Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03780

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03770 and LRK53_RS03775 are separated by 55 nucleotidesLRK53_RS03775 and LRK53_RS03780 are separated by 2 nucleotidesLRK53_RS03780 and LRK53_RS03785 are separated by 69 nucleotidesLRK53_RS03785 and LRK53_RS03790 are separated by 98 nucleotides LRK53_RS03770: LRK53_RS03770 - hypothetical protein, at 887,732 to 888,133 _RS03770 LRK53_RS03775: LRK53_RS03775 - DUF938 domain-containing protein, at 888,189 to 888,785 _RS03775 LRK53_RS03780: LRK53_RS03780 - DUF4325 domain-containing protein, at 888,788 to 889,849 _RS03780 LRK53_RS03785: LRK53_RS03785 - hypothetical protein, at 889,919 to 890,116 _RS03785 LRK53_RS03790: LRK53_RS03790 - NnrU family protein, at 890,215 to 890,793 _RS03790 Position (kb) 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 887.979 kb on + strand, within LRK53_RS03770at 887.979 kb on + strand, within LRK53_RS03770at 887.979 kb on + strand, within LRK53_RS03770at 887.979 kb on + strand, within LRK53_RS03770at 887.980 kb on - strand, within LRK53_RS03770at 887.980 kb on - strand, within LRK53_RS03770at 887.980 kb on - strand, within LRK53_RS03770at 887.980 kb on - strand, within LRK53_RS03770at 887.980 kb on - strand, within LRK53_RS03770at 888.000 kb on + strand, within LRK53_RS03770at 888.000 kb on + strand, within LRK53_RS03770at 888.000 kb on + strand, within LRK53_RS03770at 888.000 kb on + strand, within LRK53_RS03770at 888.000 kb on + strand, within LRK53_RS03770at 888.001 kb on - strand, within LRK53_RS03770at 888.001 kb on - strand, within LRK53_RS03770at 888.001 kb on - strand, within LRK53_RS03770at 888.001 kb on - strand, within LRK53_RS03770at 888.001 kb on - strand, within LRK53_RS03770at 888.081 kb on + strand, within LRK53_RS03770at 888.082 kb on - strand, within LRK53_RS03770at 888.144 kb on + strandat 888.144 kb on + strandat 888.144 kb on + strandat 888.145 kb on - strandat 888.145 kb on - strandat 888.391 kb on + strand, within LRK53_RS03775at 888.391 kb on + strand, within LRK53_RS03775at 888.391 kb on + strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.392 kb on - strand, within LRK53_RS03775at 888.769 kb on + strandat 888.769 kb on + strandat 888.770 kb on - strandat 888.770 kb on - strandat 888.854 kb on + strandat 888.854 kb on + strandat 888.854 kb on + strandat 888.854 kb on + strandat 888.854 kb on + strandat 889.089 kb on + strand, within LRK53_RS03780at 889.089 kb on + strand, within LRK53_RS03780at 889.089 kb on + strand, within LRK53_RS03780at 889.089 kb on + strand, within LRK53_RS03780at 889.089 kb on + strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.090 kb on - strand, within LRK53_RS03780at 889.110 kb on + strand, within LRK53_RS03780at 889.110 kb on + strand, within LRK53_RS03780at 889.110 kb on + strand, within LRK53_RS03780at 889.110 kb on + strand, within LRK53_RS03780at 889.110 kb on + strand, within LRK53_RS03780at 889.111 kb on - strand, within LRK53_RS03780at 889.111 kb on - strand, within LRK53_RS03780at 889.540 kb on + strand, within LRK53_RS03780at 889.540 kb on + strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.718 kb on + strand, within LRK53_RS03780at 889.719 kb on - strand, within LRK53_RS03780at 889.719 kb on - strand, within LRK53_RS03780at 889.860 kb on + strandat 889.860 kb on + strandat 889.861 kb on - strandat 889.861 kb on - strandat 889.861 kb on - strandat 889.865 kb on + strandat 889.865 kb on + strandat 889.865 kb on + strandat 889.866 kb on - strandat 889.866 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.909 kb on + strandat 889.991 kb on + strand, within LRK53_RS03785at 890.216 kb on + strandat 890.216 kb on + strandat 890.216 kb on + strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.829 kb on + strandat 890.829 kb on + strandat 890.829 kb on + strandat 890.829 kb on + strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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887,979 + LRK53_RS03770 0.61 -0.0
887,979 + LRK53_RS03770 0.61 -0.0
887,979 + LRK53_RS03770 0.61 +0.4
887,979 + LRK53_RS03770 0.61 -0.9
887,980 - LRK53_RS03770 0.62 -1.0
887,980 - LRK53_RS03770 0.62 -1.6
887,980 - LRK53_RS03770 0.62 -1.8
887,980 - LRK53_RS03770 0.62 -1.3
887,980 - LRK53_RS03770 0.62 +0.2
888,000 + LRK53_RS03770 0.67 +1.4
888,000 + LRK53_RS03770 0.67 -3.7
888,000 + LRK53_RS03770 0.67 -1.3
888,000 + LRK53_RS03770 0.67 -1.3
888,000 + LRK53_RS03770 0.67 -0.6
888,001 - LRK53_RS03770 0.67 -0.3
888,001 - LRK53_RS03770 0.67 -1.6
888,001 - LRK53_RS03770 0.67 +1.0
888,001 - LRK53_RS03770 0.67 -0.0
888,001 - LRK53_RS03770 0.67 -0.6
888,081 + LRK53_RS03770 0.87 -0.5
888,082 - LRK53_RS03770 0.87 -0.6
888,144 + +1.0
888,144 + +0.2
888,144 + -0.3
888,145 - -0.8
888,145 - -0.6
888,391 + LRK53_RS03775 0.34 +1.7
888,391 + LRK53_RS03775 0.34 +0.4
888,391 + LRK53_RS03775 0.34 -0.2
888,392 - LRK53_RS03775 0.34 -0.2
888,392 - LRK53_RS03775 0.34 -0.0
888,392 - LRK53_RS03775 0.34 -1.0
888,392 - LRK53_RS03775 0.34 +0.3
888,392 - LRK53_RS03775 0.34 +0.5
888,392 - LRK53_RS03775 0.34 -1.1
888,392 - LRK53_RS03775 0.34 -0.7
888,392 - LRK53_RS03775 0.34 -0.2
888,392 - LRK53_RS03775 0.34 -0.0
888,392 - LRK53_RS03775 0.34 -0.7
888,769 + +1.0
888,769 + -1.0
888,770 - -0.6
888,770 - -0.0
888,854 + -1.0
888,854 + +2.6
888,854 + -0.0
888,854 + -0.9
888,854 + +1.0
889,089 + LRK53_RS03780 0.28 +0.4
889,089 + LRK53_RS03780 0.28 -1.3
889,089 + LRK53_RS03780 0.28 -0.6
889,089 + LRK53_RS03780 0.28 +1.0
889,089 + LRK53_RS03780 0.28 -1.6
889,090 - LRK53_RS03780 0.28 +1.0
889,090 - LRK53_RS03780 0.28 -2.0
889,090 - LRK53_RS03780 0.28 -0.8
889,090 - LRK53_RS03780 0.28 -1.0
889,090 - LRK53_RS03780 0.28 -0.1
889,090 - LRK53_RS03780 0.28 -0.0
889,090 - LRK53_RS03780 0.28 +0.6
889,090 - LRK53_RS03780 0.28 -1.1
889,110 + LRK53_RS03780 0.30 -0.6
889,110 + LRK53_RS03780 0.30 -1.0
889,110 + LRK53_RS03780 0.30 -1.7
889,110 + LRK53_RS03780 0.30 -1.2
889,110 + LRK53_RS03780 0.30 +0.6
889,111 - LRK53_RS03780 0.30 +0.6
889,111 - LRK53_RS03780 0.30 -1.2
889,540 + LRK53_RS03780 0.71 -2.3
889,540 + LRK53_RS03780 0.71 +0.5
889,541 - LRK53_RS03780 0.71 +1.0
889,541 - LRK53_RS03780 0.71 -1.0
889,541 - LRK53_RS03780 0.71 -0.0
889,541 - LRK53_RS03780 0.71 +1.0
889,541 - LRK53_RS03780 0.71 -0.0
889,662 + LRK53_RS03780 0.82 +1.3
889,662 + LRK53_RS03780 0.82 -1.2
889,662 + LRK53_RS03780 0.82 +1.0
