Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07020 and LRK53_RS07025 overlap by 4 nucleotides LRK53_RS07025 and LRK53_RS07030 are separated by 5 nucleotides LRK53_RS07030 and LRK53_RS07035 are separated by 136 nucleotides
LRK53_RS07020: LRK53_RS07020 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,579,825 to 1,580,793
_RS07020
LRK53_RS07025: LRK53_RS07025 - ABC transporter ATP-binding protein, at 1,580,790 to 1,581,539
_RS07025
LRK53_RS07030: LRK53_RS07030 - ABC transporter permease, at 1,581,545 to 1,582,675
_RS07030
LRK53_RS07035: LRK53_RS07035 - TolC family protein, at 1,582,812 to 1,584,200
_RS07035
Position (kb) 1581
1582
1583 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1580.847 kb on + strand at 1580.847 kb on + strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.848 kb on - strand at 1580.924 kb on + strand, within LRK53_RS07025 at 1580.924 kb on + strand, within LRK53_RS07025 at 1580.937 kb on - strand, within LRK53_RS07025 at 1581.547 kb on - strand at 1581.547 kb on - strand at 1581.816 kb on + strand, within LRK53_RS07030 at 1581.939 kb on + strand, within LRK53_RS07030 at 1581.940 kb on - strand, within LRK53_RS07030 at 1581.982 kb on + strand, within LRK53_RS07030 at 1581.982 kb on + strand, within LRK53_RS07030 at 1581.982 kb on + strand, within LRK53_RS07030 at 1581.983 kb on - strand, within LRK53_RS07030 at 1581.984 kb on + strand, within LRK53_RS07030 at 1581.984 kb on + strand, within LRK53_RS07030 at 1581.984 kb on + strand, within LRK53_RS07030 at 1581.984 kb on + strand, within LRK53_RS07030 at 1581.985 kb on - strand, within LRK53_RS07030 at 1581.985 kb on - strand, within LRK53_RS07030 at 1581.985 kb on - strand, within LRK53_RS07030 at 1581.985 kb on - strand, within LRK53_RS07030 at 1582.065 kb on + strand, within LRK53_RS07030 at 1582.065 kb on + strand, within LRK53_RS07030 at 1582.065 kb on + strand, within LRK53_RS07030 at 1582.065 kb on + strand, within LRK53_RS07030 at 1582.066 kb on - strand, within LRK53_RS07030 at 1582.066 kb on - strand, within LRK53_RS07030 at 1582.066 kb on - strand, within LRK53_RS07030 at 1582.179 kb on - strand, within LRK53_RS07030 at 1582.404 kb on + strand, within LRK53_RS07030 at 1582.404 kb on + strand, within LRK53_RS07030 at 1582.405 kb on - strand, within LRK53_RS07030 at 1582.405 kb on - strand, within LRK53_RS07030 at 1582.405 kb on - strand, within LRK53_RS07030 at 1582.405 kb on - strand, within LRK53_RS07030 at 1582.405 kb on - strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.511 kb on + strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.512 kb on - strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.536 kb on + strand, within LRK53_RS07030 at 1582.537 kb on - strand, within LRK53_RS07030 at 1582.537 kb on - strand, within LRK53_RS07030 at 1582.537 kb on - strand, within LRK53_RS07030 at 1582.537 kb on - strand, within LRK53_RS07030 at 1582.644 kb on + strand at 1582.645 kb on - strand at 1582.645 kb on - strand at 1582.645 kb on - strand at 1582.913 kb on - strand at 1582.913 kb on - strand at 1582.913 kb on - strand at 1582.913 kb on - strand at 1582.944 kb on + strand at 1582.944 kb on + strand at 1582.945 kb on - strand at 1583.018 kb on + strand, within LRK53_RS07035 at 1583.018 kb on + strand, within LRK53_RS07035 at 1583.019 kb on - strand, within LRK53_RS07035 at 1583.019 kb on - strand, within LRK53_RS07035 at 1583.019 kb on - strand, within LRK53_RS07035 at 1583.049 kb on + strand, within LRK53_RS07035 at 1583.049 kb on + strand, within LRK53_RS07035 at 1583.049 kb on + strand, within LRK53_RS07035 at 1583.050 kb on - strand, within LRK53_RS07035 at 1583.050 kb on - strand, within LRK53_RS07035
