Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06030 and LRK53_RS06035 overlap by 8 nucleotides LRK53_RS06035 and LRK53_RS06040 are separated by 105 nucleotides LRK53_RS06040 and LRK53_RS06045 are separated by 70 nucleotides LRK53_RS06045 and LRK53_RS06050 are separated by 169 nucleotides LRK53_RS06050 and LRK53_RS06055 are separated by 267 nucleotides
LRK53_RS06030: LRK53_RS06030 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 1,389,569 to 1,390,297
_RS06030
LRK53_RS06035: LRK53_RS06035 - helix-turn-helix domain-containing protein, at 1,390,290 to 1,390,760
_RS06035
LRK53_RS06040: LRK53_RS06040 - HigA family addiction module antitoxin, at 1,390,866 to 1,391,105
_RS06040
LRK53_RS06045: LRK53_RS06045 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,391,176 to 1,391,310
_RS06045
LRK53_RS06050: LRK53_RS06050 - nucleotidyltransferase domain-containing protein, at 1,391,480 to 1,391,866
_RS06050
LRK53_RS06055: LRK53_RS06055 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 1,392,134 to 1,392,748
_RS06055
Position (kb) 1391
1392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.215 kb on + strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.216 kb on - strand, within LRK53_RS06030 at 1390.509 kb on + strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.541 kb on - strand, within LRK53_RS06035 at 1390.721 kb on + strand at 1390.721 kb on + strand at 1390.723 kb on + strand at 1390.724 kb on - strand at 1390.724 kb on - strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.751 kb on + strand at 1390.752 kb on - strand at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.956 kb on + strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.957 kb on - strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.978 kb on + strand, within LRK53_RS06040 at 1390.979 kb on - strand, within LRK53_RS06040 at 1390.979 kb on - strand, within LRK53_RS06040 at 1391.177 kb on + strand at 1391.177 kb on + strand at 1391.177 kb on + strand at 1391.178 kb on - strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.183 kb on + strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.184 kb on - strand at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.204 kb on + strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.205 kb on - strand, within LRK53_RS06045 at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.347 kb on + strand at 1391.348 kb on - strand at 1391.348 kb on - strand at 1391.348 kb on - strand at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.526 kb on + strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.527 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.551 kb on - strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.618 kb on + strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.619 kb on - strand, within LRK53_RS06050 at 1391.642 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.647 kb on + strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.648 kb on - strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.744 kb on + strand, within LRK53_RS06050 at 1391.745 kb on - strand, within LRK53_RS06050 at 1391.826 kb on + strand, within LRK53_RS06050 at 1391.827 kb on - strand, within LRK53_RS06050 at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.888 kb on + strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.889 kb on - strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.890 kb on + strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1391.891 kb on - strand at 1392.