Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09720 and LRK53_RS09725 are separated by 117 nucleotides LRK53_RS09725 and LRK53_RS09730 are separated by 66 nucleotides LRK53_RS09730 and LRK53_RS09735 are separated by 100 nucleotides LRK53_RS09735 and LRK53_RS09740 are separated by 107 nucleotides LRK53_RS09740 and LRK53_RS09745 are separated by 79 nucleotides
LRK53_RS09720: LRK53_RS09720 - NUDIX hydrolase, at 2,187,428 to 2,187,913
_RS09720
LRK53_RS09725: LRK53_RS09725 - ATP-dependent Clp protease adapter ClpS, at 2,188,031 to 2,188,357
_RS09725
LRK53_RS09730: LRK53_RS09730 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,188,424 to 2,190,694
_RS09730
LRK53_RS09735: LRK53_RS09735 - translation initiation factor IF-1, at 2,190,795 to 2,191,013
_RS09735
LRK53_RS09740: LRK53_RS09740 - polyhydroxyalkanoic acid system family protein, at 2,191,121 to 2,191,396
_RS09740
LRK53_RS09745: LRK53_RS09745 - FHA domain-containing protein, at 2,191,476 to 2,192,243
_RS09745
Position (kb)
2188
2189
2190
2191 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.997 kb on + strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.998 kb on - strand at 2187.999 kb on + strand at 2187.999 kb on + strand at 2187.999 kb on + strand at 2187.999 kb on + strand at 2188.000 kb on - strand at 2188.000 kb on - strand at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.125 kb on + strand, within LRK53_RS09725 at 2188.126 kb on - strand, within LRK53_RS09725 at 2188.126 kb on - strand, within LRK53_RS09725 at 2188.126 kb on - strand, within LRK53_RS09725 at 2188.126 kb on - strand, within LRK53_RS09725 at 2188.180 kb on + strand, within LRK53_RS09725 at 2188.180 kb on + strand, within LRK53_RS09725 at 2188.180 kb on + strand, within LRK53_RS09725 at 2188.180 kb on + strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.181 kb on - strand, within LRK53_RS09725 at 2188.234 kb on + strand, within LRK53_RS09725 at 2188.234 kb on + strand, within LRK53_RS09725 at 2188.251 kb on + strand, within LRK53_RS09725 at 2188.251 kb on + strand, within LRK53_RS09725 at 2188.252 kb on - strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.260 kb on + strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.261 kb on - strand, within LRK53_RS09725 at 2188.290 kb on + strand, within LRK53_RS09725 at 2188.291 kb on - strand, within LRK53_RS09725 at 2188.291 kb on - strand, within LRK53_RS09725 at 2188.291 kb on - strand, within LRK53_RS09725 at 2188.291 kb on - strand, within LRK53_RS09725 at 2188.342 kb on + strand at 2188.342 kb on + strand at 2188.342 kb on + strand at 2188.463 kb on + strand at 2188.463 kb on + strand at 2188.463 kb on + strand at 2188.463 kb on + strand at 2188.464 kb on - strand at 2188.665 kb on + strand, within LRK53_RS09730 at 2188.784 kb on + strand, within LRK53_RS09730 at 2188.784 kb on + strand, within LRK53_RS09730 at 2188.785 kb on - strand, within LRK53_RS09730 at 2188.785 kb on - strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.829 kb on + strand, within LRK53_RS09730 