Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02965

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02960 and LRK53_RS02965 are separated by 146 nucleotidesLRK53_RS02965 and LRK53_RS02970 are separated by 62 nucleotides LRK53_RS02960: LRK53_RS02960 - RNA-binding transcriptional accessory protein, at 686,638 to 688,968 _RS02960 LRK53_RS02965: LRK53_RS02965 - RDD family protein, at 689,115 to 689,888 _RS02965 LRK53_RS02970: LRK53_RS02970 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 689,951 to 691,828 _RS02970 Position (kb) 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 688.352 kb on + strand, within LRK53_RS02960at 688.352 kb on + strand, within LRK53_RS02960at 688.353 kb on - strand, within LRK53_RS02960at 688.353 kb on - strand, within LRK53_RS02960at 688.353 kb on - strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.664 kb on + strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.665 kb on - strand, within LRK53_RS02960at 688.791 kb on - strandat 688.791 kb on - strandat 689.029 kb on + strandat 689.029 kb on + strandat 689.029 kb on + strandat 689.029 kb on + strandat 689.030 kb on - strandat 689.030 kb on - strandat 689.293 kb on + strand, within LRK53_RS02965at 689.400 kb on + strand, within LRK53_RS02965at 689.401 kb on - strand, within LRK53_RS02965at 689.401 kb on - strand, within LRK53_RS02965at 689.401 kb on - strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.410 kb on + strand, within LRK53_RS02965at 689.411 kb on - strand, within LRK53_RS02965at 689.411 kb on - strand, within LRK53_RS02965at 689.411 kb on - strand, within LRK53_RS02965at 689.411 kb on - strand, within LRK53_RS02965at 689.411 kb on - strand, within LRK53_RS02965at 689.424 kb on + strand, within LRK53_RS02965at 689.461 kb on + strand, within LRK53_RS02965at 689.461 kb on + strand, within LRK53_RS02965at 689.461 kb on + strand, within LRK53_RS02965at 689.462 kb on - strand, within LRK53_RS02965at 689.462 kb on - strand, within LRK53_RS02965at 689.462 kb on - strand, within LRK53_RS02965at 689.462 kb on - strand, within LRK53_RS02965at 689.462 kb on - strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.464 kb on + strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.465 kb on - strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.584 kb on + strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.585 kb on - strand, within LRK53_RS02965at 689.608 kb on + strand, within LRK53_RS02965at 689.608 kb on + strand, within LRK53_RS02965at 689.608 kb on + strand, within LRK53_RS02965at 689.608 kb on + strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.609 kb on - strand, within LRK53_RS02965at 689.638 kb on + strand, within LRK53_RS02965at 689.638 kb on + strand, within LRK53_RS02965at 689.638 kb on + strand, within LRK53_RS02965at 689.638 kb on + strand, within LRK53_RS02965at 689.639 kb on - strand, within LRK53_RS02965at 689.639 kb on - strand, within LRK53_RS02965at 689.639 kb on - strand, within LRK53_RS02965at 689.639 kb on - strand, within LRK53_RS02965at 689.639 kb on - strand, within LRK53_RS02965at 689.695 kb on + strand, within LRK53_RS02965at 689.845 kb on + strandat 689.845 kb on + strandat 689.845 kb on + strandat 689.845 kb on + strandat 689.845 kb on + strandat 689.845 kb on + strandat 689.845 kb on + strandat 689.846 kb on - strandat 689.846 kb on - strandat 689.846 kb on - strandat 689.846 kb on - strandat 689.846 kb on - strandat 689.846 kb on - strandat 690.178 kb on - strand, within LRK53_RS02970at 690.186 kb on + strand, within LRK53_RS02970at 