Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14445 and LRK53_RS14450 are separated by 149 nucleotides LRK53_RS14450 and LRK53_RS14455 are separated by 43 nucleotides
LRK53_RS14445: LRK53_RS14445 - TIGR00730 family Rossman fold protein, at 3,165,808 to 3,166,662
_RS14445
LRK53_RS14450: LRK53_RS14450 - cytochrome c, at 3,166,812 to 3,167,285
_RS14450
LRK53_RS14455: LRK53_RS14455 - ATP-binding protein, at 3,167,329 to 3,168,708
_RS14455
Position (kb)
3166
3167
3168 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3166.135 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.138 kb on + strand, within LRK53_RS14445 at 3166.293 kb on + strand, within LRK53_RS14445 at 3166.293 kb on + strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.294 kb on - strand, within LRK53_RS14445 at 3166.360 kb on + strand, within LRK53_RS14445 at 3166.360 kb on + strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3167.121 kb on + strand, within LRK53_RS14450 at 3167.121 kb on + strand, within LRK53_RS14450 at 3167.121 kb on + strand, within LRK53_RS14450
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 3,166,135 + LRK53_RS14445 0.38 -1.0 3,166,138 + LRK53_RS14445 0.39 +1.0 3,166,138 + LRK53_RS14445 0.39 -0.0 3,166,138 + LRK53_RS14445 0.39 -0.8 3,166,138 + LRK53_RS14445 0.39 +1.0 3,166,138 + LRK53_RS14445 0.39 +0.3 3,166,138 + LRK53_RS14445 0.39 -1.0 3,166,293 + LRK53_RS14445 0.57 +1.6 3,166,293 + LRK53_RS14445 0.57 +0.5 3,166,294 - LRK53_RS14445 0.57 -0.1 3,166,294 - LRK53_RS14445 0.57 +0.7 3,166,294 - LRK53_RS14445 0.57 +1.0 3,166,294 - LRK53_RS14445 0.57 +2.0 3,166,294 - LRK53_RS14445 0.57 +0.6 3,166,294 - LRK53_RS14445 0.57 -0.6 3,166,360 + LRK53_RS14445 0.65 -1.0 3,166,360 + LRK53_RS14445 0.65 -1.0 3,166,361 - LRK53_RS14445 0.65 -1.9 3,166,361 - LRK53_RS14445 0.65 +1.4 3,166,361 - LRK53_RS14445 0.65 +0.7 3,166,454 + LRK53_RS14445 0.76 +1.4 3,166,454 + LRK53_RS14445 0.76 +1.0 3,166,454 + LRK53_RS14445 0.76 -1.6 3,166,454 + LRK53_RS14445 0.76 +1.0 3,166,454 + LRK53_RS14445 0.76 -1.0 3,166,454 + LRK53_RS14445 0.76 -0.6 3,166,454 + LRK53_RS14445 0.76 +0.2 3,166,455 - LRK53_RS14445 0.76 +1.0 3,166,455 - LRK53_RS14445 0.76 -0.0 3,166,455 - LRK53_RS14445 0.76 -0.6 3,166,455 - LRK53_RS14445 0.76 +0.4 3,166,455 - LRK53_RS14445 0.76 +1.0 3,167,121 + LRK53_RS14450 0.65 -1.6 3,167,121 + LRK53_RS14450 0.65 -0.0 3,167,121 + LRK53_RS14450 0.65 +0.4
Or see this region's nucleotide sequence