Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03160

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03155 and LRK53_RS03160 are separated by 164 nucleotidesLRK53_RS03160 and LRK53_RS03165 overlap by 4 nucleotides LRK53_RS03155: LRK53_RS03155 - threonine synthase, at 736,927 to 738,234 _RS03155 LRK53_RS03160: LRK53_RS03160 - homoserine kinase, at 738,399 to 739,397 _RS03160 LRK53_RS03165: LRK53_RS03165 - homoserine dehydrogenase, at 739,394 to 740,545 _RS03165 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 737.410 kb on + strand, within LRK53_RS03155at 737.410 kb on + strand, within LRK53_RS03155at 737.410 kb on + strand, within LRK53_RS03155at 737.411 kb on - strand, within LRK53_RS03155at 737.411 kb on - strand, within LRK53_RS03155at 737.540 kb on + strand, within LRK53_RS03155at 737.541 kb on - strand, within LRK53_RS03155at 737.541 kb on - strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.134 kb on + strandat 738.135 kb on - strandat 738.135 kb on - strandat 738.135 kb on - strandat 738.135 kb on - strandat 738.135 kb on - strandat 738.135 kb on - strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.234 kb on + strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.235 kb on - strandat 738.315 kb on + strandat 738.315 kb on + strandat 738.315 kb on + strandat 738.370 kb on + strandat 738.371 kb on - strandat 738.391 kb on + strandat 738.392 kb on - strandat 738.547 kb on + strand, within LRK53_RS03160at 738.548 kb on - strand, within LRK53_RS03160at 738.548 kb on - strand, within LRK53_RS03160at 738.548 kb on - strand, within LRK53_RS03160at 738.976 kb on + strand, within LRK53_RS03160at 738.976 kb on + strand, within LRK53_RS03160at 738.977 kb on - strand, within LRK53_RS03160at 739.308 kb on + strandat 739.309 kb on - strandat 739.383 kb on + strandat 739.383 kb on + strandat 739.498 kb on + strandat 739.507 kb on - strandat 739.864 kb on - strand, within LRK53_RS03165at 739.864 kb on - strand, within LRK53_RS03165at 739.864 kb on - strand, within LRK53_RS03165at 740.044 kb on - strand, within LRK53_RS03165at 740.163 kb on + strand, within LRK53_RS03165at 740.163 kb on + strand, within LRK53_RS03165at 740.163 kb on + strand, within LRK53_RS03165at 740.164 kb on - strand, within LRK53_RS03165

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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737,410 + LRK53_RS03155 0.37 -0.8
737,410 + LRK53_RS03155 0.37 +1.0
737,410 + LRK53_RS03155 0.37 -1.9
737,411 - LRK53_RS03155 0.37 +1.0
737,411 - LRK53_RS03155 0.37 +2.0
737,540 + LRK53_RS03155 0.47 -0.0
737,541 - LRK53_RS03155 0.47 -1.1
737,541 - LRK53_RS03155 0.47 -0.0
737,543 + LRK53_RS03155 0.47 -1.0
737,543 + LRK53_RS03155 0.47 -0.9
737,543 + LRK53_RS03155 0.47 +1.0
737,544 - LRK53_RS03155 0.47 +2.6
737,544 - LRK53_RS03155 0.47 -1.6
737,544 - LRK53_RS03155 0.47 -0.9
737,544 - LRK53_RS03155 0.47 -0.3
737,544 - LRK53_RS03155 0.47 +1.0
737,544 - LRK53_RS03155 0.47 -0.4
737,544 - LRK53_RS03155 0.47 -0.0
737,544 - LRK53_RS03155 0.47 -2.2
738,134 + -0.0
738,134 + -1.5
738,134 + -1.8
738,134 + -1.4
738,134 + -1.4
738,134 + +0.4
738,134 + +1.0
738,134 + -2.8
738,135 - -1.6
738,135 - -0.4
738,135 - -0.6
738,135 - +1.0
738,135 - -0.6
738,135 - -0.6
738,234 + -0.6
738,234 + -0.6
738,234 + +2.0
738,234 + +0.2
738,234 + -0.0
738,234 + +1.0
738,234 + +1.0
738,234 + +1.0
738,234 + +1.0
738,234 + +0.2
738,234 + -1.5
738,234 + +1.0
738,234 + -0.1
738,234 + -1.5
738,234 + -0.1
738,234 + +0.6
738,235 - -0.3
738,235 - +0.6
738,235 - +0.4
738,235 - -0.9
738,235 - -0.0
738,235 - -1.4
738,235 - -1.7
738,235 - +1.0
738,235 - -1.8
738,235 - +1.0
738,235 - -0.6
738,235 - -0.6
738,235 - -0.4
738,235 - -1.8
738,235 - -1.0
738,235 - -0.0
738,235 - -0.6
738,235 - -0.0
738,235 - -0.4
738,235 - +0.4
738,315 + -0.8
738,315 + -1.3
738,315 + +1.6
738,370 + -0.8
738,371 - +2.0
738,391 + -0.8
738,392 - -0.0
738,547 + LRK53_RS03160 0.15 -0.6
738,548 - LRK53_RS03160 0.15 -1.0
738,548 - LRK53_RS03160 0.15 -1.0
738,548 - LRK53_RS03160 0.15 -0.2
738,976 + LRK53_RS03160 0.58 -1.6
738,976 + LRK53_RS03160 0.58 -0.3
738,977 - LRK53_RS03160 0.58 -0.6
739,308 + -0.6
739,309 - -0.4
739,383 + +2.6
739,383 + +1.0
739,498 + -0.6
739,507 - -0.0
739,864 - LRK53_RS03165 0.41 -1.8
739,864 - LRK53_RS03165 0.41 -0.9
739,864 - LRK53_RS03165 0.41 -1.0
740,044 - LRK53_RS03165 0.56 -0.8
740,163 + LRK53_RS03165 0.67 -0.4
740,163 + LRK53_RS03165 0.67 -1.6
740,163 + LRK53_RS03165 0.67 -1.0
740,164 - LRK53_RS03165 0.67 -0.6

Or see this region's nucleotide sequence