690.186 kb on + strand, within LRK53_RS02970at 690.187 kb on - strand, within LRK53_RS02970at 690.242 kb on + strand, within LRK53_RS02970at 690.271 kb on - strand, within LRK53_RS02970at 690.271 kb on - strand, within LRK53_RS02970at 690.553 kb on - strand, within LRK53_RS02970at 690.603 kb on + strand, within LRK53_RS02970at 690.603 kb on + strand, within LRK53_RS02970at 690.603 kb on + strand, within LRK53_RS02970at 690.604 kb on - strand, within LRK53_RS02970at 690.604 kb on - strand, within LRK53_RS02970at 690.604 kb on - strand, within LRK53_RS02970at 690.732 kb on + strand, within LRK53_RS02970at 690.732 kb on + strand, within LRK53_RS02970at 690.732 kb on + strand, within LRK53_RS02970at 690.733 kb on - strand, within LRK53_RS02970at 690.733 kb on - strand, within LRK53_RS02970at 690.733 kb on - strand, within LRK53_RS02970at 690.789 kb on + strand, within LRK53_RS02970at 690.789 kb on + strand, within LRK53_RS02970at 690.789 kb on + strand, within LRK53_RS02970at 690.789 kb on + strand, within LRK53_RS02970at 690.789 kb on + strand, within LRK53_RS02970at 690.790 kb on - strand, within LRK53_RS02970at 690.795 kb on + strand, within LRK53_RS02970at 690.795 kb on + strand, within LRK53_RS02970at 690.795 kb on + strand, within LRK53_RS02970at 690.876 kb on + strand, within LRK53_RS02970at 690.876 kb on + strand, within LRK53_RS02970at 690.876 kb on + strand, within LRK53_RS02970at 690.877 kb on - strand, within LRK53_RS02970

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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688,352 + LRK53_RS02960 0.74 -1.0
688,352 + LRK53_RS02960 0.74 -1.8
688,353 - LRK53_RS02960 0.74 -0.2
688,353 - LRK53_RS02960 0.74 +0.4
688,353 - LRK53_RS02960 0.74 +1.0
688,664 + LRK53_RS02960 0.87 -0.6
688,664 + LRK53_RS02960 0.87 -0.2
688,664 + LRK53_RS02960 0.87 -0.6
688,664 + LRK53_RS02960 0.87 +1.0
688,664 + LRK53_RS02960 0.87 -0.0
688,664 + LRK53_RS02960 0.87 +1.0
688,664 + LRK53_RS02960 0.87 -0.6
688,664 + LRK53_RS02960 0.87 -0.6
688,664 + LRK53_RS02960 0.87 -0.2
688,664 + LRK53_RS02960 0.87 +1.7
688,664 + LRK53_RS02960 0.87 -1.0
688,664 + LRK53_RS02960 0.87 -0.3
688,665 - LRK53_RS02960 0.87 -1.3
688,665 - LRK53_RS02960 0.87 -1.6
688,665 - LRK53_RS02960 0.87 -0.0
688,665 - LRK53_RS02960 0.87 -1.0
688,665 - LRK53_RS02960 0.87 +0.2
688,665 - LRK53_RS02960 0.87 -1.0
688,665 - LRK53_RS02960 0.87 -0.8
688,665 - LRK53_RS02960 0.87 +1.4
688,665 - LRK53_RS02960 0.87 -1.2
688,791 - +0.3
688,791 - -0.7
689,029 + -0.3
689,029 + -0.3
689,029 + -0.6
689,029 + -1.0
689,030 - +2.0
689,030 - +1.0
689,293 + LRK53_RS02965 0.23 -1.3
689,400 + LRK53_RS02965 0.37 -0.6
689,401 - LRK53_RS02965 0.37 -2.0
689,401 - LRK53_RS02965 0.37 -0.0
689,401 - LRK53_RS02965 0.37 +0.4
689,410 + LRK53_RS02965 0.38 +1.6
689,410 + LRK53_RS02965 0.38 +0.4
689,410 + LRK53_RS02965 0.38 -2.2
689,410 + LRK53_RS02965 0.38 +1.0
689,410 + LRK53_RS02965 0.38 -1.3
689,410 + LRK53_RS02965 0.38 -0.5
689,410 + LRK53_RS02965 0.38 -1.3
689,411 - LRK53_RS02965 0.38 -0.6
689,411 - LRK53_RS02965 0.38 -2.6
689,411 - LRK53_RS02965 0.38 -2.2
689,411 - LRK53_RS02965 0.38 -0.2
689,411 - LRK53_RS02965 0.38 -1.0
689,424 + LRK53_RS02965 0.40 +0.2
689,461 + LRK53_RS02965 0.45 -1.6
689,461 + LRK53_RS02965 0.45 -0.2
689,461 + LRK53_RS02965 0.45 -0.8
689,462 - LRK53_RS02965 0.45 -2.2
689,462 - LRK53_RS02965 0.45 -1.0
689,462 - LRK53_RS02965 0.45 -0.3
689,462 - LRK53_RS02965 0.45 -2.3
689,462 - LRK53_RS02965 0.45 -0.0
689,464 + LRK53_RS02965 0.45 -1.3
689,464 + LRK53_RS02965 0.45 +0.7
689,464 + LRK53_RS02965 0.45 -0.3
