Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09655 and LRK53_RS09660 overlap by 4 nucleotides LRK53_RS09660 and LRK53_RS09665 overlap by 4 nucleotides LRK53_RS09665 and LRK53_RS09670 are separated by 76 nucleotides LRK53_RS09670 and LRK53_RS09675 are separated by 105 nucleotides
LRK53_RS09655: LRK53_RS09655 - ribonuclease R, at 2,174,454 to 2,177,024
_RS09655
LRK53_RS09660: LRK53_RS09660 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,177,021 to 2,177,767
_RS09660
LRK53_RS09665: LRK53_RS09665 - hypothetical protein, at 2,177,764 to 2,178,033
_RS09665
LRK53_RS09670: LRK53_RS09670 - quaternary ammonium compound efflux SMR transporter SugE, at 2,178,110 to 2,178,427
_RS09670
LRK53_RS09675: LRK53_RS09675 - phosphate signaling complex protein PhoU, at 2,178,533 to 2,179,255
_RS09675
Position (kb)
2177
2178 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2176.095 kb on + strand, within LRK53_RS09655 at 2176.096 kb on - strand, within LRK53_RS09655 at 2176.096 kb on - strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.140 kb on + strand, within LRK53_RS09655 at 2176.141 kb on - strand, within LRK53_RS09655 at 2176.233 kb on + strand, within LRK53_RS09655 at 2176.233 kb on + strand, within LRK53_RS09655 at 2176.234 kb on - strand, within LRK53_RS09655 at 2176.234 kb on - strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.239 kb on + strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.240 kb on - strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.241 kb on + strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.242 kb on - strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.470 kb on + strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.471 kb on - strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.473 kb on + strand, within LRK53_RS09655 at 2176.474 kb on - strand, within LRK53_RS09655 at 2176.474 kb on - strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.650 kb on + strand, within LRK53_RS09655 at 2176.651 kb on - strand, within LRK53_RS09655 at 2176.651 kb on - strand, within LRK53_RS09655 at 2176.656 kb on + strand, within LRK53_RS09655 at 2176.656 kb on + strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2176.657 kb on - strand, within LRK53_RS09655 at 2177.243 kb on + strand, within LRK53_RS09660 at 2177.243 kb on + strand, within LRK53_RS09660 at 2177.573 kb on + strand, within LRK53_RS09660 at 2177.779 kb on + strand at 2177.779 kb on + strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.780 kb on - strand at 2177.794 kb on + strand, within LRK53_RS09665 at 2177.795 kb on - strand, within LRK53_RS09665 at 2177.795 kb on - strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.869 kb on + strand, within LRK53_RS09665 at 2177.870 kb on - strand, within LRK53_RS09665 at 2177.870 kb on - strand, within LRK53_RS09665 at 2177.980 kb on + strand, within LRK53_RS09665 at 2177.980 kb on + strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2177.981 kb on - strand, within LRK53_RS09665 at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.122 kb on + strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.123 kb on - strand at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.173 kb on + strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.174 kb on - strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.284 kb on + strand, within LRK53_RS09670 at 2178.285 kb on - strand, within LRK53_RS09670 at 2178.285 kb on - strand, within LRK53_RS09670 at 2178.415 kb on + strand at 2178.415 kb on + strand at 2178.416 kb on - strand at 2178.439 kb on + strand at 2178.440 kb on - strand at 2178.