Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17855 and LRK53_RS17860 are separated by 183 nucleotides LRK53_RS17860 and LRK53_RS17865 are separated by 13 nucleotides
LRK53_RS17855: LRK53_RS17855 - tyrosine--tRNA ligase, at 3,922,642 to 3,923,853
_RS17855
LRK53_RS17860: LRK53_RS17860 - peptidoglycan DD-metalloendopeptidase family protein, at 3,924,037 to 3,925,482
_RS17860
LRK53_RS17865: LRK53_RS17865 - anhydro-N-acetylmuramic acid kinase, at 3,925,496 to 3,926,626
_RS17865
Position (kb)
3924
3925
3926 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3924.019 kb on + strand at 3924.030 kb on + strand at 3924.119 kb on - strand at 3924.220 kb on - strand, within LRK53_RS17860 at 3924.673 kb on + strand, within LRK53_RS17860 at 3924.740 kb on - strand, within LRK53_RS17860 at 3924.793 kb on + strand, within LRK53_RS17860 at 3924.794 kb on - strand, within LRK53_RS17860 at 3924.806 kb on - strand, within LRK53_RS17860 at 3924.919 kb on + strand, within LRK53_RS17860 at 3925.054 kb on + strand, within LRK53_RS17860 at 3925.054 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.108 kb on + strand, within LRK53_RS17860 at 3925.109 kb on - strand, within LRK53_RS17860 at 3925.109 kb on - strand, within LRK53_RS17860 at 3925.109 kb on - strand, within LRK53_RS17860 at 3925.291 kb on + strand, within LRK53_RS17860 at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.517 kb on + strand at 3925.518 kb on - strand at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.198 kb on + strand, within LRK53_RS17865 at 3926.199 kb on - strand, within LRK53_RS17865 at 3926.199 kb on - strand, within LRK53_RS17865 at 3926.199 kb on - strand, within LRK53_RS17865 at 3926.237 kb on + strand, within LRK53_RS17865 at 3926.237 kb on + strand, within LRK53_RS17865 at 3926.238 kb on - strand, within LRK53_RS17865 at 3926.397 kb on + strand, within LRK53_RS17865
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 3,924,019 + +0.0 3,924,030 + -2.1 3,924,119 - +0.0 3,924,220 - LRK53_RS17860 0.13 -0.3 3,924,673 + LRK53_RS17860 0.44 -0.5 3,924,740 - LRK53_RS17860 0.49 +1.0 3,924,793 + LRK53_RS17860 0.52 -1.3 3,924,794 - LRK53_RS17860 0.52 -0.5 3,924,806 - LRK53_RS17860 0.53 -1.8 3,924,919 + LRK53_RS17860 0.61 +0.0 3,925,054 + LRK53_RS17860 0.70 +0.0 3,925,054 + LRK53_RS17860 0.70 -1.0 3,925,108 + LRK53_RS17860 0.74 +0.0 3,925,108 + LRK53_RS17860 0.74 +0.0 3,925,108 + LRK53_RS17860 0.74 -0.5 3,925,109 - LRK53_RS17860 0.74 +0.0 3,925,109 - LRK53_RS17860 0.74 +0.5 3,925,109 - LRK53_RS17860 0.74 +1.0 3,925,291 + LRK53_RS17860 0.87 +1.0 3,925,517 + +1.6 3,925,517 + +0.0 3,925,517 + -2.1 3,925,517 + +1.0 3,925,517 + +0.5 3,925,518 - +0.0 3,926,198 + LRK53_RS17865 0.62 +1.0 3,926,198 + LRK53_RS17865 0.62 -0.5 3,926,198 + LRK53_RS17865 0.62 -1.8 3,926,199 - LRK53_RS17865 0.62 +0.0 3,926,199 - LRK53_RS17865 0.62 -0.5 3,926,199 - LRK53_RS17865 0.62 -1.0 3,926,237 + LRK53_RS17865 0.66 +0.0 3,926,237 + LRK53_RS17865 0.66 +1.0 3,926,238 - LRK53_RS17865 0.66 +2.0 3,926,397 + LRK53_RS17865 0.80 +1.0
Or see this region's nucleotide sequence