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 1,390,215 + LRK53_RS06030 0.89 -1.0 1,390,215 + LRK53_RS06030 0.89 +0.4 1,390,215 + LRK53_RS06030 0.89 -1.3 1,390,215 + LRK53_RS06030 0.89 +0.6 1,390,215 + LRK53_RS06030 0.89 +2.0 1,390,215 + LRK53_RS06030 0.89 -1.0 1,390,216 - LRK53_RS06030 0.89 -0.6 1,390,216 - LRK53_RS06030 0.89 -0.0 1,390,216 - LRK53_RS06030 0.89 -1.2 1,390,216 - LRK53_RS06030 0.89 -1.1 1,390,509 + LRK53_RS06035 0.46 -1.0 1,390,541 - LRK53_RS06035 0.53 +1.4 1,390,541 - LRK53_RS06035 0.53 +1.0 1,390,541 - LRK53_RS06035 0.53 +1.0 1,390,541 - LRK53_RS06035 0.53 -0.3 1,390,721 + -0.3 1,390,721 + -0.6 1,390,723 + -0.6 1,390,724 - -1.3 1,390,724 - -0.0 1,390,751 + -0.0 1,390,751 + -0.0 1,390,751 + -0.4 1,390,751 + -0.3 1,390,751 + +0.4 1,390,751 + -1.3 1,390,752 - -0.3 1,390,956 + LRK53_RS06040 0.38 -0.5 1,390,956 + LRK53_RS06040 0.38 -0.4 1,390,956 + LRK53_RS06040 0.38 -0.6 1,390,956 + LRK53_RS06040 0.38 -0.1 1,390,956 + LRK53_RS06040 0.38 -1.6 1,390,956 + LRK53_RS06040 0.38 -0.3 1,390,956 + LRK53_RS06040 0.38 -0.4 1,390,956 + LRK53_RS06040 0.38 -0.0 1,390,956 + LRK53_RS06040 0.38 +1.3 1,390,956 + LRK53_RS06040 0.38 -1.8 1,390,956 + LRK53_RS06040 0.38 +2.0 1,390,956 + LRK53_RS06040 0.38 -0.3 1,390,956 + LRK53_RS06040 0.38 +0.4 1,390,956 + LRK53_RS06040 0.38 -0.4 1,390,956 + LRK53_RS06040 0.38 -0.3 1,390,956 + LRK53_RS06040 0.38 +1.0 1,390,956 + LRK53_RS06040 0.38 -0.9 1,390,956 + LRK53_RS06040 0.38 -0.0 1,390,956 + LRK53_RS06040 0.38 +2.0 1,390,956 + LRK53_RS06040 0.38 -0.1 1,390,956 + LRK53_RS06040 0.38 +0.3 1,390,956 + LRK53_RS06040 0.38 -2.2 1,390,956 + LRK53_RS06040 0.38 +1.0 1,390,956 + LRK53_RS06040 0.38 -1.3 1,390,957 - LRK53_RS06040 0.38 -0.0 1,390,957 - LRK53_RS06040 0.38 -0.5 1,390,957 - LRK53_RS06040 0.38 -0.0 1,390,957 - LRK53_RS06040 0.38 +0.4 1,390,957 - LRK53_RS06040 0.38 +2.0 1,390,957 - LRK53_RS06040 0.38 +0.2 1,390,957 - LRK53_RS06040 0.38 +1.0 1,390,957 - LRK53_RS06040 0.38 +0.2 1,390,957 - LRK53_RS06040 0.38 -1.3 1,390,957 - LRK53_RS06040 0.38 -0.2 1,390,957 - LRK53_RS06040 0.38 +0.4 1,390,957 - LRK53_RS06040 0.38 -0.3 1,390,957 - LRK53_RS06040 0.38 +0.0 1,390,957 - LRK53_RS06040 0.38 -0.5 1,390,957 - LRK53_RS06040 0.38 +1.0 1,390,957 - LRK53_RS06040 0.38 +1.0 1,390,957 - LRK53_RS06040 0.38 -1.7 1,390,957 - LRK53_RS06040 0.38 -1.0 1,390,978 + LRK53_RS06040 0.47 +0.1 1,390,978 + LRK53_RS06040 0.47 +0.1 1,390,978 + LRK53_RS06040 0.47 -1.0 1,390,979 - LRK53_RS06040 0.47 -0.0 1,390,979 - LRK53_RS06040 0.47 -1.2 1,391,177 + +1.0 1,391,177 + -1.6 1,391,177 + -0.6 1,391,178 - -1.6 1,391,183 + +1.0 1,391,183 + -2.0 1,391,183 + -1.2 1,391,183 + -0.2 1,391,183 + -0.7 1,391,183 + -1.0 1,391,183 + +0.4 1,391,183 + +0.6 1,391,183 + +1.0 1,391,183 + +1.4 1,391,183 + -2.8 1,391,184 - -1.3 1,391,184 - -1.6 1,391,184 - +0.0 1,391,184 - -1.0 1,391,204 + LRK53_RS06045 0.21 -1.4 1,391,204 + LRK53_RS06045 0.21 -0.3 1,391,204 + LRK53_RS06045 0.21 -1.3 1,391,204 + LRK53_RS06045 0.21 -1.0 1,391,204 + LRK53_RS06045 0.21 -1.0 1,391,204 + LRK53_RS06045 0.21 +1.0 1,391,204 + LRK53_RS06045 0.21 -0.6 1,391,205 - LRK53_RS06045 0.21 +0.4 1,391,205 - LRK53_RS06045 0.21 -0.6 1,391,205 - LRK53_RS06045 0.21 +0.0 1,391,205 - LRK53_RS06045 0.21 +0.8 1,391,205 - LRK53_RS06045 0.21 -1.8 1,391,205 - LRK53_RS06045 