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 2,176,095 + LRK53_RS09655 0.64 -0.0 2,176,096 - LRK53_RS09655 0.64 +0.4 2,176,096 - LRK53_RS09655 0.64 -1.0 2,176,140 + LRK53_RS09655 0.66 -0.0 2,176,140 + LRK53_RS09655 0.66 +1.0 2,176,140 + LRK53_RS09655 0.66 -0.0 2,176,141 - LRK53_RS09655 0.66 -0.3 2,176,233 + LRK53_RS09655 0.69 -0.6 2,176,233 + LRK53_RS09655 0.69 +1.0 2,176,234 - LRK53_RS09655 0.69 -0.6 2,176,234 - LRK53_RS09655 0.69 -2.2 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 +3.0 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 -2.0 2,176,239 + LRK53_RS09655 0.69 -0.3 2,176,239 + LRK53_RS09655 0.69 -1.2 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 -1.6 2,176,239 + LRK53_RS09655 0.69 -1.2 2,176,239 + LRK53_RS09655 0.69 -1.8 2,176,239 + LRK53_RS09655 0.69 -1.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 -0.0 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 +1.0 2,176,239 + LRK53_RS09655 0.69 +0.2 2,176,240 - LRK53_RS09655 0.69 -1.8 2,176,240 - LRK53_RS09655 0.69 -0.6 2,176,240 - LRK53_RS09655 0.69 -1.8 2,176,240 - LRK53_RS09655 0.69 +1.0 2,176,240 - LRK53_RS09655 0.69 -0.3 2,176,240 - LRK53_RS09655 0.69 -1.3 2,176,240 - LRK53_RS09655 0.69 -1.3 2,176,240 - LRK53_RS09655 0.69 -0.6 2,176,240 - LRK53_RS09655 0.69 -0.0 2,176,240 - LRK53_RS09655 0.69 -0.6 2,176,240 - LRK53_RS09655 0.69 -1.3 2,176,240 - LRK53_RS09655 0.69 -0.6 2,176,240 - LRK53_RS09655 0.69 +1.0 2,176,240 - LRK53_RS09655 0.69 -1.3 2,176,240 - LRK53_RS09655 0.69 +1.0 2,176,240 - LRK53_RS09655 0.69 -0.0 2,176,241 + LRK53_RS09655 0.70 +2.0 2,176,241 + LRK53_RS09655 0.70 -2.0 2,176,241 + LRK53_RS09655 0.70 -1.2 2,176,241 + LRK53_RS09655 0.70 +1.0 2,176,241 + LRK53_RS09655 0.70 -1.6 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 +1.6 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 -1.3 2,176,241 + LRK53_RS09655 0.70 -1.2 2,176,241 + LRK53_RS09655 0.70 +2.6 2,176,241 + LRK53_RS09655 0.70 -0.0 2,176,241 + LRK53_RS09655 0.70 -1.0 2,176,241 + LRK53_RS09655 0.70 +1.0 2,176,241 + LRK53_RS09655 0.70 +1.0 2,176,241 + LRK53_RS09655 0.70 -2.5 2,176,241 + LRK53_RS09655 0.70 -0.3 2,176,241 + LRK53_RS09655 0.70 -0.6 2,176,241 + LRK53_RS09655 0.70 -0.0 2,176,241 + LRK53_RS09655 0.70 -1.6 2,176,241 + LRK53_RS09655 0.70 +1.0 2,176,241 + LRK53_RS09655 0.70 +1.0 2,176,241 + LRK53_RS09655 0.70 -0.0 2,176,241 + LRK53_RS09655 0.70 +0.4 2,176,241 + LRK53_RS09655 0.70 -1.3 2,176,242 - LRK53_RS09655 0.70 -0.6 2,176,242 - LRK53_RS09655 0.70 -2.2 2,176,242 - LRK53_RS09655 0.70 -0.6 2,176,242 - LRK53_RS09655 0.70 -1.3 2,176,242 - LRK53_RS09655 0.70 -0.6 2,176,242 - LRK53_RS09655 0.70 +1.0 2,176,242 - LRK53_RS09655 0.70 -0.6 2,176,242 - LRK53_RS09655 0.70 -0.6 2,176,242 - LRK53_RS09655 0.70 -1.8 2,176,242 - LRK53_RS09655 0.70 -1.3 2,176,242 - LRK53_RS09655 0.70 -1.6 2,176,242 - LRK53_RS09655 0.70 -0.0 2,176,242 - LRK53_RS09655 0.70 +0.2 