 + +0.4 127,788 + -1.3 127,788 + -0.5 127,788 + +0.6 127,788 + -0.7 127,788 + -1.3 127,788 + -1.8 127,788 + -0.7 127,788 + -0.3 127,788 + -1.0 127,788 + +0.7 127,788 + -0.4 127,788 + -1.5 127,789 - +0.1 127,789 - -0.9 127,789 - +0.4 127,789 - -0.7 127,789 - -1.2 127,789 - -2.3 127,789 - -1.3 127,789 - -0.1 127,789 - -1.1 127,789 - -0.6 127,789 - -1.1 127,789 - -2.5 127,789 - -0.5 127,789 - -1.1 127,789 - -1.8 127,789 - -0.5 127,789 - -0.6 127,821 + +0.7 127,826 + +0.8 127,827 - -1.9 127,827 - -0.2 127,827 - -0.3 127,827 - -0.7 127,827 - +0.7 127,830 - -0.9 127,880 + -0.3 127,880 + -1.0 127,881 - -1.3 127,881 - +1.4 127,936 - LRK53_RS18700 0.11 -1.0 127,936 - LRK53_RS18700 0.11 -1.2 128,108 + LRK53_RS18700 0.51 -1.4 128,109 - LRK53_RS18700 0.51 -1.3 128,221 + LRK53_RS18700 0.77 -0.6 128,318 + -1.7 128,318 + -0.6 128,318 + -1.8 128,318 + -0.4 128,319 - -2.5 128,319 - -0.8 128,319 - -0.0 128,319 - +2.3 128,413 + -0.7 128,413 + +0.7 128,413 + -1.1 128,413 + +0.7 128,414 - -2.1 128,414 - -0.4 128,414 - +0.7 128,498 + -0.8 128,498 + -0.2 128,498 + +1.0 128,499 - -0.7 128,540 + +1.1 128,540 + -1.3 128,540 + -1.5 128,541 - +0.4 128,541 - -2.0 128,541 - -0.6 128,541 - +0.4 128,541 - +0.3 128,629 + LRK53_RS18705 0.18 -0.7 128,629 + LRK53_RS18705 0.18 -0.4 128,629 + LRK53_RS18705 0.18 +0.7 128,629 + LRK53_RS18705 0.18 -1.8 128,629 + LRK53_RS18705 0.18 -1.0 128,629 + LRK53_RS18705 0.18 -2.5 128,629 + LRK53_RS18705 0.18 -0.3 128,629 + LRK53_RS18705 0.18 -1.2 128,630 - LRK53_RS18705 0.18 +0.5 128,630 - LRK53_RS18705 0.18 -0.9 128,630 - LRK53_RS18705 0.18 -1.3 128,630 - LRK53_RS18705 0.18 +1.0 128,630 - LRK53_RS18705 0.18 -0.3 128,630 - LRK53_RS18705 0.18 -0.1 128,700 + LRK53_RS18705 0.25 -0.3 128,700 + LRK53_RS18705 0.25 +0.3 128,728 + LRK53_RS18705 0.29 -0.0 128,728 + LRK53_RS18705 0.29 -0.9 128,728 + LRK53_RS18705 0.29 -0.9 128,728 + LRK53_RS18705 0.29 -0.3 128,728 + LRK53_RS18705 0.29 +3.3 128,728 + LRK53_RS18705 0.29 -1.1 128,728 + LRK53_RS18705 0.29 -0.3 128,728 + LRK53_RS18705 0.29 -1.6 128,729 - LRK53_RS18705 0.29 -0.9 128,729 - LRK53_RS18705 0.29 -1.5 128,729 - LRK53_RS18705 0.29 -0.5 128,729 - LRK53_RS18705 0.29 +2.3 128,729 - LRK53_RS18705 0.29 -0.8 128,909 + LRK53_RS18705 0.48 -1.6 128,929 + LRK53_RS18705 0.51 -0.6 128,929 + LRK53_RS18705 0.51 +0.5 128,929 + LRK53_RS18705 0.51 -1.1 128,929 + LRK53_RS18705 0.51 +0.1 128,929 + LRK53_RS18705 0.51 +0.7 128,929 + LRK53_RS18705 0.51 -1.1 128,929 + LRK53_RS18705 0.51 -1.9 128,930 - LRK53_RS18705 0.51 -1.5 128,930 - LRK53_RS18705 0.51 +0.3 128,930 - LRK53_RS18705 0.51 -0.6 128,930 - LRK53_RS18705 0.51 -0.2 128,930 - LRK53_RS18705 0.51 -1.1 129,006 - LRK53_RS18705 0.59 +1.2 129,041 + LRK53_RS18705 0.63 -0.0 129,041 + LRK53_RS18705 0.63 -1.5 129,169 - LRK53_RS18705 0.77 -2.6 129,172 + LRK53_RS18705 0.77 -1.8 129,172 + LRK53_RS18705 0.77 -1.2 129,172 + LRK53_RS18705 0.77 -0.5 129,172 + LRK53_RS18705 0.77 +0.4 129,173 - LRK53_RS18705 0.77 -0.7
Or see this region's nucleotide sequence