Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10950 and LRK53_RS10955 are separated by 34 nucleotides LRK53_RS10955 and LRK53_RS10960 are separated by 7 nucleotides
LRK53_RS10950: LRK53_RS10950 - DEAD/DEAH box helicase, at 2,445,891 to 2,446,979
_RS10950
LRK53_RS10955: LRK53_RS10955 - phosphopyruvate hydratase, at 2,447,014 to 2,448,294
_RS10955
LRK53_RS10960: LRK53_RS10960 - DNA mismatch repair protein MutS, at 2,448,302 to 2,449,843
_RS10960
Position (kb)
2447
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2446.098 kb on + strand, within LRK53_RS10950 at 2446.099 kb on - strand, within LRK53_RS10950 at 2446.099 kb on - strand, within LRK53_RS10950 at 2446.299 kb on + strand, within LRK53_RS10950 at 2446.397 kb on - strand, within LRK53_RS10950 at 2446.731 kb on + strand, within LRK53_RS10950 at 2446.816 kb on - strand, within LRK53_RS10950 at 2446.816 kb on - strand, within LRK53_RS10950 at 2447.010 kb on - strand at 2447.010 kb on - strand at 2447.188 kb on + strand, within LRK53_RS10955 at 2447.216 kb on + strand, within LRK53_RS10955 at 2447.217 kb on - strand, within LRK53_RS10955 at 2447.366 kb on - strand, within LRK53_RS10955 at 2447.404 kb on + strand, within LRK53_RS10955 at 2447.445 kb on - strand, within LRK53_RS10955 at 2447.506 kb on + strand, within LRK53_RS10955 at 2447.506 kb on + strand, within LRK53_RS10955 at 2447.506 kb on + strand, within LRK53_RS10955 at 2447.506 kb on + strand, within LRK53_RS10955 at 2447.507 kb on - strand, within LRK53_RS10955 at 2447.507 kb on - strand, within LRK53_RS10955 at 2447.852 kb on - strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.100 kb on + strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.101 kb on - strand, within LRK53_RS10955 at 2448.207 kb on + strand at 2448.207 kb on + strand at 2448.207 kb on + strand at 2448.311 kb on - strand at 2448.513 kb on + strand, within LRK53_RS10960 at 2448.514 kb on - strand, within LRK53_RS10960 at 2449.047 kb on + strand, within LRK53_RS10960 at 2449.047 kb on + strand, within LRK53_RS10960 at 2449.090 kb on + strand, within LRK53_RS10960 at 2449.200 kb on + strand, within LRK53_RS10960 at 2449.239 kb on + strand, within LRK53_RS10960 at 2449.239 kb on + strand, within LRK53_RS10960 at 2449.240 kb on - strand, within LRK53_RS10960 at 2449.240 kb on - strand, within LRK53_RS10960 at 2449.251 kb on + strand, within LRK53_RS10960 at 2449.251 kb on + strand, within LRK53_RS10960 at 2449.251 kb on + strand, within LRK53_RS10960 at 2449.251 kb on + strand, within LRK53_RS10960 at 2449.252 kb on - strand, within LRK53_RS10960 at 2449.252 kb on - strand, within LRK53_RS10960 at 2449.272 kb on + strand, within LRK53_RS10960 at 2449.272 kb on + strand, within LRK53_RS10960 at 2449.272 kb on + strand, within LRK53_RS10960 at 2449.273 kb on - strand, within LRK53_RS10960 at 2449.273 kb on - strand, within LRK53_RS10960 at 2449.273 kb on - strand, within LRK53_RS10960 at 2449.273 kb on - strand, within LRK53_RS10960 at 2449.273 kb on - strand, within LRK53_RS10960