2,176,242 - LRK53_RS09655 0.70 +0.4 2,176,470 + LRK53_RS09655 0.78 -1.3 2,176,470 + LRK53_RS09655 0.78 -1.6 2,176,470 + LRK53_RS09655 0.78 -2.2 2,176,471 - LRK53_RS09655 0.78 +1.0 2,176,471 - LRK53_RS09655 0.78 -0.0 2,176,471 - LRK53_RS09655 0.78 -1.8 2,176,471 - LRK53_RS09655 0.78 +1.0 2,176,471 - LRK53_RS09655 0.78 +0.4 2,176,471 - LRK53_RS09655 0.78 -0.8 2,176,471 - LRK53_RS09655 0.78 -1.5 2,176,473 + LRK53_RS09655 0.79 -0.3 2,176,473 + LRK53_RS09655 0.79 -1.2 2,176,473 + LRK53_RS09655 0.79 -0.8 2,176,473 + LRK53_RS09655 0.79 -1.2 2,176,473 + LRK53_RS09655 0.79 -1.3 2,176,473 + LRK53_RS09655 0.79 -1.3 2,176,473 + LRK53_RS09655 0.79 -0.6 2,176,474 - LRK53_RS09655 0.79 +0.4 2,176,474 - LRK53_RS09655 0.79 +1.0 2,176,650 + LRK53_RS09655 0.85 -0.6 2,176,650 + LRK53_RS09655 0.85 -0.0 2,176,650 + LRK53_RS09655 0.85 -0.8 2,176,651 - LRK53_RS09655 0.85 -0.6 2,176,651 - LRK53_RS09655 0.85 -1.8 2,176,656 + LRK53_RS09655 0.86 +0.2 2,176,656 + LRK53_RS09655 0.86 -0.6 2,176,657 - LRK53_RS09655 0.86 -1.3 2,176,657 - LRK53_RS09655 0.86 -1.3 2,176,657 - LRK53_RS09655 0.86 +1.0 2,176,657 - LRK53_RS09655 0.86 +0.2 2,177,243 + LRK53_RS09660 0.30 -0.6 2,177,243 + LRK53_RS09660 0.30 -0.0 2,177,573 + LRK53_RS09660 0.74 -0.0 2,177,779 + -0.5 2,177,779 + -0.0 2,177,780 - -0.0 2,177,780 - +2.0 2,177,780 - -0.0 2,177,780 - +1.0 2,177,794 + LRK53_RS09665 0.11 -0.3 2,177,795 - LRK53_RS09665 0.11 -1.5 2,177,795 - LRK53_RS09665 0.11 -0.6 2,177,869 + LRK53_RS09665 0.39 +1.0 2,177,869 + LRK53_RS09665 0.39 -3.1 2,177,869 + LRK53_RS09665 0.39 -1.1 2,177,869 + LRK53_RS09665 0.39 -1.2 2,177,870 - LRK53_RS09665 0.39 -0.0 2,177,870 - LRK53_RS09665 0.39 -0.6 2,177,980 + LRK53_RS09665 0.80 -0.3 2,177,980 + LRK53_RS09665 0.80 -1.4 2,177,981 - LRK53_RS09665 0.80 +0.2 2,177,981 - LRK53_RS09665 0.80 -1.0 2,177,981 - LRK53_RS09665 0.80 -1.2 2,177,981 - LRK53_RS09665 0.80 +1.0 2,178,122 + -0.8 2,178,122 + -1.6 2,178,122 + -1.0 2,178,122 + -0.2 2,178,122 + -0.6 2,178,122 + -0.0 2,178,122 + +0.1 2,178,122 + -1.3 2,178,122 + -0.5 2,178,122 + +1.0 2,178,122 + -0.0 2,178,122 + -1.1 2,178,123 - +0.4 2,178,123 - -0.6 2,178,123 - -1.0 2,178,123 - -0.6 2,178,123 - -0.9 2,178,123 - +0.4 2,178,123 - +0.4 2,178,123 - -0.1 2,178,123 - -0.6 2,178,123 - -1.6 2,178,123 - -1.0 2,178,123 - -0.4 2,178,123 - -0.6 2,178,123 - -2.3 2,178,123 - -0.8 2,178,173 + LRK53_RS09670 0.20 +1.0 2,178,173 + LRK53_RS09670 0.20 -1.2 2,178,173 + LRK53_RS09670 0.20 -0.0 2,178,173 + LRK53_RS09670 0.20 -0.9 2,178,173 + LRK53_RS09670 0.20 -0.5 2,178,173 + LRK53_RS09670 0.20 -1.0 2,178,173 + LRK53_RS09670 0.20 +0.1 2,178,173 + LRK53_RS09670 0.20 +1.0 2,178,174 - LRK53_RS09670 0.20 -0.3 2,178,174 - LRK53_RS09670 0.20 -2.3 2,178,174 - LRK53_RS09670 0.20 -1.4 2,178,174 - LRK53_RS09670 0.20 +0.4 2,178,174 - LRK53_RS09670 0.20 -0.0 2,178,174 - LRK53_RS09670 0.20 -0.0 2,178,174 - LRK53_RS09670 0.20 -0.6 2,178,174 - LRK53_RS09670 0.20 -0.0 2,178,174 - LRK53_RS09670 0.20 -1.6 2,178,284 + LRK53_RS09670 0.55 +1.0 2,178,284 + LRK53_RS09670 0.55 +1.3 2,178,284 + LRK53_RS09670 0.55 -0.8 2,178,285 - LRK53_RS09670 0.55 -0.6 2,178,285 - LRK53_RS09670 0.55 +0.1 2,178,415 + +1.0 2,178,415 + -1.3 2,178,416 - -1.1 2,178,439 + -1.0 2,178,440 - -0.6 2,178,440 - -1.8
Or see this region's nucleotide sequence