Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03195

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03190 and LRK53_RS03195 overlap by 23 nucleotidesLRK53_RS03195 and LRK53_RS03200 are separated by 5 nucleotides LRK53_RS03190: LRK53_RS03190 - sedoheptulose 7-phosphate cyclase, at 744,997 to 746,148 _RS03190 LRK53_RS03195: LRK53_RS03195 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 746,126 to 746,836 _RS03195 LRK53_RS03200: LRK53_RS03200 - UbiA family prenyltransferase, at 746,842 to 747,735 _RS03200 Position (kb) 746 747Strain fitness (log2 ratio) -2 -1 0 1 2at 745.189 kb on + strand, within LRK53_RS03190at 745.189 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.355 kb on + strand, within LRK53_RS03190at 745.356 kb on - strand, within LRK53_RS03190at 745.379 kb on - strand, within LRK53_RS03190at 745.379 kb on - strand, within LRK53_RS03190at 745.426 kb on + strand, within LRK53_RS03190at 745.427 kb on - strand, within LRK53_RS03190at 745.427 kb on - strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.773 kb on + strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.774 kb on - strand, within LRK53_RS03190at 745.783 kb on + strand, within LRK53_RS03190at 745.783 kb on + strand, within LRK53_RS03190at 745.784 kb on - strand, within LRK53_RS03190at 745.784 kb on - strand, within LRK53_RS03190at 746.097 kb on + strandat 746.097 kb on + strandat 746.097 kb on + strandat 746.097 kb on + strandat 746.097 kb on + strandat 746.097 kb on + strandat 746.098 kb on - strandat 746.098 kb on - strandat 746.098 kb on - strandat 746.098 kb on - strandat 746.285 kb on - strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.633 kb on + strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.634 kb on - strand, within LRK53_RS03195at 746.669 kb on + strand, within LRK53_RS03195at 746.669 kb on + strand, within LRK53_RS03195at 746.670 kb on - strand, within LRK53_RS03195at 746.670 kb on - strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.753 kb on + strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.754 kb on - strand, within LRK53_RS03195at 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.984 kb on - strand, within LRK53_RS03200at 746.984 kb on - strand, within LRK53_RS03200at 746.985 kb on + strand, within LRK53_RS03200at 746.985 kb on + strand, within LRK53_RS03200at 746.986 kb on - strand, within LRK53_RS03200at 746.986 kb on - strand, within LRK53_RS03200at 746.986 kb on - strand, within LRK53_RS03200at 746.995 kb on + strand, within LRK53_RS03200at 746.995 kb on + strand, within LRK53_RS03200at 746.995 kb on + strand, within LRK53_RS03200at 746.995 kb on + strand, within LRK53_RS03200at 746.995 kb on + strand, within LRK53_RS03200at 746.996 kb on - strand, within LRK53_RS03200at 746.996 kb on - strand, within LRK53_RS03200at 746.996 kb on - strand, within LRK53_RS03200at 746.996 kb on - strand, within LRK53_RS03200at 747.235 kb on + strand, within LRK53_RS03200at 747.236 kb on - strand, within LRK53_RS03200at 747.236 kb on - strand, within LRK53_RS03200at 747.685 kb on + strandat 747.776 kb on + strandat 747.776 kb on + strandat 747.776 kb on + strandat 747.776 kb on + strandat 747.777 kb on - strandat 747.777 kb on - strandat 747.777 kb on - strandat 747.777 kb on - strandat 747.811 kb on - strandat 747.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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745,189 + LRK53_RS03190 0.17 -0.0
745,189 + LRK53_RS03190 0.17 +0.7
745,355 + LRK53_RS03190 0.31 -0.0
745,355 + LRK53_RS03190 0.31 +0.2
745,355 + LRK53_RS03190 0.31 +0.2
745,356 - LRK53_RS03190 0.31 +1.0
745,379 - LRK53_RS03190 0.33 -0.5
745,379 - LRK53_RS03190 0.33 +1.0
745,426 + LRK53_RS03190 0.37 -0.0
745,427 - LRK53_RS03190 0.37 +0.2
745,427 - LRK53_RS03190 0.37 +0.3