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 2,446,098 + LRK53_RS10950 0.19 +0.3 2,446,099 - LRK53_RS10950 0.19 -0.3 2,446,099 - LRK53_RS10950 0.19 -1.0 2,446,299 + LRK53_RS10950 0.37 -0.6 2,446,397 - LRK53_RS10950 0.46 +0.2 2,446,731 + LRK53_RS10950 0.77 -0.0 2,446,816 - LRK53_RS10950 0.85 +1.0 2,446,816 - LRK53_RS10950 0.85 -1.1 2,447,010 - -0.2 2,447,010 - -0.6 2,447,188 + LRK53_RS10955 0.14 -0.6 2,447,216 + LRK53_RS10955 0.16 -1.6 2,447,217 - LRK53_RS10955 0.16 +1.0 2,447,366 - LRK53_RS10955 0.27 -0.4 2,447,404 + LRK53_RS10955 0.30 -1.0 2,447,445 - LRK53_RS10955 0.34 -0.3 2,447,506 + LRK53_RS10955 0.38 -0.0 2,447,506 + LRK53_RS10955 0.38 -0.6 2,447,506 + LRK53_RS10955 0.38 -1.4 2,447,506 + LRK53_RS10955 0.38 -1.2 2,447,507 - LRK53_RS10955 0.38 -0.4 2,447,507 - LRK53_RS10955 0.38 +0.2 2,447,852 - LRK53_RS10955 0.65 -1.6 2,448,100 + LRK53_RS10955 0.85 -2.0 2,448,100 + LRK53_RS10955 0.85 -0.9 2,448,100 + LRK53_RS10955 0.85 -2.4 2,448,100 + LRK53_RS10955 0.85 -0.6 2,448,100 + LRK53_RS10955 0.85 -2.2 2,448,100 + LRK53_RS10955 0.85 -1.0 2,448,100 + LRK53_RS10955 0.85 +1.4 2,448,100 + LRK53_RS10955 0.85 -1.6 2,448,100 + LRK53_RS10955 0.85 -1.0 2,448,100 + LRK53_RS10955 0.85 -1.6 2,448,101 - LRK53_RS10955 0.85 -0.6 2,448,101 - LRK53_RS10955 0.85 +1.0 2,448,101 - LRK53_RS10955 0.85 +0.4 2,448,101 - LRK53_RS10955 0.85 -2.4 2,448,101 - LRK53_RS10955 0.85 -0.4 2,448,101 - LRK53_RS10955 0.85 -0.6 2,448,101 - LRK53_RS10955 0.85 +2.5 2,448,207 + -1.8 2,448,207 + +1.0 2,448,207 + -0.6 2,448,311 - -1.4 2,448,513 + LRK53_RS10960 0.14 +1.0 2,448,514 - LRK53_RS10960 0.14 -0.5 2,449,047 + LRK53_RS10960 0.48 -1.8 2,449,047 + LRK53_RS10960 0.48 -0.6 2,449,090 + LRK53_RS10960 0.51 -0.9 2,449,200 + LRK53_RS10960 0.58 +0.5 2,449,239 + LRK53_RS10960 0.61 +1.0 2,449,239 + LRK53_RS10960 0.61 -1.0 2,449,240 - LRK53_RS10960 0.61 +1.6 2,449,240 - LRK53_RS10960 0.61 -0.0 2,449,251 + LRK53_RS10960 0.62 -0.0 2,449,251 + LRK53_RS10960 0.62 +1.0 2,449,251 + LRK53_RS10960 0.62 +0.1 2,449,251 + LRK53_RS10960 0.62 -0.0 2,449,252 - LRK53_RS10960 0.62 -0.8 2,449,252 - LRK53_RS10960 0.62 -1.0 2,449,272 + LRK53_RS10960 0.63 -0.8 2,449,272 + LRK53_RS10960 0.63 -0.5 2,449,272 + LRK53_RS10960 0.63 -0.0 2,449,273 - LRK53_RS10960 0.63 -1.8 2,449,273 - LRK53_RS10960 0.63 -0.5 2,449,273 - LRK53_RS10960 0.63 -1.8 2,449,273 - LRK53_RS10960 0.63 -0.0 2,449,273 - LRK53_RS10960 0.63 -1.0
Or see this region's nucleotide sequence