Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07625

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07620 and LRK53_RS07625 are separated by 185 nucleotidesLRK53_RS07625 and LRK53_RS07630 overlap by 4 nucleotides LRK53_RS07620: LRK53_RS07620 - kynureninase, at 1,702,712 to 1,703,992 _RS07620 LRK53_RS07625: LRK53_RS07625 - hypothetical protein, at 1,704,178 to 1,704,696 _RS07625 LRK53_RS07630: LRK53_RS07630 - amidohydrolase, at 1,704,693 to 1,705,727 _RS07630 Position (kb) 1704 1705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1703.253 kb on + strand, within LRK53_RS07620at 1703.253 kb on + strand, within LRK53_RS07620at 1703.253 kb on + strand, within LRK53_RS07620at 1703.253 kb on + strand, within LRK53_RS07620at 1703.253 kb on + strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.254 kb on - strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.259 kb on + strand, within LRK53_RS07620at 1703.260 kb on - strand, within LRK53_RS07620at 1703.260 kb on - strand, within LRK53_RS07620at 1703.260 kb on - strand, within LRK53_RS07620at 1703.409 kb on + strand, within LRK53_RS07620at 1703.409 kb on + strand, within LRK53_RS07620at 1703.409 kb on + strand, within LRK53_RS07620at 1703.410 kb on - strand, within LRK53_RS07620at 1703.575 kb on - strand, within LRK53_RS07620at 1703.637 kb on + strand, within LRK53_RS07620at 1703.638 kb on - strand, within LRK53_RS07620at 1703.638 kb on - strand, within LRK53_RS07620at 1703.749 kb on - strand, within LRK53_RS07620at 1703.749 kb on - strand, within LRK53_RS07620at 1703.749 kb on - strand, within LRK53_RS07620at 1703.805 kb on + strand, within LRK53_RS07620at 1703.805 kb on + strand, within LRK53_RS07620at 1703.805 kb on + strand, within LRK53_RS07620at 1703.805 kb on + strand, within LRK53_RS07620at 1703.806 kb on - strand, within LRK53_RS07620at 1703.806 kb on - strand, within LRK53_RS07620at 1703.806 kb on - strand, within LRK53_RS07620at 1703.874 kb on + strandat 1703.874 kb on + strandat 1703.875 kb on - strandat 1703.875 kb on - strandat 1703.875 kb on - strandat 1703.875 kb on - strandat 1704.103 kb on + strandat 1704.103 kb on + strandat 1704.103 kb on + strandat 1704.104 kb on - strandat 1704.104 kb on - strandat 1704.114 kb on + strandat 1704.114 kb on + strandat 1704.114 kb on + strandat 1704.114 kb on + strandat 1704.114 kb on + strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.115 kb on - strandat 1704.179 kb on + strandat 1704.179 kb on + strandat 1704.179 kb on + strandat 1704.179 kb on + strandat 1704.180 kb on - strandat 1704.180 kb on - strandat 1704.180 kb on - strandat 1704.180 kb on - strandat 1704.180 kb on - strandat 1704.302 kb on + strand, within LRK53_RS07625at 1704.303 kb on - strand, within LRK53_RS07625at 1704.303 kb on - strand, within LRK53_RS07625at 1704.303 kb on - strand, within LRK53_RS07625at 1704.303 kb on - strand, within LRK53_RS07625at 1704.314 kb on + strand, within LRK53_RS07625at 1704.314 kb on + strand, within LRK53_RS07625at 1704.315 kb on - strand, within LRK53_RS07625at 1704.315 kb on - strand, within LRK53_RS07625at 1704.347 kb on + strand, within LRK53_RS07625at 1704.347 kb on + strand, within LRK53_RS07625at 1704.347 kb on + strand, within LRK53_RS07625at 1704.348 kb on - strand, within LRK53_RS07625at 1704.348 kb on - strand, within LRK53_RS07625at 1704.348 kb on - strand, within LRK53_RS07625at 1704.389 kb on + strand, within LRK53_RS07625at 1704.390 kb on - strand, within LRK53_RS07625at 1704.853 kb on + strand, within LRK53_RS07630at 1704.853 kb on + strand, within LRK53_RS07630at 1704.853 kb on + strand, within LRK53_RS07630at 1704.853 kb on + strand, within LRK53_RS07630at 1704.854 kb on - strand, within LRK53_RS07630at 1704.901 kb on + strand, within LRK53_RS07630at 1704.901 kb on + strand, within LRK53_RS07630at 1704.901 kb on + strand, within LRK53_RS07630at 1704.901 kb on + strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.902 kb on - strand, within LRK53_RS07630at 1704.941 kb on - strand, within LRK53_RS07630at 1704.941 kb on - strand, within LRK53_RS07630at 1704.941 kb on - strand, within LRK53_RS07630at 1704.955 kb on + strand, within LRK53_RS07630at 1704.955 kb on + strand, within LRK53_RS07630at 1704.955 kb on + strand, within LRK53_RS07630at 1704.955 kb on + strand, within LRK53_RS07630at 1704.956 kb on - strand, within LRK53_RS07630at 1704.956 kb on - strand, within LRK53_RS07630at 1705.036 kb on + strand, within LRK53_RS07630at 1705.036 kb on + strand, within LRK53_RS07630at 1705.036 kb on + strand, within LRK53_RS07630at 1705.037 kb on - strand, within LRK53_RS07630at 1705.037 kb on - strand, within LRK53_RS07630at 1705.037 kb on - strand, within LRK53_RS07630at 1705.037 kb on - strand, within LRK53_RS07630at 1705.037 kb on - strand, within LRK53_RS07630at 1705.074 kb on + strand, within LRK53_RS07630at 1705.074 kb on + strand, within LRK53_RS07630at 1705.074 kb on + strand, within LRK53_RS07630at 1705.074 kb on + strand, within LRK53_RS07630at 1705.074 kb on + strand, within LRK53_RS07630at 1705.075 kb on - strand, within LRK53_RS07630at 1705.075 kb on - strand, within LRK53_RS07630at 1705.075 kb on - strand, within LRK53_RS07630at 1705.168 kb on + strand, within LRK53_RS07630at 1705.169 kb on - strand, within LRK53_RS07630at 1705.169 kb on - strand, within LRK53_RS07630at 1705.169 kb on - strand, within LRK53_RS07630at 1705.169 kb on - strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.386 kb on + strand, within LRK53_RS07630at 1705.387 kb on - strand, within LRK53_RS07630at 1705.387 kb on - strand, within LRK53_RS07630at 1705.387 kb on - strand, within LRK53_RS07630at 1705.396 kb on + strand, within LRK53_RS07630at 1705.396 kb on + strand, within LRK53_RS07630at 1705.397 kb on - strand, within LRK53_RS07630at 1705.484 kb on - strand, within LRK53_RS07630at 1705.540 kb on + strand, within LRK53_RS07630at 1705.540 kb on + strand, within LRK53_RS07630at 1705.540 kb on + strand, within LRK53_RS07630at 1705.541 kb on - strand, within LRK53_RS07630at 1705.541 kb on - strand, within LRK53_RS07630at 1705.541 kb on - strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.609 kb on + strand, within LRK53_RS07630at 1705.610 kb on - strand, within LRK53_RS07630at 1705.610 kb on - strand, within LRK53_RS07630at 1705.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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1,703,253 + LRK53_RS07620 0.42 +0.0