745,773 + LRK53_RS03190 0.67 -0.3
745,773 + LRK53_RS03190 0.67 -1.4
745,773 + LRK53_RS03190 0.67 -1.3
745,773 + LRK53_RS03190 0.67 -0.2
745,773 + LRK53_RS03190 0.67 +1.6
745,773 + LRK53_RS03190 0.67 -0.8
745,773 + LRK53_RS03190 0.67 -0.6
745,773 + LRK53_RS03190 0.67 -0.0
745,774 - LRK53_RS03190 0.67 +0.2
745,774 - LRK53_RS03190 0.67 -1.0
745,774 - LRK53_RS03190 0.67 -0.0
745,774 - LRK53_RS03190 0.67 +0.8
745,774 - LRK53_RS03190 0.67 +0.4
745,774 - LRK53_RS03190 0.67 -0.0
745,783 + LRK53_RS03190 0.68 +0.6
745,783 + LRK53_RS03190 0.68 +1.0
745,784 - LRK53_RS03190 0.68 -1.0
745,784 - LRK53_RS03190 0.68 -0.0
746,097 + +1.0
746,097 + -1.2
746,097 + -1.0
746,097 + -1.3
746,097 + -1.1
746,097 + -0.1
746,098 - -2.7
746,098 - -0.8
746,098 - -0.3
746,098 - -0.0
746,285 - LRK53_RS03195 0.22 -0.0
746,633 + LRK53_RS03195 0.71 -0.8
746,633 + LRK53_RS03195 0.71 +2.0
746,633 + LRK53_RS03195 0.71 -1.3
746,633 + LRK53_RS03195 0.71 -0.2
746,633 + LRK53_RS03195 0.71 -1.2
746,633 + LRK53_RS03195 0.71 +0.2
746,634 - LRK53_RS03195 0.71 -1.0
746,634 - LRK53_RS03195 0.71 -0.6
746,634 - LRK53_RS03195 0.71 -1.2
746,634 - LRK53_RS03195 0.71 -1.1
746,634 - LRK53_RS03195 0.71 -0.7
746,634 - LRK53_RS03195 0.71 +2.0
746,634 - LRK53_RS03195 0.71 +0.4
746,669 + LRK53_RS03195 0.76 +0.2
746,669 + LRK53_RS03195 0.76 -0.6
746,670 - LRK53_RS03195 0.77 -0.0
746,670 - LRK53_RS03195 0.77 -0.8
746,753 + LRK53_RS03195 0.88 -1.2
746,753 + LRK53_RS03195 0.88 -1.0
746,753 + LRK53_RS03195 0.88 -1.8
746,753 + LRK53_RS03195 0.88 -0.6
746,753 + LRK53_RS03195 0.88 -0.6
746,753 + LRK53_RS03195 0.88 -0.6
746,753 + LRK53_RS03195 0.88 -2.3
746,753 + LRK53_RS03195 0.88 +1.0
746,753 + LRK53_RS03195 0.88 -0.4
746,753 + LRK53_RS03195 0.88 -0.0
746,753 + LRK53_RS03195 0.88 -0.0
746,753 + LRK53_RS03195 0.88 -0.7
746,753 + LRK53_RS03195 0.88 -0.6
746,753 + LRK53_RS03195 0.88 -0.8
746,753 + LRK53_RS03195 0.88 +2.0
746,754 - LRK53_RS03195 0.88 -0.0
746,754 - LRK53_RS03195 0.88 -0.0
746,754 - LRK53_RS03195 0.88 -1.3
746,754 - LRK53_RS03195 0.88 -1.0
746,754 - LRK53_RS03195 0.88 -0.0
746,754 - LRK53_RS03195 0.88 -1.3
746,754 - LRK53_RS03195 0.88 -2.3
746,754 - LRK53_RS03195 0.88 -0.6
746,754 - LRK53_RS03195 0.88 +0.2
746,754 - LRK53_RS03195 0.88 -2.3
746,754 - LRK53_RS03195 0.88 -0.9
746,754 - LRK53_RS03195 0.88 +0.6
746,754 - LRK53_RS03195 0.88 +2.6
746,754 - LRK53_RS03195 0.88 -1.6
746,754 - LRK53_RS03195 0.88 -0.0
746,754 - LRK53_RS03195 0.88 +0.4
746,807 + -1.0
746,807 + -0.0
746,807 + +1.0
746,807 + -0.9
746,807 + -0.3
746,807 + +0.4
746,807 + +0.7
746,807 + -0.7
746,807 + -0.0
746,807 + +0.6
746,807 + -2.6
746,807 + -0.8
746,807 + -0.5
746,807 + +0.1
746,808 - -0.5
746,808 - +2.0
746,808 - -0.4
746,808 - +1.0
746,808 - -0.2
746,808 - -1.0
746,808 - -1.1
746,808 - -0.4
746,808 - +0.2
746,808 - -0.2
746,808 - +1.0
746,808 - -1.1
746,808 - +1.4
746,808 - +1.4
746,808 - +1.0
746,808 - +0.4
746,808 - -0.8
746,808 - -1.6
746,808 - -0.9
746,808 - -0.0
746,808 - -0.7
746,984 - LRK53_RS03200 0.16 -0.6
746,984 - LRK53_RS03200 0.16 -0.0
746,985 + LRK53_RS03200 0.16 -1.0
746,985 + LRK53_RS03200 0.16 -1.3
746,986 - LRK53_RS03200 0.16 +0.2
746,986 - LRK53_RS03200 0.16 -1.5
746,986 - LRK53_RS03200 0.16 +0.2
746,995 + LRK53_RS03200 0.17 -1.3
746,995 + LRK53_RS03200 0.17 -2.0
746,995 + LRK53_RS03200 0.17 -1.6
746,995 + LRK53_RS03200 0.17 -0.6
746,995 + LRK53_RS03200 0.17 -1.2
746,996 - LRK53_RS03200 0.17 -0.6
746,996 - LRK53_RS03200 0.17 +0.4
746,996 - LRK53_RS03200 0.17 +0.4
746,996 - LRK53_RS03200 0.17 -1.0
747,235 + LRK53_RS03200 0.44 -1.6
747,236 - LRK53_RS03200 0.44 -1.0
747,236 - LRK53_RS03200 0.44 +0.6
747,685 + -1.7
747,776 + -0.9
747,776 + -0.0
747,776 + -1.7
747,776 + -1.8
747,777 - -0.7
747,777 - -0.3
747,777 - -0.5
747,777 - +1.0
747,811 - +2.0
747,811 - -2.2

Or see this region's nucleotide sequence