0.21 -1.6 1,391,347 + +0.0 1,391,347 + +0.0 1,391,347 + +0.0 1,391,347 + +1.6 1,391,348 - -1.8 1,391,348 - -1.6 1,391,348 - -1.4 1,391,526 + LRK53_RS06050 0.12 -0.2 1,391,526 + LRK53_RS06050 0.12 -1.7 1,391,526 + LRK53_RS06050 0.12 +0.3 1,391,526 + LRK53_RS06050 0.12 -1.3 1,391,526 + LRK53_RS06050 0.12 -1.0 1,391,527 - LRK53_RS06050 0.12 -0.6 1,391,527 - LRK53_RS06050 0.12 +0.6 1,391,527 - LRK53_RS06050 0.12 -1.3 1,391,527 - LRK53_RS06050 0.12 -1.6 1,391,527 - LRK53_RS06050 0.12 +1.0 1,391,527 - LRK53_RS06050 0.12 +0.4 1,391,527 - LRK53_RS06050 0.12 -1.6 1,391,527 - LRK53_RS06050 0.12 +0.0 1,391,527 - LRK53_RS06050 0.12 -1.2 1,391,551 - LRK53_RS06050 0.18 +0.6 1,391,551 - LRK53_RS06050 0.18 -0.2 1,391,551 - LRK53_RS06050 0.18 +0.6 1,391,551 - LRK53_RS06050 0.18 -0.6 1,391,551 - LRK53_RS06050 0.18 +0.6 1,391,551 - LRK53_RS06050 0.18 -0.3 1,391,551 - LRK53_RS06050 0.18 +1.0 1,391,618 + LRK53_RS06050 0.36 -1.4 1,391,618 + LRK53_RS06050 0.36 +1.0 1,391,618 + LRK53_RS06050 0.36 +0.0 1,391,618 + LRK53_RS06050 0.36 -1.0 1,391,618 + LRK53_RS06050 0.36 -1.0 1,391,618 + LRK53_RS06050 0.36 -0.3 1,391,618 + LRK53_RS06050 0.36 -1.6 1,391,618 + LRK53_RS06050 0.36 +0.0 1,391,618 + LRK53_RS06050 0.36 -1.6 1,391,618 + LRK53_RS06050 0.36 -0.6 1,391,618 + LRK53_RS06050 0.36 +0.4 1,391,618 + LRK53_RS06050 0.36 -1.7 1,391,619 - LRK53_RS06050 0.36 -1.0 1,391,619 - LRK53_RS06050 0.36 +0.3 1,391,619 - LRK53_RS06050 0.36 -1.1 1,391,619 - LRK53_RS06050 0.36 -1.1 1,391,619 - LRK53_RS06050 0.36 +0.0 1,391,642 + LRK53_RS06050 0.42 -1.3 1,391,647 + LRK53_RS06050 0.43 +0.0 1,391,647 + LRK53_RS06050 0.43 -1.0 1,391,647 + LRK53_RS06050 0.43 -1.1 1,391,647 + LRK53_RS06050 0.43 -0.8 1,391,647 + LRK53_RS06050 0.43 +1.0 1,391,647 + LRK53_RS06050 0.43 +0.2 1,391,647 + LRK53_RS06050 0.43 -0.8 1,391,647 + LRK53_RS06050 0.43 -1.7 1,391,647 + LRK53_RS06050 0.43 -2.3 1,391,648 - LRK53_RS06050 0.43 -1.0 1,391,648 - LRK53_RS06050 0.43 -1.1 1,391,648 - LRK53_RS06050 0.43 +0.0 1,391,648 - LRK53_RS06050 0.43 -1.6 1,391,648 - LRK53_RS06050 0.43 -1.3 1,391,648 - LRK53_RS06050 0.43 -0.2 1,391,648 - LRK53_RS06050 0.43 -0.6 1,391,744 + LRK53_RS06050 0.68 -1.0 1,391,744 + LRK53_RS06050 0.68 -0.1 1,391,744 + LRK53_RS06050 0.68 -1.2 1,391,745 - LRK53_RS06050 0.68 -0.6 1,391,826 + LRK53_RS06050 0.89 -1.0 1,391,827 - LRK53_RS06050 0.90 -1.4 1,391,888 + -0.6 1,391,888 + -2.4 1,391,888 + +1.0 1,391,888 + -1.3 1,391,888 + -1.6 1,391,888 + -1.0 1,391,888 + -0.1 1,391,888 + -0.7 1,391,888 + -1.5 1,391,888 + +1.0 1,391,888 + -1.6 1,391,888 + +0.0 1,391,888 + +0.3 1,391,888 + -1.0 1,391,888 + -0.8 1,391,889 - -1.0 1,391,889 - +1.3 1,391,889 - -1.2 1,391,889 - -0.1 1,391,889 - -0.8 1,391,889 - -0.7 1,391,889 - -0.8 1,391,889 - -1.3 1,391,889 - -0.6 1,391,889 - -0.6 1,391,889 - +0.4 1,391,889 - -0.6 1,391,889 - +1.0 1,391,889 - -1.5 1,391,889 - +0.0 1,391,889 - +1.3 1,391,889 - +0.3 1,391,889 - +1.0 1,391,889 - +0.0 1,391,889 - -1.1 1,391,889 - +0.0 1,391,889 - -0.9 1,391,890 + -1.0 1,391,890 + +1.0 1,391,890 + +1.0 1,391,890 + +0.0 1,391,890 + +1.6 1,391,890 + -1.5 1,391,890 + -0.5 1,391,890 + +0.3 1,391,890 + -0.9 1,391,890 + +0.0 1,391,890 + -0.5 1,391,890 + -0.8 1,391,890 + -1.0 1,391,890 + +0.4 1,391,891 - -2.7 1,391,891 - -0.4 1,391,891 - +1.0 1,391,891 - -0.3 1,391,891 - +0.7 1,391,891 - -0.4 1,391,891 - -0.3 1,391,891 - -0.3 1,392,168 + -1.3
Or see this region's nucleotide sequence