Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06155

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06150 and LRK53_RS06155 are separated by 62 nucleotidesLRK53_RS06155 and LRK53_RS06160 overlap by 4 nucleotidesLRK53_RS06160 and LRK53_RS06165 are separated by 106 nucleotides LRK53_RS06150: LRK53_RS06150 - PEP-CTERM sorting domain-containing protein, at 1,412,742 to 1,413,581 _RS06150 LRK53_RS06155: LRK53_RS06155 - DUF2069 domain-containing protein, at 1,413,644 to 1,414,015 _RS06155 LRK53_RS06160: LRK53_RS06160 - NAD(P)H:quinone oxidoreductase, at 1,414,012 to 1,414,614 _RS06160 LRK53_RS06165: LRK53_RS06165 - YihY family inner membrane protein, at 1,414,721 to 1,415,998 _RS06165 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1412.723 kb on + strandat 1412.728 kb on - strandat 1412.754 kb on + strandat 1412.755 kb on + strandat 1412.755 kb on + strandat 1412.755 kb on + strandat 1412.755 kb on + strandat 1412.755 kb on + strandat 1412.755 kb on + strandat 1412.756 kb on - strandat 1412.756 kb on - strandat 1412.756 kb on - strandat 1412.756 kb on - strandat 1412.876 kb on + strand, within LRK53_RS06150at 1412.876 kb on + strand, within LRK53_RS06150at 1412.876 kb on + strand, within LRK53_RS06150at 1412.877 kb on - strand, within LRK53_RS06150at 1412.905 kb on - strand, within LRK53_RS06150at 1412.996 kb on + strand, within LRK53_RS06150at 1412.997 kb on - strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.042 kb on + strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.043 kb on - strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.054 kb on + strand, within LRK53_RS06150at 1413.055 kb on - strand, within LRK53_RS06150at 1413.055 kb on - strand, within LRK53_RS06150at 1413.055 kb on - strand, within LRK53_RS06150at 1413.138 kb on + strand, within LRK53_RS06150at 1413.138 kb on + strand, within LRK53_RS06150at 1413.138 kb on + strand, within LRK53_RS06150at 1413.138 kb on + strand, within LRK53_RS06150at 1413.139 kb on - strand, within LRK53_RS06150at 1413.139 kb on - strand, within LRK53_RS06150at 1413.139 kb on - strand, within LRK53_RS06150at 1413.139 kb on - strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.174 kb on + strand, within LRK53_RS06150at 1413.175 kb on - strand, within LRK53_RS06150at 1413.175 kb on - strand, within LRK53_RS06150at 1413.175 kb on - strand, within LRK53_RS06150at 1413.332 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.335 kb on + strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.336 kb on - strand, within LRK53_RS06150at 1413.357 kb on + strand, within LRK53_RS06150at 1413.357 kb on + strand, within LRK53_RS06150at 1413.358 kb on - strand, within LRK53_RS06150at 1413.358 kb on - strand, within LRK53_RS06150at 1413.358 kb on - strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.402 kb on + strand, within LRK53_RS06150at 1413.403 kb on - strand, within LRK53_RS06150at 1413.403 kb on - strand, within LRK53_RS06150at 1413.403 kb on - strand, within LRK53_RS06150at 1413.403 kb on - strand, within LRK53_RS06150at 1413.403 kb on - strand, within LRK53_RS06150at 1413.458 kb on + strand, within LRK53_RS06150at 1413.459 kb on - strand, within LRK53_RS06150at 1413.459 kb on - strand, within LRK53_RS06150at 1413.459 kb on - strand, within LRK53_RS06150at 1413.514 kb on + strandat 1413.514 kb on + strandat 1413.514 kb on + strandat 1413.515 kb on - strandat 1413.548 kb on + strandat 1413.548 kb on + strandat 1413.549 kb on - strandat 1413.549 kb on - strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.616 kb on + strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.617 kb on - strandat 1413.730 kb on - strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.792 kb on + strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1413.793 kb on - strand, within LRK53_RS06155at 1414.181 kb on + strand, within LRK53_RS06160at 1414.181 kb on + strand, within LRK53_RS06160at 1414.182 kb on - strand, within LRK53_RS06160at 1414.586 kb on + strandat 1414.586 kb on + strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.587 kb on - strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.589 kb on + strandat 1414.658 kb on + strandat 1414.659 kb on - strandat 1414.659 kb on - strandat 1414.659 kb on - strandat 1414.663 kb on + strandat 1414.823 kb on + strandat 1414.823 kb on + strandat 1414.824 kb on - strandat 1414.824 kb on - strandat 1414.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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1,412,723 + -2.0
1,412,728 - -1.0
1,412,754 + -1.0
1,412,755 + -0.0
1,412,755 + +1.6
1,412,755 + +2.0
1,412,755 + -1.6
1,412,755 + -1.0
1,412,755 + -0.6
1,412,756 - -1.8
1,412,756 - +1.6
1,412,756 - -0.7
1,412,756 - +0.4
1,412,876 + LRK53_RS06150 0.16 -2.2
1,412,876 + LRK53_RS06150 0.16 +1.0
1,412,876 + LRK53_RS06150 0.16 +0.4
1,412,877 - LRK53_RS06150 0.16 -0.8
1,412,905 - LRK53_RS06150 0.19 -0.3
1,412,996 + LRK53_RS06150 0.30 -1.0
1,412,997 - LRK53_RS06150 0.30 -0.5
1,413,042 + LRK53_RS06150 0.36 -2.7
1,413,042 + LRK53_RS06150 0.36 +1.0
1,413,042 + LRK53_RS06150 0.36 -0.5
1,413,042 + LRK53_RS06150 0.36 -0.9
1,413,042 + LRK53_RS06150 0.36 -1.9
1,413,042 + LRK53_RS06150 0.36 -0.0
1,413,042 + LRK53_RS06150 0.36 -1.0
1,413,042 + LRK53_RS06150 0.36 -1.3
1,413,042 + LRK53_RS06150 0.36 -0.6
1,413,043 - LRK53_RS06150 0.36 +0.5
1,413,043 - LRK53_RS06150 0.36 -0.6
1,413,043 - LRK53_RS06150 0.36 -0.0
1,413,043 - LRK53_RS06150 0.36 -0.0
1,413,043 - LRK53_RS06150 0.36 -0.6
1,413,043 - LRK53_RS06150 0.36 -0.9
1,413,043 - LRK53_RS06150 0.36 -1.0
1,413,043 - LRK53_RS06150 0.36 -0.0
1,413,043 - LRK53_RS06150 0.36 -1.2
1,413,043 - LRK53_RS06150 0.36 -0.6
1,413,043 - LRK53_RS06150 0.36 +1.0
1,413,054 + LRK53_RS06150 0.37 +1.0
1,413,054 + LRK53_RS06150 0.37 +1.0
1,413,054 + LRK53_RS06150 0.37 -1.6
1,413,054 + LRK53_RS06150 0.37 -0.0
1,413,054 + LRK53_RS06150 0.37 -0.7
1,413,054 + LRK53_RS06150 0.37 -0.6
1,413,054 + LRK53_RS06150 0.37 -0.8
1,413,054 + LRK53_RS06150 0.37 -1.6
1,413,055 - LRK53_RS06150 0.37 -1.0
1,413,055 - LRK53_RS06150 0.37 -0.7
1,413,055 - LRK53_RS06150 0.37 -0.0
1,413,138 + LRK53_RS06150 0.47 -1.3
1,413,138 + LRK53_RS06150 0.47 -1.0
1,413,138 + LRK53_RS06150 0.47 -1.3
1,413,138 + LRK53_RS06150 0.47 -1.0
1,413,139 - LRK53_RS06150 0.47 +0.2
1,413,139 - LRK53_RS06150 0.47 -0.4
1,413,139 - LRK53_RS06150 0.47 -1.0
1,413,139 - LRK53_RS06150 0.47 -1.5
1,413,174 + LRK53_RS06150 0.51 -0.6
1,413,174 + LRK53_RS06150 0.51 -1.2
1,413,174 + LRK53_RS06150 0.51 -0.0
1,413,174 + LRK53_RS06150 0.51 +1.0
1,413,174 + LRK53_RS06150 0.51 -1.3
1,413,174 + LRK53_RS06150 0.51 -0.6
1,413,174 + LRK53_RS06150 0.51 -0.7
1,413,174 + LRK53_RS06150 0.51 +1.0
1,413,175 - LRK53_RS06150 0.52 +2.6
1,413,175 - LRK53_RS06150 0.52 -0.0
1,413,175 - LRK53_RS06150 0.52 -1.2
1,413,332 + LRK53_RS06150 0.70 +0.3