689,464 + LRK53_RS02965 0.45 -1.0
689,464 + LRK53_RS02965 0.45 -0.5
689,464 + LRK53_RS02965 0.45 -0.4
689,464 + LRK53_RS02965 0.45 +0.4
689,464 + LRK53_RS02965 0.45 -2.2
689,465 - LRK53_RS02965 0.45 -2.3
689,465 - LRK53_RS02965 0.45 -1.2
689,465 - LRK53_RS02965 0.45 -0.0
689,465 - LRK53_RS02965 0.45 +1.0
689,465 - LRK53_RS02965 0.45 -1.0
689,465 - LRK53_RS02965 0.45 -0.5
689,465 - LRK53_RS02965 0.45 -1.0
689,465 - LRK53_RS02965 0.45 +1.0
689,584 + LRK53_RS02965 0.61 -1.7
689,584 + LRK53_RS02965 0.61 -0.6
689,584 + LRK53_RS02965 0.61 -0.0
689,584 + LRK53_RS02965 0.61 +0.4
689,584 + LRK53_RS02965 0.61 -0.1
689,584 + LRK53_RS02965 0.61 +1.0
689,584 + LRK53_RS02965 0.61 -0.6
689,584 + LRK53_RS02965 0.61 +0.4
689,584 + LRK53_RS02965 0.61 -0.4
689,584 + LRK53_RS02965 0.61 -0.3
689,584 + LRK53_RS02965 0.61 -0.6
689,584 + LRK53_RS02965 0.61 -1.3
689,584 + LRK53_RS02965 0.61 -0.0
689,584 + LRK53_RS02965 0.61 +0.4
689,585 - LRK53_RS02965 0.61 -1.0
689,585 - LRK53_RS02965 0.61 -1.7
689,585 - LRK53_RS02965 0.61 -1.3
689,585 - LRK53_RS02965 0.61 -0.6
689,585 - LRK53_RS02965 0.61 +0.6
689,585 - LRK53_RS02965 0.61 +1.0
689,585 - LRK53_RS02965 0.61 -0.0
689,585 - LRK53_RS02965 0.61 -1.0
689,585 - LRK53_RS02965 0.61 -1.2
689,585 - LRK53_RS02965 0.61 -0.0
689,585 - LRK53_RS02965 0.61 +1.0
689,585 - LRK53_RS02965 0.61 -1.0
689,585 - LRK53_RS02965 0.61 -0.0
689,585 - LRK53_RS02965 0.61 -0.3
689,585 - LRK53_RS02965 0.61 -1.0
689,585 - LRK53_RS02965 0.61 -0.0
689,608 + LRK53_RS02965 0.64 -0.6
689,608 + LRK53_RS02965 0.64 -1.2
689,608 + LRK53_RS02965 0.64 +0.4
689,608 + LRK53_RS02965 0.64 +0.6
689,609 - LRK53_RS02965 0.64 +0.4
689,609 - LRK53_RS02965 0.64 -0.6
689,609 - LRK53_RS02965 0.64 -0.8
689,609 - LRK53_RS02965 0.64 -2.5
689,609 - LRK53_RS02965 0.64 -1.8
689,609 - LRK53_RS02965 0.64 +1.0
689,609 - LRK53_RS02965 0.64 -0.7
689,609 - LRK53_RS02965 0.64 +0.6
689,638 + LRK53_RS02965 0.68 -1.6
689,638 + LRK53_RS02965 0.68 -0.0
689,638 + LRK53_RS02965 0.68 -0.6
689,638 + LRK53_RS02965 0.68 -1.1
689,639 - LRK53_RS02965 0.68 -0.0
689,639 - LRK53_RS02965 0.68 -1.3
689,639 - LRK53_RS02965 0.68 -0.9
689,639 - LRK53_RS02965 0.68 -1.3
689,639 - LRK53_RS02965 0.68 -0.2
689,695 + LRK53_RS02965 0.75 +1.0
689,845 + -0.0
689,845 + -1.6
689,845 + -1.3
689,845 + -1.0
689,845 + -0.0
689,845 + -1.0
689,845 + -1.8
689,846 - -2.2
689,846 - -0.6
689,846 - -0.2
689,846 - -1.0
689,846 - -0.8
689,846 - +0.2
690,178 - LRK53_RS02970 0.12 +2.0
690,186 + LRK53_RS02970 0.13 +1.0
690,186 + LRK53_RS02970 0.13 +0.4
690,187 - LRK53_RS02970 0.13 -1.0
690,242 + LRK53_RS02970 0.15 -0.4
690,271 - LRK53_RS02970 0.17 +1.0
690,271 - LRK53_RS02970 0.17 -0.6
690,553 - LRK53_RS02970 0.32 -1.0
690,603 + LRK53_RS02970 0.35 -0.0
690,603 + LRK53_RS02970 0.35 -0.0
690,603 + LRK53_RS02970 0.35 -0.0
690,604 - LRK53_RS02970 0.35 -0.3
690,604 - LRK53_RS02970 0.35 +0.6
690,604 - LRK53_RS02970 0.35 -0.8
690,732 + LRK53_RS02970 0.42 -0.6
690,732 + LRK53_RS02970 0.42 +2.0
690,732 + LRK53_RS02970 0.42 -1.0
690,733 - LRK53_RS02970 0.42 -0.0
690,733 - LRK53_RS02970 0.42 -0.0
690,733 - LRK53_RS02970 0.42 -0.6
690,789 + LRK53_RS02970 0.45 -0.8
690,789 + LRK53_RS02970 0.45 -0.0
690,789 + LRK53_RS02970 0.45 -1.6
690,789 + LRK53_RS02970 0.45 -0.0
690,789 + LRK53_RS02970 0.45 -1.2
690,790 - LRK53_RS02970 0.45 -1.0
690,795 + LRK53_RS02970 0.45 -1.0
690,795 + LRK53_RS02970 0.45 -0.8
690,795 + LRK53_RS02970 0.45 +0.8
690,876 + LRK53_RS02970 0.49 -1.0
690,876 + LRK53_RS02970 0.49 +1.7
690,876 + LRK53_RS02970 0.49 -0.3
690,877 - LRK53_RS02970 0.49 -1.4

Or see this region's nucleotide sequence