Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08815 and LRK53_RS08820 overlap by 1 nucleotides LRK53_RS08820 and LRK53_RS08825 are separated by 108 nucleotides LRK53_RS08825 and LRK53_RS08830 are separated by 19 nucleotides
LRK53_RS08815: LRK53_RS08815 - DNA polymerase III subunit gamma/tau, at 1,979,698 to 1,981,377
_RS08815
LRK53_RS08820: LRK53_RS08820 - YbaB/EbfC family nucleoid-associated protein, at 1,981,377 to 1,981,700
_RS08820
LRK53_RS08825: LRK53_RS08825 - recombination mediator RecR, at 1,981,809 to 1,982,408
_RS08825
LRK53_RS08830: LRK53_RS08830 - histidine triad nucleotide-binding protein, at 1,982,428 to 1,982,772
_RS08830
Position (kb) 1981
1982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1981.351 kb on + strand at 1981.351 kb on + strand at 1981.351 kb on + strand at 1981.351 kb on + strand at 1981.351 kb on + strand at 1981.351 kb on + strand at 1981.352 kb on - strand at 1981.352 kb on - strand at 1981.352 kb on - strand at 1981.352 kb on - strand at 1981.352 kb on - strand at 1981.534 kb on + strand, within LRK53_RS08820 at 1981.535 kb on - strand, within LRK53_RS08820 at 1981.535 kb on - strand, within LRK53_RS08820 at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.734 kb on + strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1981.735 kb on - strand at 1982.118 kb on + strand, within LRK53_RS08825 at 1982.118 kb on + strand, within LRK53_RS08825 at 1982.119 kb on - strand, within LRK53_RS08825 at 1982.119 kb on - strand, within LRK53_RS08825 at 1982.271 kb on + strand, within LRK53_RS08825 at 1982.271 kb on + strand, within LRK53_RS08825 at 1982.271 kb on + strand, within LRK53_RS08825 at 1982.271 kb on + strand, within LRK53_RS08825 at 1982.272 kb on - strand, within LRK53_RS08825 at 1982.272 kb on - strand, within LRK53_RS08825 at 1982.272 kb on - strand, within LRK53_RS08825 at 1982.272 kb on - strand, within LRK53_RS08825 at 1982.352 kb on + strand at 1982.352 kb on + strand at 1982.352 kb on + strand at 1982.352 kb on + strand at 1982.352 kb on + strand at 1982.352 kb on + strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.353 kb on - strand at 1982.410 kb on + strand at 1982.411 kb on - strand at 1982.427 kb on + strand at 1982.427 kb on + strand at 1982.427 kb on + strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.428 kb on - strand at 1982.485 kb on + strand, within LRK53_RS08830 at 1982.485 kb on + strand, within LRK53_RS08830 at 1982.485 kb on + strand, within LRK53_RS08830 at 1982.485 kb on + strand, within LRK53_RS08830 at 1982.486 kb on - strand, within LRK53_RS08830 at 1982.486 kb on - strand, within LRK53_RS08830 at 1982.486 kb on - strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.543 kb on + strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.544 kb on - strand, within LRK53_RS08830 at 1982.639 kb on - strand, within LRK53_RS08830
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 1,981,351 + -0.0 1,981,351 + -0.4 1,981,351 + -1.8 1,981,351 + -0.0 1,981,351 + -0.0 1,981,351 + -0.0 1,981,352 - -0.4 1,981,352 - -1.0 1,981,352 - -1.2 1,981,352 - -0.2 1,981,352 - -1.6 1,981,534 + LRK53_RS08820 0.48 +0.6 1,981,535 - LRK53_RS08820 0.49 -2.1 1,981,535 - LRK53_RS08820 0.49 -0.6 1,981,734 + +1.2 1,981,734 + -0.8 1,981,734 + -1.2 1,981,734 + +0.4 1,981,734 + -2.3 1,981,734 + -1.3 1,981,734 + -0.6 1,981,735 - +0.3 1,981,735 - +0.4 1,981,735 - -1.1 1,981,735 - -0.5 1,981,735 - -0.6 1,981,735 - -0.9 1,981,735 - -0.3 1,982,118 + LRK53_RS08825 0.52 -1.7 1,982,118 + LRK53_RS08825 0.52 +1.0 1,982,119 - LRK53_RS08825 0.52 +1.0 1,982,119 - LRK53_RS08825 0.52 -0.3 1,982,271 + LRK53_RS08825 0.77 -2.0 1,982,271 + LRK53_RS08825 0.77 -1.5 1,982,271 + LRK53_RS08825 0.77 -0.0 1,982,271 + LRK53_RS08825 0.77 +0.3 1,982,272 - LRK53_RS08825 0.77 -0.6 1,982,272 - LRK53_RS08825 0.77 -1.0 1,982,272 - LRK53_RS08825 0.77 +0.3 1,982,272 - LRK53_RS08825 0.77 -0.8 1,982,352 + -0.4 1,982,352 + -0.7 1,982,352 + -0.6 1,982,352 + -1.0 1,982,352 + -0.3 1,982,352 + -1.7 1,982,353 - -0.6 1,982,353 - -0.0 1,982,353 - -0.0 1,982,353 - -0.3 1,982,353 - -0.4 1,982,353 - -0.6 1,982,353 - +1.0 1,982,353 - -1.2 1,982,353 - +1.0 1,982,410 + +1.0 1,982,411 - -0.3 1,982,427 + +1.0 1,982,427 + -0.9 1,982,427 + +1.0 1,982,428 - -0.0 1,982,428 - -1.6 1,982,428 - -1.2 1,982,428 - +0.4 1,982,428 - -0.8 1,982,428 - +2.0 1,982,428 - -0.2 1,982,428 - +1.0 1,982,428 - +0.7 1,982,428 - +2.6 1,982,485 + LRK53_RS08830 0.17 -0.5 1,982,485 + LRK53_RS08830 0.17 -1.0 1,982,485 + LRK53_RS08830 0.17 -0.6 1,982,485 + LRK53_RS08830 0.17 -1.3 1,982,486 - LRK53_RS08830 0.17 -0.6 1,982,486 - LRK53_RS08830 0.17 -0.6 1,982,486 - LRK53_RS08830 0.17 -0.3 1,982,543 + LRK53_RS08830 0.33 -1.2 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -1.3 1,982,543 + LRK53_RS08830 0.33 -0.9 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -0.8 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 +2.6 1,982,543 + LRK53_RS08830 0.33 -1.3 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 -1.1 1,982,543 + LRK53_RS08830 0.33 +0.6 1,982,543 + LRK53_RS08830 0.33 +2.0 1,982,543 + LRK53_RS08830 0.33 -0.8 1,982,543 + LRK53_RS08830 0.33 -1.5 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 -0.1 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 -0.1 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -1.6 1,982,543 + LRK53_RS08830 0.33 -1.0 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -0.8 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -0.5 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 -1.1 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 -0.3 1,982,543 + LRK53_RS08830 0.33 +1.2 1,982,543 + LRK53_RS08830 0.33 -1.3 1,982,543 + LRK53_RS08830 0.33 -2.6 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -1.5 1,982,543 + LRK53_RS08830 0.33 -0.7 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 +0.8 1,982,543 + LRK53_RS08830 0.33 +0.3 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 +0.4 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -0.1 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -2.0 1,982,543 + LRK53_RS08830 0.33 -1.3 1,982,543 + LRK53_RS08830 0.33 -1.0 1,982,543 + LRK53_RS08830 0.33 +1.3 1,982,543 + LRK53_RS08830 0.33 -0.3 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -1.8 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 +0.6 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 +0.7 1,982,543 + LRK53_RS08830 0.33 -0.4 1,982,543 + LRK53_RS08830 0.33 -0.2 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -0.3 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 +1.6 1,982,543 + LRK53_RS08830 0.33 -0.3 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -0.0 1,982,543 + LRK53_RS08830 0.33 -0.6 1,982,543 + LRK53_RS08830 0.33 -1.3 1,982,543 + LRK53_RS08830 0.33 -1.2 1,982,543 + LRK53_RS08830 0.33 +1.0 1,982,543 + LRK53_RS08830 0.33 -0.2 1,982,543 + LRK53_RS08830 0.33 -2.3 1,982,543 + LRK53_RS08830 0.33 -0.8 1,982,543 + LRK53_RS08830 0.33 +0.2 1,982,543 + LRK53_RS08830 0.33 -0.4 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -0.8 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 +2.0 1,982,544 - LRK53_RS08830 0.34 -1.0 1,982,544 - LRK53_RS08830 0.34 -0.3 1,982,544 - LRK53_RS08830 0.34 -1.7 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -1.1 1,982,544 - LRK53_RS08830 0.34 -1.0 1,982,544 - LRK53_RS08830 0.34 +2.0 1,982,544 - LRK53_RS08830 0.34 -1.1 1,982,544 - LRK53_RS08830 0.34 -1.4 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -1.2 1,982,544 - LRK53_RS08830 0.34 -1.4 1,982,544 - LRK53_RS08830 0.34 -1.1 1,982,544 - LRK53_RS08830 0.34 -0.6 1,982,544 - LRK53_RS08830 0.34 -0.6 1,982,544 - LRK53_RS08830 0.34 +0.8 1,982,544 - LRK53_RS08830 0.34 -1.3 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -1.1 1,982,544 - LRK53_RS08830 0.34 -0.6 1,982,544 - LRK53_RS08830 0.34 +0.3 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -1.0 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 -1.4 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 -2.0 1,982,544 - LRK53_RS08830 0.34 -0.4 1,982,544 - LRK53_RS08830 0.34 -1.6 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 +0.4 1,982,544 - LRK53_RS08830 0.34 +2.6 1,982,544 - LRK53_RS08830 0.34 +0.4 1,982,544 - LRK53_RS08830 0.34 +0.6 1,982,544 - LRK53_RS08830 0.34 -0.0 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 -0.2 1,982,544 - LRK53_RS08830 0.34 -0.8 1,982,544 - LRK53_RS08830 0.34 -1.3 1,982,544 - LRK53_RS08830 0.34 -1.2 1,982,544 - LRK53_RS08830 0.34 +1.0 1,982,544 - LRK53_RS08830 0.34 -1.6 1,982,544 - LRK53_RS08830 0.34 -2.2 1,982,544 - LRK53_RS08830 0.34 -1.5 1,982,639 - LRK53_RS08830 0.61 +1.6
Or see this region's nucleotide sequence