889,663 - LRK53_RS03780 0.82 -0.0
889,663 - LRK53_RS03780 0.82 -0.0
889,663 - LRK53_RS03780 0.82 -0.0
889,663 - LRK53_RS03780 0.82 -1.3
889,663 - LRK53_RS03780 0.82 -0.0
889,663 - LRK53_RS03780 0.82 -1.3
889,663 - LRK53_RS03780 0.82 -2.0
889,663 - LRK53_RS03780 0.82 -0.6
889,663 - LRK53_RS03780 0.82 +1.0
889,663 - LRK53_RS03780 0.82 -1.4
889,663 - LRK53_RS03780 0.82 -0.9
889,695 + LRK53_RS03780 0.85 -0.6
889,695 + LRK53_RS03780 0.85 +1.0
889,695 + LRK53_RS03780 0.85 -0.7
889,695 + LRK53_RS03780 0.85 +1.0
889,696 - LRK53_RS03780 0.85 -0.3
889,696 - LRK53_RS03780 0.85 -0.8
889,696 - LRK53_RS03780 0.85 -1.0
889,696 - LRK53_RS03780 0.85 -0.0
889,696 - LRK53_RS03780 0.85 -1.1
889,696 - LRK53_RS03780 0.85 -0.6
889,718 + LRK53_RS03780 0.88 -0.8
889,719 - LRK53_RS03780 0.88 -0.6
889,719 - LRK53_RS03780 0.88 -0.5
889,860 + +2.0
889,860 + -1.5
889,861 - +0.0
889,861 - +0.3
889,861 - -0.7
889,865 + +0.8
889,865 + +0.3
889,865 + -1.0
889,866 - +2.0
889,866 - -0.7
889,888 - -1.0
889,888 - -0.0
889,909 + +1.0
889,991 + LRK53_RS03785 0.36 +0.7
890,216 + -0.1
890,216 + -0.8
890,216 + -1.0
890,217 - -0.8
890,217 - +1.0
890,217 - -2.0
890,217 - +0.1
890,330 + LRK53_RS03790 0.20 -0.3
890,330 + LRK53_RS03790 0.20 +1.4
890,330 + LRK53_RS03790 0.20 +0.6
890,330 + LRK53_RS03790 0.20 +0.4
890,331 - LRK53_RS03790 0.20 +1.0
890,331 - LRK53_RS03790 0.20 -0.5
890,331 - LRK53_RS03790 0.20 +1.0
890,331 - LRK53_RS03790 0.20 +0.4
890,331 - LRK53_RS03790 0.20 -1.0
890,331 - LRK53_RS03790 0.20 -0.5
890,519 + LRK53_RS03790 0.53 -2.3
890,519 + LRK53_RS03790 0.53 +0.3
890,519 + LRK53_RS03790 0.53 -0.0
890,519 + LRK53_RS03790 0.53 -1.0
890,519 + LRK53_RS03790 0.53 -0.9
890,519 + LRK53_RS03790 0.53 +0.2
890,519 + LRK53_RS03790 0.53 -0.3
890,519 + LRK53_RS03790 0.53 -0.7
890,520 - LRK53_RS03790 0.53 -0.6
890,520 - LRK53_RS03790 0.53 -0.3
890,520 - LRK53_RS03790 0.53 -1.5
890,520 - LRK53_RS03790 0.53 +0.3
890,520 - LRK53_RS03790 0.53 +1.3
890,520 - LRK53_RS03790 0.53 +1.0
890,520 - LRK53_RS03790 0.53 +1.0
890,520 - LRK53_RS03790 0.53 -1.0
890,594 + LRK53_RS03790 0.65 +0.6
890,594 + LRK53_RS03790 0.65 +0.2
890,594 + LRK53_RS03790 0.65 -0.0
890,594 + LRK53_RS03790 0.65 +0.1
890,594 + LRK53_RS03790 0.65 +2.0
890,594 + LRK53_RS03790 0.65 +0.1
890,595 - LRK53_RS03790 0.66 -0.2
890,595 - LRK53_RS03790 0.66 +0.4
890,595 - LRK53_RS03790 0.66 -0.0
890,595 - LRK53_RS03790 0.66 -0.2
890,595 - LRK53_RS03790 0.66 -1.8
890,595 - LRK53_RS03790 0.66 -0.0
890,595 - LRK53_RS03790 0.66 -1.0
890,595 - LRK53_RS03790 0.66 +0.2
890,595 - LRK53_RS03790 0.66 -0.0
890,595 - LRK53_RS03790 0.66 -0.5
890,595 - LRK53_RS03790 0.66 -0.4
890,672 + LRK53_RS03790 0.79 -0.7
890,672 + LRK53_RS03790 0.79 -0.3
890,672 + LRK53_RS03790 0.79 -0.0
890,673 - LRK53_RS03790 0.79 -1.6
890,673 - LRK53_RS03790 0.79 -0.0
890,673 - LRK53_RS03790 0.79 -2.4
890,689 + LRK53_RS03790 0.82 +1.0
890,689 + LRK53_RS03790 0.82 -1.2
890,689 + LRK53_RS03790 0.82 +1.6
890,690 - LRK53_RS03790 0.82 -0.0
890,690 - LRK53_RS03790 0.82 -0.3
890,690 - LRK53_RS03790 0.82 -0.6
890,829 + +1.4
890,829 + -0.6
890,829 + -0.6
890,829 + -0.2
890,830 - -3.3
890,830 - -1.3
890,830 - -1.6
890,830 - -1.0

Or see this region's nucleotide sequence