1,703,253 + LRK53_RS07620 0.42 +0.6
1,703,253 + LRK53_RS07620 0.42 +0.0
1,703,253 + LRK53_RS07620 0.42 -0.6
1,703,253 + LRK53_RS07620 0.42 +1.0
1,703,254 - LRK53_RS07620 0.42 -1.1
1,703,254 - LRK53_RS07620 0.42 -0.6
1,703,254 - LRK53_RS07620 0.42 -0.3
1,703,254 - LRK53_RS07620 0.42 +0.7
1,703,254 - LRK53_RS07620 0.42 -2.3
1,703,254 - LRK53_RS07620 0.42 -0.1
1,703,254 - LRK53_RS07620 0.42 -0.2
1,703,254 - LRK53_RS07620 0.42 -1.0
1,703,254 - LRK53_RS07620 0.42 -0.3
1,703,254 - LRK53_RS07620 0.42 -0.9
1,703,254 - LRK53_RS07620 0.42 +0.0
1,703,254 - LRK53_RS07620 0.42 -0.2
1,703,259 + LRK53_RS07620 0.43 +1.0
1,703,259 + LRK53_RS07620 0.43 +1.0
1,703,259 + LRK53_RS07620 0.43 +1.0
1,703,259 + LRK53_RS07620 0.43 -0.6
1,703,259 + LRK53_RS07620 0.43 -0.9
1,703,259 + LRK53_RS07620 0.43 -0.1
1,703,259 + LRK53_RS07620 0.43 +1.6
1,703,259 + LRK53_RS07620 0.43 -0.6
1,703,260 - LRK53_RS07620 0.43 -1.5
1,703,260 - LRK53_RS07620 0.43 -0.9
1,703,260 - LRK53_RS07620 0.43 -1.6
1,703,409 + LRK53_RS07620 0.54 +0.0
1,703,409 + LRK53_RS07620 0.54 -0.6
1,703,409 + LRK53_RS07620 0.54 -1.8
1,703,410 - LRK53_RS07620 0.54 +1.0
1,703,575 - LRK53_RS07620 0.67 -0.6
1,703,637 + LRK53_RS07620 0.72 +1.0
1,703,638 - LRK53_RS07620 0.72 -0.8
1,703,638 - LRK53_RS07620 0.72 -1.6
1,703,749 - LRK53_RS07620 0.81 +1.6
1,703,749 - LRK53_RS07620 0.81 -1.2
1,703,749 - LRK53_RS07620 0.81 +0.8
1,703,805 + LRK53_RS07620 0.85 -0.7
1,703,805 + LRK53_RS07620 0.85 +0.0
1,703,805 + LRK53_RS07620 0.85 +0.6
1,703,805 + LRK53_RS07620 0.85 +2.0
1,703,806 - LRK53_RS07620 0.85 +0.0
1,703,806 - LRK53_RS07620 0.85 +0.3
1,703,806 - LRK53_RS07620 0.85 +0.5
1,703,874 + +1.0
1,703,874 + +0.4
1,703,875 - +1.0
1,703,875 - +1.0
1,703,875 - -1.0
1,703,875 - +0.0
1,704,103 + -1.3
1,704,103 + -0.5
1,704,103 + -0.3
1,704,104 - +0.4
1,704,104 - -1.6
1,704,114 + -0.6
1,704,114 + -1.0
1,704,114 + -1.0
1,704,114 + -0.6
1,704,114 + -0.6
1,704,115 - -1.6
1,704,115 - -1.7
1,704,115 - +1.0
1,704,115 - -1.0
1,704,115 - +0.0
1,704,115 - +1.7
1,704,115 - -1.8
1,704,115 - -0.4
1,704,115 - -1.0
1,704,115 - +0.0
1,704,115 - -0.6
1,704,179 + -0.3
1,704,179 + +0.2
1,704,179 + -0.2
1,704,179 + -0.3
1,704,180 - -2.2
1,704,180 - -1.7
1,704,180 - -0.2
1,704,180 - +1.0
1,704,180 - -0.1
1,704,302 + LRK53_RS07625 0.24 -2.0
1,704,303 - LRK53_RS07625 0.24 -1.2
1,704,303 - LRK53_RS07625 0.24 +0.0
1,704,303 - LRK53_RS07625 0.24 -0.8
1,704,303 - LRK53_RS07625 0.24 +0.0
1,704,314 + LRK53_RS07625 0.26 +0.0
1,704,314 + LRK53_RS07625 0.26 -0.3
1,704,315 - LRK53_RS07625 0.26 +1.0
1,704,315 - LRK53_RS07625 0.26 -1.3
1,704,347 + LRK53_RS07625 0.33 -1.3
1,704,347 + LRK53_RS07625 0.33 -1.3
