Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06925

Experiment: pH4.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS06920 and LRK53_RS06925 are separated by 140 nucleotidesLRK53_RS06925 and LRK53_RS06930 are separated by 53 nucleotides LRK53_RS06920: LRK53_RS06920 - MipA/OmpV family protein, at 1,562,279 to 1,563,064 _RS06920 LRK53_RS06925: LRK53_RS06925 - MtnX-like HAD-IB family phosphatase, at 1,563,205 to 1,563,906 _RS06925 LRK53_RS06930: LRK53_RS06930 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,563,960 to 1,565,363 _RS06930 Position (kb) 1563 1564Strain fitness (log2 ratio) -2 -1 0 1 2at 1562.225 kb on - strandat 1562.290 kb on - strandat 1562.331 kb on + strandat 1562.405 kb on - strand, within LRK53_RS06920at 1562.405 kb on - strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.610 kb on + strand, within LRK53_RS06920at 1562.622 kb on + strand, within LRK53_RS06920at 1562.622 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.809 kb on + strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.810 kb on - strand, within LRK53_RS06920at 1562.886 kb on + strand, within LRK53_RS06920at 1562.886 kb on + strand, within LRK53_RS06920at 1562.887 kb on - strand, within LRK53_RS06920at 1562.887 kb on - strand, within LRK53_RS06920at 1563.077 kb on + strandat 1563.077 kb on + strandat 1563.077 kb on + strandat 1563.078 kb on - strandat 1563.078 kb on - strandat 1563.078 kb on - strandat 1563.535 kb on + strand, within LRK53_RS06925at 1563.799 kb on + strand, within LRK53_RS06925at 1563.799 kb on + strand, within LRK53_RS06925at 1563.799 kb on + strand, within LRK53_RS06925at 1563.799 kb on + strand, within LRK53_RS06925at 1563.799 kb on + strand, within LRK53_RS06925at 1563.800 kb on - strand, within LRK53_RS06925at 1564.029 kb on + strandat 1564.029 kb on + strandat 1564.030 kb on - strandat 1564.056 kb on + strandat 1564.056 kb on + strandat 1564.057 kb on - strandat 1564.057 kb on - strandat 1564.060 kb on + strandat 1564.098 kb on + strandat 1564.098 kb on + strandat 1564.099 kb on - strandat 1564.374 kb on + strand, within LRK53_RS06930at 1564.458 kb on + strand, within LRK53_RS06930at 1564.558 kb on - strand, within LRK53_RS06930at 1564.605 kb on + strand, within LRK53_RS06930at 1564.644 kb on + strand, within LRK53_RS06930at 1564.656 kb on + strand, within LRK53_RS06930at 1564.686 kb on + strand, within LRK53_RS06930at 1564.686 kb on + strand, within LRK53_RS06930at 1564.740 kb on + strand, within LRK53_RS06930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
remove
1,562,225 - -0.1
1,562,290 - -1.8
1,562,331 + -0.4
1,562,405 - LRK53_RS06920 0.16 -1.0
1,562,405 - LRK53_RS06920 0.16 -0.7
1,562,610 + LRK53_RS06920 0.42 -1.0
1,562,610 + LRK53_RS06920 0.42 -1.0
1,562,610 + LRK53_RS06920 0.42 +0.0
1,562,622 + LRK53_RS06920 0.44 +0.6
1,562,622 + LRK53_RS06920 0.44 +0.6
1,562,809 + LRK53_RS06920 0.67 -1.6
1,562,809 + LRK53_RS06920 0.67 -1.2
1,562,809 + LRK53_RS06920 0.67 +0.0
1,562,809 + LRK53_RS06920 0.67 -1.6
1,562,809 + LRK53_RS06920 0.67 +0.7
1,562,809 + LRK53_RS06920 0.67 +0.0
1,562,809 + LRK53_RS06920 0.67 +0.4
1,562,809 + LRK53_RS06920 0.67 -0.6
1,562,809 + LRK53_RS06920 0.67 +0.0
1,562,809 + LRK53_RS06920 0.67 +0.0
1,562,809 + LRK53_RS06920 0.67 -1.2
1,562,809 + LRK53_RS06920 0.67 -0.1
1,562,809 + LRK53_RS06920 0.67 -1.5
1,562,809 + LRK53_RS06920 0.67 +0.0
1,562,809 + LRK53_RS06920 0.67 -1.6
1,562,809 + LRK53_RS06920 0.67 -0.4
1,562,809 + LRK53_RS06920 0.67 -0.8
1,562,810 - LRK53_RS06920 0.68 -1.6
1,562,810 - LRK53_RS06920 0.68 -1.8
1,562,810 - LRK53_RS06920 0.68 -0.7
1,562,810 - LRK53_RS06920 0.68 -0.6
1,562,810 - LRK53_RS06920 0.68 -1.6
1,562,810 - LRK53_RS06920 0.68 -0.8
1,562,810 - LRK53_RS06920 0.68 +1.0
1,562,810 - LRK53_RS06920 0.68 -1.3
1,562,810 - LRK53_RS06920 0.68 +1.0
1,562,810 - LRK53_RS06920 0.68 -2.1
1,562,810 - LRK53_RS06920 0.68 +0.4
1,562,810 - LRK53_RS06920 0.68 -1.1
1,562,810 - LRK53_RS06920 0.68 +0.4
1,562,810 - LRK53_RS06920 0.68 +1.6
1,562,810 - LRK53_RS06920 0.68 +0.0
1,562,810 - LRK53_RS06920 0.68 +0.0
1,562,810 - LRK53_RS06920 0.68 -1.6
1,562,810 - LRK53_RS06920 0.68 +0.2
1,562,886 + LRK53_RS06920 0.77 +1.6
1,562,886 + LRK53_RS06920 0.77 -1.8
1,562,887 - LRK53_RS06920 0.77 +1.0
1,562,887 - LRK53_RS06920 0.77 +0.0
1,563,077 + +1.0
1,563,077 + +2.0
1,563,077 + -0.5
1,563,078 - -2.7
1,563,078 - +1.0
1,563,078 - +0.0
1,563,535 + LRK53_RS06925 0.47 +1.0
1,563,799 + LRK53_RS06925 0.85 -1.3
1,563,799 + LRK53_RS06925 0.85 +1.0
1,563,799 + LRK53_RS06925 0.85 +0.0
1,563,799 + LRK53_RS06925 0.85 -1.3
1,563,799 + LRK53_RS06925 0.85 -0.3
1,563,800 - LRK53_RS06925 0.85 -1.0
1,564,029 + -1.3
1,564,029 + -0.6
1,564,030 - -1.8
1,564,056 + -1.0
1,564,056 + -0.6
1,564,057 - -0.3
1,564,057 - -2.7
1,564,060 + +0.6
1,564,098 + +0.4
1,564,098 + -0.6
1,564,099 - -1.0
1,564,374 + LRK53_RS06930 0.29 +1.0
1,564,458 + LRK53_RS06930 0.35 -0.2
1,564,558 - LRK53_RS06930 0.43 -1.6
1,564,605 + LRK53_RS06930 0.46 +0.4
1,564,644 + LRK53_RS06930 0.49 +1.0
1,564,656 + LRK53_RS06930 0.50 +0.0
1,564,686 + LRK53_RS06930 0.52 -1.0
1,564,686 + LRK53_RS06930 0.52 +0.0
1,564,740 + LRK53_RS06930 0.56 +0.4

Or see this region's nucleotide sequence