Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05760

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05755 and LRK53_RS05760 overlap by 4 nucleotidesLRK53_RS05760 and LRK53_RS05765 are separated by 22 nucleotidesLRK53_RS05765 and LRK53_RS05770 are separated by 179 nucleotides LRK53_RS05755: LRK53_RS05755 - chemotaxis protein CheB, at 1,338,520 to 1,340,175 _RS05755 LRK53_RS05760: LRK53_RS05760 - chemotaxis protein CheW, at 1,340,172 to 1,340,681 _RS05760 LRK53_RS05765: LRK53_RS05765 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,340,704 to 1,341,438 _RS05765 LRK53_RS05770: LRK53_RS05770 - hypothetical protein, at 1,341,618 to 1,341,932 _RS05770 Position (kb) 1340 1341Strain fitness (log2 ratio) -2 -1 0 1 2at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.538 kb on + strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.539 kb on - strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.573 kb on + strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.574 kb on - strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.829 kb on + strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1339.830 kb on - strand, within LRK53_RS05755at 1340.416 kb on + strand, within LRK53_RS05760at 1341.223 kb on + strand, within LRK53_RS05765at 1341.224 kb on - strand, within LRK53_RS05765at 1341.224 kb on - strand, within LRK53_RS05765at 1341.290 kb on + strand, within LRK53_RS05765at 1341.291 kb on - strand, within LRK53_RS05765at 1341.472 kb on + strandat 1341.472 kb on + strandat 1341.555 kb on + strandat 1341.555 kb on + strandat 1341.555 kb on + strandat 1341.555 kb on + strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strandat 1341.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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1,339,538 + LRK53_RS05755 0.61 +2.6
1,339,538 + LRK53_RS05755 0.61 -0.4
1,339,538 + LRK53_RS05755 0.61 -2.0
1,339,538 + LRK53_RS05755 0.61 -0.3
1,339,538 + LRK53_RS05755 0.61 -1.6
1,339,538 + LRK53_RS05755 0.61 -0.0
1,339,538 + LRK53_RS05755 0.61 +0.7
1,339,538 + LRK53_RS05755 0.61 -1.5
1,339,539 - LRK53_RS05755 0.62 +2.0
1,339,539 - LRK53_RS05755 0.62 -0.7
1,339,539 - LRK53_RS05755 0.62 -1.0
1,339,539 - LRK53_RS05755 0.62 +0.4
1,339,539 - LRK53_RS05755 0.62 -0.4
1,339,539 - LRK53_RS05755 0.62 -0.6
1,339,539 - LRK53_RS05755 0.62 -1.6
1,339,573 + LRK53_RS05755 0.64 -0.7
1,339,573 + LRK53_RS05755 0.64 -0.3
1,339,573 + LRK53_RS05755 0.64 -0.6
1,339,573 + LRK53_RS05755 0.64 -0.6
1,339,573 + LRK53_RS05755 0.64 -0.3
1,339,573 + LRK53_RS05755 0.64 -1.4
1,339,573 + LRK53_RS05755 0.64 +1.0
1,339,573 + LRK53_RS05755 0.64 -1.8
1,339,573 + LRK53_RS05755 0.64 -0.0
1,339,573 + LRK53_RS05755 0.64 -0.0
1,339,573 + LRK53_RS05755 0.64 -0.0
1,339,573 + LRK53_RS05755 0.64 -1.0
1,339,573 + LRK53_RS05755 0.64 +1.3
1,339,573 + LRK53_RS05755 0.64 -2.0
1,339,574 - LRK53_RS05755 0.64 -1.8
1,339,574 - LRK53_RS05755 0.64 -1.0
1,339,574 - LRK53_RS05755 0.64 -1.0
1,339,574 - LRK53_RS05755 0.64 -0.6
1,339,574 - LRK53_RS05755 0.64 -0.8
1,339,574 - LRK53_RS05755 0.64 -2.0
1,339,574 - LRK53_RS05755 0.64 -0.6
1,339,829 + LRK53_RS05755 0.79 -1.1
1,339,829 + LRK53_RS05755 0.79 -0.9
1,339,829 + LRK53_RS05755 0.79 -0.0
1,339,829 + LRK53_RS05755 0.79 -0.0
1,339,829 + LRK53_RS05755 0.79 +1.0
1,339,829 + LRK53_RS05755 0.79 -1.1
1,339,829 + LRK53_RS05755 0.79 +1.0
1,339,829 + LRK53_RS05755 0.79 -0.1
1,339,829 + LRK53_RS05755 0.79 +0.3
1,339,830 - LRK53_RS05755 0.79 -0.0
1,339,830 - LRK53_RS05755 0.79 -1.5
1,339,830 - LRK53_RS05755 0.79 +1.6
1,339,830 - LRK53_RS05755 0.79 +0.4
1,339,830 - LRK53_RS05755 0.79 -0.0
1,339,830 - LRK53_RS05755 0.79 -1.8
1,339,830 - LRK53_RS05755 0.79 -0.0
1,339,830 - LRK53_RS05755 0.79 +0.4
1,340,416 + LRK53_RS05760 0.48 -1.9
1,341,223 + LRK53_RS05765 0.71 -0.0
1,341,224 - LRK53_RS05765 0.71 +0.4
1,341,224 - LRK53_RS05765 0.71 +1.0
1,341,290 + LRK53_RS05765 0.80 -0.6
1,341,291 - LRK53_RS05765 0.80 +1.3
1,341,472 + +1.0
1,341,472 + +0.3
1,341,555 + -1.0
1,341,555 + -0.0
1,341,555 + +2.0
1,341,555 + -0.0
1,341,556 - +1.0
1,341,556 - -2.2
1,341,556 - -1.0
1,341,556 - -0.5
1,341,556 - -1.0
1,341,556 - -1.0

Or see this region's nucleotide sequence