at 2188.830 kb on - strand, within LRK53_RS09730 at 2188.830 kb on - strand, within LRK53_RS09730 at 2188.830 kb on - strand, within LRK53_RS09730 at 2188.830 kb on - strand, within LRK53_RS09730 at 2188.830 kb on - strand, within LRK53_RS09730 at 2189.060 kb on + strand, within LRK53_RS09730 at 2189.543 kb on + strand, within LRK53_RS09730 at 2189.543 kb on + strand, within LRK53_RS09730 at 2189.543 kb on + strand, within LRK53_RS09730 at 2189.543 kb on + strand, within LRK53_RS09730 at 2189.544 kb on - strand, within LRK53_RS09730 at 2189.708 kb on + strand, within LRK53_RS09730 at 2189.708 kb on + strand, within LRK53_RS09730 at 2189.708 kb on + strand, within LRK53_RS09730 at 2189.708 kb on + strand, within LRK53_RS09730 at 2189.709 kb on - strand, within LRK53_RS09730 at 2189.709 kb on - strand, within LRK53_RS09730 at 2189.709 kb on - strand, within LRK53_RS09730 at 2189.996 kb on + strand, within LRK53_RS09730 at 2189.996 kb on + strand, within LRK53_RS09730 at 2189.997 kb on - strand, within LRK53_RS09730 at 2189.997 kb on - strand, within LRK53_RS09730 at 2190.044 kb on + strand, within LRK53_RS09730 at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.796 kb on + strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2190.797 kb on - strand at 2191.423 kb on + strand at 2191.423 kb on + strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.424 kb on - strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.444 kb on + strand at 2191.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 2,187,997 + -0.9 2,187,997 + -0.8 2,187,997 + +0.4 2,187,997 + +1.4 2,187,997 + +0.2 2,187,997 + -0.5 2,187,997 + -0.8 2,187,997 + -1.0 2,187,997 + -0.7 2,187,997 + -0.0 2,187,997 + -1.2 2,187,997 + -0.8 2,187,997 + -0.0 2,187,997 + -0.7 2,187,998 - +1.0 2,187,998 - +1.4 2,187,998 - -1.3 2,187,998 - -1.6 2,187,998 - +0.4 2,187,998 - -1.6 2,187,998 - -0.8 2,187,998 - -0.0 2,187,998 - -0.0 2,187,998 - -1.2 2,187,998 - +0.4 2,187,998 - -0.0 2,187,998 - -0.7 2,187,998 - +0.4 2,187,998 - -1.3 2,187,998 - -0.7 2,187,998 - -0.0 2,187,999 + +1.0 2,187,999 + -0.2 2,187,999 + +0.1 2,187,999 + -0.8 2,188,000 - +1.0 2,188,000 - +1.0 2,188,125 + LRK53_RS09725 0.29 -0.8 2,188,125 + LRK53_RS09725 0.29 -2.0 2,188,125 + LRK53_RS09725 0.29 -0.9 2,188,125 + LRK53_RS09725 0.29 +1.0 2,188,125 + LRK53_RS09725 0.29 -1.0 2,188,125 + LRK53_RS09725 0.29 -1.3 2,188,125 + LRK53_RS09725 0.29 +1.0 2,188,125 + LRK53_RS09725 0.29 -0.0 2,188,126 - LRK53_RS09725 0.29 -1.2 2,188,126 - LRK53_RS09725 0.29 -0.0 2,188,126 - LRK53_RS09725 0.29 -0.6 2,188,126 - LRK53_RS09725 0.29 +1.0 2,188,180 + LRK53_RS09725 0.46 +0.2 2,188,180 + LRK53_RS09725 0.46 -0.6 2,188,180 + LRK53_RS09725 0.46 +1.0 2,188,180 + LRK53_RS09725 0.46 -0.8 2,188,181 - LRK53_RS09725 0.46 +1.6 2,188,181 - LRK53_RS09725 0.46 -0.4 2,188,181 - LRK53_RS09725 0.46 -1.0 2,188,181 - LRK53_RS09725 0.46 -0.6 2,188,181 - LRK53_RS09725 0.46 +1.0 2,188,181 - LRK53_RS09725 0.46 -1.6 2,188,181 - LRK53_RS09725 0.46 +0.7 2,188,181 - LRK53_RS09725 0.46 -0.6 2,188,181 - LRK53_RS09725 0.46 -1.3 2,188,181 - LRK53_RS09725 0.46 -0.0 2,188,181 - LRK53_RS09725 0.46 +1.2 2,188,181 - LRK53_RS09725 0.46 +0.2 2,188,234 + LRK53_RS09725 0.62 -1.2 2,188,234 + LRK53_RS09725 0.62 -0.6 2,188,251 + LRK53_RS09725 0.67 +0.2 2,188,251 + LRK53_RS09725 0.67 -1.6 2,188,252 - LRK53_RS09725 0.68 -1.3 2,188,260 + LRK53_RS09725 0.70 -0.6 2,188,260 + LRK53_RS09725 0.70 -0.0 2,188,260 + LRK53_RS09725 0.70 -0.4 2,188,260 + LRK53_RS09725 0.70 -0.0 2,188,260 + LRK53_RS09725 0.70 -0.6 2,188,260 + LRK53_RS09725 0.70 -1.6 2,188,260 + LRK53_RS09725 0.70 -0.0 2,188,260 + LRK53_RS09725 0.70 +0.3 2,188,261 - LRK53_RS09725 0.70 -0.6 2,188,261 - LRK53_RS09725 0.70 +0.7 2,188,261 - LRK53_RS09725 0.70 -1.8 2,188,261 - LRK53_RS09725 0.70 +0.4 2,188,261 - LRK53_RS09725 0.70 -0.8 2,188,261 - LRK53_RS09725 0.70 +1.0 2,188,261 - LRK53_RS09725 0.70 +1.0 2,188,290 + LRK53_RS09725 0.79 +1.0 2,188,291 - LRK53_RS09725 0.80 -0.0 2,188,291 - LRK53_RS09725 0.80 -0.3 2,188,291 - LRK53_RS09725 0.80 -0.0 2,188,291 - LRK53_RS09725 0.80 +2.6 2,188,342 + +1.0 2,188,342 + -0.0 2,188,342 + -1.8 2,188,463 + -0.0 2,188,463 + -0.0 2,188,463 + -1.3 2,188,463 + -0.9 2,188,464 - +2.0 2,188,665 + LRK53_RS09730 0.11 -1.0 2,188,784 + LRK53_RS09730 0.16 +1.0 2,188,784 + LRK53_RS09730 0.16 -1.2 2,188,785 - LRK53_RS09730 0.16 +1.0 2,188,785 - LRK53_RS09730 0.16 +1.0 2,188,829 + LRK53_RS09730 0.18 -0.0 2,188,829 + LRK53_RS09730 0.18 -0.0 2,188,829 + LRK53_RS09730 0.18 -0.0 2,188,829 + LRK53_RS09730 0.18 -1.0 2,188,829 + LRK53_RS09730 0.18 +1.0 2,188,829 + LRK53_RS09730 0.18 -0.0 2,188,829 + LRK53_RS09730 0.18 -0.6 2,188,830 - LRK53_RS09730 0.18 +2.0 2,188,830 - LRK53_RS09730 0.18 -1.6 2,188,830 - LRK53_RS09730 0.18 +1.0 2,188,830 - LRK53_RS09730 0.18 +1.0 2,188,830 - LRK53_RS09730 0.18 -3.3 2,189,060 + LRK53_RS09730 0.28 -1.0 2,189,543 + LRK53_RS09730 0.49 -2.0 2,189,543 + LRK53_RS09730 0.49 -0.6 2,189,543 + LRK53_RS09730 0.49 -0.6 2,189,543 + LRK53_RS09730 0.49 +0.2 2,189,544 - LRK53_RS09730 0.49 -0.0 2,189,708 + LRK53_RS09730 0.57 +1.0 2,189,708 + LRK53_RS09730 0.57 +2.0 2,189,708 + LRK53_RS09730 0.57 -1.8 2,189,708 + LRK53_RS09730 0.57 -0.6 2,189,709 - LRK53_RS09730 0.57 -0.2 2,189,709 - LRK53_RS09730 0.57 -1.2 2,189,709 - LRK53_RS09730 0.57 +1.0 2,189,996 + LRK53_RS09730 0.69 -1.6 2,189,996 + LRK53_RS09730 0.69 -0.0 2,189,997 - LRK53_RS09730 0.69 -1.6 2,189,997 - LRK53_RS09730 0.69 -0.0 2,190,044 + LRK53_RS09730 0.71 +0.4 2,190,796 + -0.1 2,190,796 + -1.0 2,190,796 + +0.4 2,190,796 + -1.3 2,190,796 + -0.6 2,190,797 - -0.6 2,190,797 - +0.2 2,190,797 - -0.0 2,190,797 - -1.0 2,190,797 - +1.8 2,190,797 - -0.6 2,190,797 - +1.0 2,190,797 - +1.0 2,190,797 - -0.8 2,190,797 - +1.6 2,190,797 - -0.0 2,191,423 + -0.9 2,191,423 + -1.0 2,191,424 - -0.2 2,191,424 - -0.1 2,191,424 - +1.0 2,191,424 - +1.0 2,191,444 + -0.8 2,191,444 + -0.0 2,191,444 + -1.7 2,191,444 + -0.0 2,191,444 + -0.6 2,191,444 + -0.0 2,191,444 + -1.3 2,191,444 + -1.1 2,191,444 + -1.3 2,191,444 + -0.8 2,191,445 - -0.0
Or see this region's nucleotide sequence