Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08230

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08220 and LRK53_RS08225 overlap by 8 nucleotidesLRK53_RS08225 and LRK53_RS08230 are separated by 69 nucleotidesLRK53_RS08230 and LRK53_RS08235 are separated by 157 nucleotides LRK53_RS08220: LRK53_RS08220 - HAD family phosphatase, at 1,851,333 to 1,851,962 _RS08220 LRK53_RS08225: LRK53_RS08225 - DeoR/GlpR family DNA-binding transcription regulator, at 1,851,955 to 1,852,752 _RS08225 LRK53_RS08230: LRK53_RS08230 - DUF2147 domain-containing protein, at 1,852,822 to 1,853,286 _RS08230 LRK53_RS08235: LRK53_RS08235 - iron-sulfur cluster carrier protein ApbC, at 1,853,444 to 1,854,538 _RS08235 Position (kb) 1852 1853 1854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.831 kb on + strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.832 kb on - strand, within LRK53_RS08220at 1851.960 kb on + strandat 1851.961 kb on - strandat 1851.961 kb on - strandat 1852.138 kb on + strand, within LRK53_RS08225at 1852.138 kb on + strand, within LRK53_RS08225at 1852.139 kb on - strand, within LRK53_RS08225at 1852.139 kb on - strand, within LRK53_RS08225at 1852.614 kb on + strand, within LRK53_RS08225at 1852.614 kb on + strand, within LRK53_RS08225at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.874 kb on + strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.875 kb on - strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.928 kb on + strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1852.929 kb on - strand, within LRK53_RS08230at 1853.126 kb on + strand, within LRK53_RS08230at 1853.126 kb on + strand, within LRK53_RS08230at 1853.126 kb on + strand, within LRK53_RS08230at 1853.126 kb on + strand, within LRK53_RS08230at 1853.126 kb on + strand, within LRK53_RS08230at 1853.127 kb on - strand, within LRK53_RS08230at 1853.127 kb on - strand, within LRK53_RS08230at 1853.310 kb on + strandat 1853.310 kb on + strandat 1853.409 kb on + strandat 1853.409 kb on + strandat 1853.409 kb on + strandat 1853.409 kb on + strandat 1853.409 kb on + strandat 1853.410 kb on - strandat 1853.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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1,851,831 + LRK53_RS08220 0.79 +0.4
1,851,831 + LRK53_RS08220 0.79 -1.0
1,851,831 + LRK53_RS08220 0.79 -0.0
1,851,831 + LRK53_RS08220 0.79 +1.0
1,851,831 + LRK53_RS08220 0.79 -2.5
1,851,831 + LRK53_RS08220 0.79 -2.0
1,851,831 + LRK53_RS08220 0.79 -3.1
1,851,831 + LRK53_RS08220 0.79 -0.7
1,851,831 + LRK53_RS08220 0.79 -1.0
1,851,831 + LRK53_RS08220 0.79 -0.8
1,851,831 + LRK53_RS08220 0.79 +0.8
1,851,831 + LRK53_RS08220 0.79 -1.8
1,851,831 + LRK53_RS08220 0.79 -0.7
1,851,831 + LRK53_RS08220 0.79 -0.4
1,851,831 + LRK53_RS08220 0.79 +0.4
1,851,832 - LRK53_RS08220 0.79 -1.8
1,851,832 - LRK53_RS08220 0.79 -0.0
1,851,832 - LRK53_RS08220 0.79 -1.0
1,851,832 - LRK53_RS08220 0.79 +1.4
1,851,832 - LRK53_RS08220 0.79 +1.0
1,851,832 - LRK53_RS08220 0.79 -0.0
1,851,832 - LRK53_RS08220 0.79 -0.8
1,851,832 - LRK53_RS08220 0.79 -1.2
1,851,832 - LRK53_RS08220 0.79 -2.9
1,851,832 - LRK53_RS08220 0.79 +1.0
1,851,832 - LRK53_RS08220 0.79 -1.6
1,851,832 - LRK53_RS08220 0.79 -0.0
1,851,832 - LRK53_RS08220 0.79 +1.0
1,851,832 - LRK53_RS08220 0.79 +2.0
1,851,832 - LRK53_RS08220 0.79 -2.9
1,851,960 + -0.7
1,851,961 - -0.0
1,851,961 - -0.9
1,852,138 + LRK53_RS08225 0.23 -1.3
1,852,138 + LRK53_RS08225 0.23 -1.1
1,852,139 - LRK53_RS08225 0.23 -0.8
1,852,139 - LRK53_RS08225 0.23 +0.7
1,852,614 + LRK53_RS08225 0.83 -2.1
1,852,614 + LRK53_RS08225 0.83 +0.3
1,852,874 + LRK53_RS08230 0.11 -1.3
1,852,874 + LRK53_RS08230 0.11 -2.3
1,852,874 + LRK53_RS08230 0.11 -0.9
1,852,874 + LRK53_RS08230 0.11 -1.3
1,852,874 + LRK53_RS08230 0.11 +1.0
1,852,875 - LRK53_RS08230 0.11 -0.0
1,852,875 - LRK53_RS08230 0.11 +1.0
1,852,875 - LRK53_RS08230 0.11 -0.6
1,852,875 - LRK53_RS08230 0.11 +2.0
1,852,875 - LRK53_RS08230 0.11 -1.3
1,852,875 - LRK53_RS08230 0.11 -1.8
1,852,875 - LRK53_RS08230 0.11 -1.6
1,852,875 - LRK53_RS08230 0.11 -1.2
1,852,928 + LRK53_RS08230 0.23 -1.0
1,852,928 + LRK53_RS08230 0.23 -0.7
1,852,928 + LRK53_RS08230 0.23 -0.0
1,852,929 - LRK53_RS08230 0.23 -0.0
1,852,929 - LRK53_RS08230 0.23 -0.8
1,852,929 - LRK53_RS08230 0.23 -1.6
1,852,929 - LRK53_RS08230 0.23 -2.0
1,853,126 + LRK53_RS08230 0.65 -0.6
1,853,126 + LRK53_RS08230 0.65 -0.6
1,853,126 + LRK53_RS08230 0.65 -2.1
1,853,126 + LRK53_RS08230 0.65 +2.0
1,853,126 + LRK53_RS08230 0.65 -0.0
1,853,127 - LRK53_RS08230 0.66 +1.0
1,853,127 - LRK53_RS08230 0.66 -0.3
1,853,310 + -0.3
1,853,310 + +1.0
1,853,409 + -1.0
1,853,409 + -0.6
1,853,409 + -0.3
1,853,409 + +1.0
1,853,409 + -0.4
1,853,410 - -1.0
1,853,410 - -1.0

Or see this region's nucleotide sequence