1,413,335 + LRK53_RS06150 0.71 -1.0
1,413,335 + LRK53_RS06150 0.71 -0.6
1,413,335 + LRK53_RS06150 0.71 -1.3
1,413,335 + LRK53_RS06150 0.71 +0.4
1,413,335 + LRK53_RS06150 0.71 -1.3
1,413,335 + LRK53_RS06150 0.71 -0.2
1,413,335 + LRK53_RS06150 0.71 -0.0
1,413,335 + LRK53_RS06150 0.71 -0.5
1,413,335 + LRK53_RS06150 0.71 -0.6
1,413,335 + LRK53_RS06150 0.71 -0.3
1,413,335 + LRK53_RS06150 0.71 +0.4
1,413,335 + LRK53_RS06150 0.71 -1.5
1,413,335 + LRK53_RS06150 0.71 -0.8
1,413,335 + LRK53_RS06150 0.71 +2.6
1,413,335 + LRK53_RS06150 0.71 -1.8
1,413,335 + LRK53_RS06150 0.71 -0.0
1,413,336 - LRK53_RS06150 0.71 -0.6
1,413,336 - LRK53_RS06150 0.71 -1.3
1,413,336 - LRK53_RS06150 0.71 -0.3
1,413,336 - LRK53_RS06150 0.71 +2.0
1,413,336 - LRK53_RS06150 0.71 +0.4
1,413,336 - LRK53_RS06150 0.71 +0.6
1,413,336 - LRK53_RS06150 0.71 -0.0
1,413,336 - LRK53_RS06150 0.71 -0.6
1,413,336 - LRK53_RS06150 0.71 -0.2
1,413,336 - LRK53_RS06150 0.71 +0.3
1,413,357 + LRK53_RS06150 0.73 -0.8
1,413,357 + LRK53_RS06150 0.73 -1.0
1,413,358 - LRK53_RS06150 0.73 -0.0
1,413,358 - LRK53_RS06150 0.73 -1.6
1,413,358 - LRK53_RS06150 0.73 -0.6
1,413,402 + LRK53_RS06150 0.79 -1.3
1,413,402 + LRK53_RS06150 0.79 +1.0
1,413,402 + LRK53_RS06150 0.79 +1.0
1,413,402 + LRK53_RS06150 0.79 +1.0
1,413,402 + LRK53_RS06150 0.79 -0.2
1,413,402 + LRK53_RS06150 0.79 -1.3
1,413,403 - LRK53_RS06150 0.79 -1.0
1,413,403 - LRK53_RS06150 0.79 -0.8
1,413,403 - LRK53_RS06150 0.79 +0.4
1,413,403 - LRK53_RS06150 0.79 +0.4
1,413,403 - LRK53_RS06150 0.79 -0.9
1,413,458 + LRK53_RS06150 0.85 +1.6
1,413,459 - LRK53_RS06150 0.85 +1.3
1,413,459 - LRK53_RS06150 0.85 -1.6
1,413,459 - LRK53_RS06150 0.85 +1.0
1,413,514 + -0.3
1,413,514 + -1.0
1,413,514 + +0.8
1,413,515 - +0.2
1,413,548 + +0.4
1,413,548 + -0.6
1,413,549 - -2.0
1,413,549 - +0.4
1,413,616 + -0.6
1,413,616 + +1.0
1,413,616 + -0.3
1,413,616 + -0.0
1,413,616 + +2.6
1,413,616 + +0.4
1,413,616 + -2.7
1,413,616 + +1.0
1,413,616 + -0.0
1,413,616 + -2.7
1,413,616 + +1.6
1,413,616 + -1.5
1,413,616 + +2.0
1,413,616 + +0.4
1,413,616 + +2.0
1,413,617 - +1.6
1,413,617 - -0.7
1,413,617 - -0.0
1,413,617 - -0.8
1,413,617 - +0.5
1,413,617 - -1.6
1,413,617 - -0.6
1,413,617 - +0.4
1,413,730 - LRK53_RS06155 0.23 +0.6
1,413,792 + LRK53_RS06155 0.40 +0.4
1,413,792 + LRK53_RS06155 0.40 -1.5
1,413,792 + LRK53_RS06155 0.40 -0.6
1,413,792 + LRK53_RS06155 0.40 -0.6
1,413,792 + LRK53_RS06155 0.40 -1.7
1,413,792 + LRK53_RS06155 0.40 -1.0
1,413,793 - LRK53_RS06155 0.40 -1.0
1,413,793 - LRK53_RS06155 0.40 -2.7
1,413,793 - LRK53_RS06155 0.40 +1.0
1,413,793 - LRK53_RS06155 0.40 -1.0
1,413,793 - LRK53_RS06155 0.40 -1.8
1,413,793 - LRK53_RS06155 0.40 -0.6
1,413,793 - LRK53_RS06155 0.40 +1.0
1,413,793 - LRK53_RS06155 0.40 -0.7
1,413,793 - LRK53_RS06155 0.40 -2.3
1,413,793 - LRK53_RS06155 0.40 -0.6
1,413,793 - LRK53_RS06155 0.40 +1.0
1,413,793 - LRK53_RS06155 0.40 -0.0
1,413,793 - LRK53_RS06155 0.40 -1.8
1,414,181 + LRK53_RS06160 0.28 -0.0
1,414,181 + LRK53_RS06160 0.28 -0.0
1,414,182 - LRK53_RS06160 0.28 -0.6
1,414,586 + -1.3
1,414,586 + -0.0
1,414,587 - -0.0
1,414,587 - -0.3
1,414,587 - -0.6
1,414,587 - +1.0
1,414,587 - -1.3
1,414,589 + -1.0
1,414,589 + -0.0
1,414,589 + -1.5
1,414,589 + -1.6
1,414,589 + -2.2
1,414,658 + +1.0
1,414,659 - +1.6
1,414,659 - +0.4
1,414,659 - -0.6
1,414,663 + +0.4
1,414,823 + -0.6
1,414,823 + -0.0
1,414,824 - +2.0
1,414,824 - -0.8
1,414,824 - -1.2

Or see this region's nucleotide sequence