Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03630 and LRK53_RS03635 are separated by 295 nucleotides LRK53_RS03635 and LRK53_RS03640 are separated by 11 nucleotides LRK53_RS03640 and LRK53_RS03645 are separated by 295 nucleotides
LRK53_RS03630: LRK53_RS03630 - fatty acid desaturase, at 855,550 to 856,743
_RS03630
LRK53_RS03635: LRK53_RS03635 - 50S ribosomal protein L33, at 857,039 to 857,206
_RS03635
LRK53_RS03640: LRK53_RS03640 - 50S ribosomal protein L28, at 857,218 to 857,454
_RS03640
LRK53_RS03645: LRK53_RS03645 - protein-export chaperone SecB, at 857,750 to 858,253
_RS03645
Position (kb) 857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.219 kb on - strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.868 kb on + strand at 856.868 kb on + strand at 856.869 kb on - strand at 856.907 kb on - strand at 856.981 kb on + strand at 856.981 kb on + strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 857.092 kb on - strand, within LRK53_RS03635 at 857.146 kb on - strand, within LRK53_RS03635 at 857.146 kb on - strand, within LRK53_RS03635 at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.720 kb on + strand at 857.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 856,219 - LRK53_RS03630 0.56 +1.0 856,402 + LRK53_RS03630 0.71 -0.3 856,402 + LRK53_RS03630 0.71 -0.6 856,402 + LRK53_RS03630 0.71 +2.0 856,402 + LRK53_RS03630 0.71 +1.0 856,402 + LRK53_RS03630 0.71 -0.0 856,403 - LRK53_RS03630 0.71 -1.0 856,403 - LRK53_RS03630 0.71 +1.0 856,403 - LRK53_RS03630 0.71 -2.5 856,403 - LRK53_RS03630 0.71 -0.6 856,403 - LRK53_RS03630 0.71 -1.0 856,403 - LRK53_RS03630 0.71 -1.3 856,403 - LRK53_RS03630 0.71 -1.8 856,403 - LRK53_RS03630 0.71 -2.7 856,403 - LRK53_RS03630 0.71 -1.3 856,403 - LRK53_RS03630 0.71 -0.5 856,405 + LRK53_RS03630 0.72 -0.4 856,405 + LRK53_RS03630 0.72 -1.3 856,405 + LRK53_RS03630 0.72 -1.5 856,405 + LRK53_RS03630 0.72 -1.3 856,405 + LRK53_RS03630 0.72 -0.3 856,405 + LRK53_RS03630 0.72 -2.9 856,405 + LRK53_RS03630 0.72 +0.3 856,406 - LRK53_RS03630 0.72 -1.8 856,406 - LRK53_RS03630 0.72 -0.0 856,406 - LRK53_RS03630 0.72 -1.7 856,406 - LRK53_RS03630 0.72 -1.3 856,724 - +1.0 856,724 - -1.4 856,724 - -1.3 856,724 - -1.2 856,724 - -0.5 856,724 - +0.8 856,837 + +0.4 856,837 + -0.6 856,837 + +1.0 856,837 + -0.6 856,837 + -0.6 856,837 + -1.8 856,837 + -0.0 856,837 + -0.3 856,837 + -0.0 856,837 + -0.3 856,837 + +1.0 856,837 + -0.6 856,837 + -0.0 856,837 + +0.2 856,837 + +0.4 856,838 - -1.2 856,838 - -1.8 856,838 - +1.0 856,838 - -0.7 856,838 - +0.5 856,838 - +0.7 856,838 - -0.4 856,838 - -1.0 856,868 + -0.5 856,868 + -0.8 856,869 - -0.7 856,907 - -0.7 856,981 + -2.1 856,981 + +1.0 856,982 - -0.0 856,982 - -1.3 856,982 - +1.0 856,982 - -0.0 856,982 - +0.3 856,982 - -0.0 857,092 - LRK53_RS03635 0.32 -0.0 857,146 - LRK53_RS03635 0.64 -1.7 857,146 - LRK53_RS03635 0.64 -0.6 857,697 + +0.4 857,697 + -0.0 857,697 + +1.0 857,697 + +1.0 857,697 + -0.2 857,697 + -0.4 857,697 + +1.0 857,697 + -1.0 857,697 + -0.6 857,697 + +2.6 857,697 + +1.0 857,697 + -0.6 857,697 + +1.0 857,697 + -0.0 857,697 + -0.6 857,697 + -0.0 857,697 + -0.0 857,697 + +2.6 857,697 + +1.0 857,697 + +0.4 857,697 + -0.6 857,697 + +1.0 857,697 + -0.4 857,697 + -0.3 857,697 + -0.3 857,697 + +2.3 857,697 + -1.2 857,697 + -1.6 857,697 + -0.0 857,697 + -0.6 857,697 + -0.4 857,697 + +1.0 857,697 + -0.6 857,697 + +1.0 857,697 + -1.6 857,697 + -0.0 857,697 + -1.3 857,697 + -0.6 857,697 + -0.0 857,697 + -2.7 857,697 + -0.3 857,697 + -1.1 857,697 + -0.3 857,697 + -0.5 857,697 + -0.0 857,697 + +1.6 857,698 - -1.2 857,698 - +0.3 857,698 - -0.4 857,698 - -0.0 857,698 - +1.4 857,698 - -1.1 857,698 - -1.2 857,698 - -1.1 857,698 - +1.0 857,698 - -1.0 857,698 - -1.0 857,698 - -0.3 857,698 - -0.0 857,698 - -1.9 857,698 - -0.7 857,698 - -0.0 857,698 - +0.4 857,698 - -0.0 857,698 - -2.0 857,698 - -0.3 857,698 - -0.6 857,698 - -1.0 857,698 - -0.8 857,698 - -1.7 857,698 - -1.3 857,698 - -2.3 857,698 - -0.0 857,698 - -2.5 857,698 - +0.7 857,698 - -0.5 857,720 + -0.3 857,720 + -1.6
Or see this region's nucleotide sequence