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 1,580,847 + +0.4 1,580,847 + +0.0 1,580,848 - -0.6 1,580,848 - +1.0 1,580,848 - +2.0 1,580,848 - -1.8 1,580,848 - +0.0 1,580,848 - -0.8 1,580,848 - +1.0 1,580,848 - +0.0 1,580,924 + LRK53_RS07025 0.18 +0.3 1,580,924 + LRK53_RS07025 0.18 -0.3 1,580,937 - LRK53_RS07025 0.20 +0.7 1,581,547 - -1.0 1,581,547 - -2.3 1,581,816 + LRK53_RS07030 0.24 +2.6 1,581,939 + LRK53_RS07030 0.35 +0.4 1,581,940 - LRK53_RS07030 0.35 +1.0 1,581,982 + LRK53_RS07030 0.39 -1.0 1,581,982 + LRK53_RS07030 0.39 -1.0 1,581,982 + LRK53_RS07030 0.39 -0.3 1,581,983 - LRK53_RS07030 0.39 -0.6 1,581,984 + LRK53_RS07030 0.39 +2.0 1,581,984 + LRK53_RS07030 0.39 -0.6 1,581,984 + LRK53_RS07030 0.39 -1.0 1,581,984 + LRK53_RS07030 0.39 +0.7 1,581,985 - LRK53_RS07030 0.39 +1.0 1,581,985 - LRK53_RS07030 0.39 +1.0 1,581,985 - LRK53_RS07030 0.39 -0.2 1,581,985 - LRK53_RS07030 0.39 -1.0 1,582,065 + LRK53_RS07030 0.46 -1.9 1,582,065 + LRK53_RS07030 0.46 +0.0 1,582,065 + LRK53_RS07030 0.46 -1.0 1,582,065 + LRK53_RS07030 0.46 +1.0 1,582,066 - LRK53_RS07030 0.46 +0.0 1,582,066 - LRK53_RS07030 0.46 -0.6 1,582,066 - LRK53_RS07030 0.46 -1.3 1,582,179 - LRK53_RS07030 0.56 +1.0 1,582,404 + LRK53_RS07030 0.76 -0.6 1,582,404 + LRK53_RS07030 0.76 -0.6 1,582,405 - LRK53_RS07030 0.76 +0.2 1,582,405 - LRK53_RS07030 0.76 +0.0 1,582,405 - LRK53_RS07030 0.76 -1.0 1,582,405 - LRK53_RS07030 0.76 -1.0 1,582,405 - LRK53_RS07030 0.76 +1.0 1,582,511 + LRK53_RS07030 0.85 +1.0 1,582,511 + LRK53_RS07030 0.85 +0.4 1,582,511 + LRK53_RS07030 0.85 -1.5 1,582,511 + LRK53_RS07030 0.85 +1.0 1,582,511 + LRK53_RS07030 0.85 -1.6 1,582,511 + LRK53_RS07030 0.85 +0.0 1,582,512 - LRK53_RS07030 0.85 +0.4 1,582,512 - LRK53_RS07030 0.85 -1.0 1,582,512 - LRK53_RS07030 0.85 -1.0 1,582,512 - LRK53_RS07030 0.85 -2.2 1,582,512 - LRK53_RS07030 0.85 +0.0 1,582,512 - LRK53_RS07030 0.85 +1.0 1,582,512 - LRK53_RS07030 0.85 -0.3 1,582,512 - LRK53_RS07030 0.85 +1.0 1,582,512 - LRK53_RS07030 0.85 +1.0 1,582,536 + LRK53_RS07030 0.88 -1.6 1,582,536 + LRK53_RS07030 0.88 -1.8 1,582,536 + LRK53_RS07030 0.88 -0.6 1,582,536 + LRK53_RS07030 0.88 -2.0 1,582,536 + LRK53_RS07030 0.88 -0.3 1,582,536 + LRK53_RS07030 0.88 -1.0 1,582,536 + LRK53_RS07030 0.88 -1.0 1,582,537 - LRK53_RS07030 0.88 -1.0 1,582,537 - LRK53_RS07030 0.88 -1.6 1,582,537 - LRK53_RS07030 0.88 +0.0 1,582,537 - LRK53_RS07030 0.88 +1.0 1,582,644 + +0.0 1,582,645 - +1.0 1,582,645 - -0.6 1,582,645 - -1.8 1,582,913 - -1.3 1,582,913 - +0.2 1,582,913 - +1.6 1,582,913 - +0.0 1,582,944 + +0.0 1,582,944 + +1.0 1,582,945 - +1.0 1,583,018 + LRK53_RS07035 0.15 -0.2 1,583,018 + LRK53_RS07035 0.15 +1.0 1,583,019 - LRK53_RS07035 0.15 +0.5 1,583,019 - LRK53_RS07035 0.15 -0.9 1,583,019 - LRK53_RS07035 0.15 +0.0 1,583,049 + LRK53_RS07035 0.17 +0.4 1,583,049 + LRK53_RS07035 0.17 +0.0 1,583,049 + LRK53_RS07035 0.17 -0.6 1,583,050 - LRK53_RS07035 0.17 +1.0 1,583,050 - LRK53_RS07035 0.17 +1.0
Or see this region's nucleotide sequence