1,704,347 + LRK53_RS07625 0.33 +0.6
1,704,348 - LRK53_RS07625 0.33 -0.8
1,704,348 - LRK53_RS07625 0.33 -0.3
1,704,348 - LRK53_RS07625 0.33 -1.3
1,704,389 + LRK53_RS07625 0.41 -2.8
1,704,390 - LRK53_RS07625 0.41 -0.5
1,704,853 + LRK53_RS07630 0.15 -0.7
1,704,853 + LRK53_RS07630 0.15 +2.0
1,704,853 + LRK53_RS07630 0.15 -1.3
1,704,853 + LRK53_RS07630 0.15 +0.0
1,704,854 - LRK53_RS07630 0.16 +1.0
1,704,901 + LRK53_RS07630 0.20 +0.0
1,704,901 + LRK53_RS07630 0.20 +1.6
1,704,901 + LRK53_RS07630 0.20 -0.6
1,704,901 + LRK53_RS07630 0.20 +1.6
1,704,902 - LRK53_RS07630 0.20 -0.3
1,704,902 - LRK53_RS07630 0.20 +0.4
1,704,902 - LRK53_RS07630 0.20 +0.0
1,704,902 - LRK53_RS07630 0.20 -0.6
1,704,902 - LRK53_RS07630 0.20 +0.0
1,704,902 - LRK53_RS07630 0.20 -0.6
1,704,902 - LRK53_RS07630 0.20 -1.4
1,704,941 - LRK53_RS07630 0.24 +2.6
1,704,941 - LRK53_RS07630 0.24 -1.3
1,704,941 - LRK53_RS07630 0.24 -0.7
1,704,955 + LRK53_RS07630 0.25 +0.4
1,704,955 + LRK53_RS07630 0.25 +1.0
1,704,955 + LRK53_RS07630 0.25 -2.0
1,704,955 + LRK53_RS07630 0.25 +2.6
1,704,956 - LRK53_RS07630 0.25 -1.0
1,704,956 - LRK53_RS07630 0.25 -0.6
1,705,036 + LRK53_RS07630 0.33 -1.6
1,705,036 + LRK53_RS07630 0.33 +0.0
1,705,036 + LRK53_RS07630 0.33 -0.6
1,705,037 - LRK53_RS07630 0.33 +0.1
1,705,037 - LRK53_RS07630 0.33 +2.0
1,705,037 - LRK53_RS07630 0.33 +0.0
1,705,037 - LRK53_RS07630 0.33 +2.0
1,705,037 - LRK53_RS07630 0.33 -0.3
1,705,074 + LRK53_RS07630 0.37 +1.2
1,705,074 + LRK53_RS07630 0.37 +0.0
1,705,074 + LRK53_RS07630 0.37 +0.4
1,705,074 + LRK53_RS07630 0.37 +0.0
1,705,074 + LRK53_RS07630 0.37 +0.4
1,705,075 - LRK53_RS07630 0.37 +1.0
1,705,075 - LRK53_RS07630 0.37 +1.0
1,705,075 - LRK53_RS07630 0.37 -0.4
1,705,168 + LRK53_RS07630 0.46 -0.6
1,705,169 - LRK53_RS07630 0.46 -0.1
1,705,169 - LRK53_RS07630 0.46 -1.6
1,705,169 - LRK53_RS07630 0.46 +0.2
1,705,169 - LRK53_RS07630 0.46 -1.0
1,705,386 + LRK53_RS07630 0.67 -0.6
1,705,386 + LRK53_RS07630 0.67 +0.0
1,705,386 + LRK53_RS07630 0.67 -1.6
1,705,386 + LRK53_RS07630 0.67 +0.1
1,705,386 + LRK53_RS07630 0.67 -1.8
1,705,386 + LRK53_RS07630 0.67 -0.6
1,705,386 + LRK53_RS07630 0.67 -1.2
1,705,386 + LRK53_RS07630 0.67 -0.6
1,705,386 + LRK53_RS07630 0.67 -1.3
1,705,387 - LRK53_RS07630 0.67 +0.5
1,705,387 - LRK53_RS07630 0.67 +0.7
1,705,387 - LRK53_RS07630 0.67 -1.0
1,705,396 + LRK53_RS07630 0.68 -0.2
1,705,396 + LRK53_RS07630 0.68 +0.5
1,705,397 - LRK53_RS07630 0.68 +1.0
1,705,484 - LRK53_RS07630 0.76 -1.1
1,705,540 + LRK53_RS07630 0.82 -0.6
1,705,540 + LRK53_RS07630 0.82 -0.2
1,705,540 + LRK53_RS07630 0.82 +0.3
1,705,541 - LRK53_RS07630 0.82 -1.7
1,705,541 - LRK53_RS07630 0.82 +0.6
1,705,541 - LRK53_RS07630 0.82 -0.5
1,705,609 + LRK53_RS07630 0.89 -0.3
1,705,609 + LRK53_RS07630 0.89 +0.4
1,705,609 + LRK53_RS07630 0.89 +0.0
1,705,609 + LRK53_RS07630 0.89 -0.7
1,705,609 + LRK53_RS07630 0.89 -0.3
1,705,609 + LRK53_RS07630 0.89 -0.6
1,705,610 - LRK53_RS07630 0.89 +1.0
1,705,610 - LRK53_RS07630 0.89 +2.6
1,705,632 - +0.0

Or see this region's nucleotide sequence