Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02835 and LRK53_RS02840 are separated by 95 nucleotides LRK53_RS02840 and LRK53_RS02845 are separated by 13 nucleotides LRK53_RS02845 and LRK53_RS02850 are separated by 336 nucleotides LRK53_RS02850 and LRK53_RS02855 are separated by 122 nucleotides
LRK53_RS02835: LRK53_RS02835 - ATP-dependent RNA helicase DbpA, at 657,460 to 658,839
_RS02835
LRK53_RS02840: LRK53_RS02840 - dihydroneopterin aldolase, at 658,935 to 659,291
_RS02840
LRK53_RS02845: LRK53_RS02845 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 659,305 to 659,793
_RS02845
LRK53_RS02850: LRK53_RS02850 - response regulator, at 660,130 to 660,564
_RS02850
LRK53_RS02855: LRK53_RS02855 - tetratricopeptide repeat protein, at 660,687 to 661,007
_RS02855
Position (kb) 659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.775 kb on + strand at 658.907 kb on + strand at 658.907 kb on + strand at 658.907 kb on + strand at 658.907 kb on + strand at 659.290 kb on - strand at 659.318 kb on - strand at 659.353 kb on + strand at 659.417 kb on - strand, within LRK53_RS02845 at 659.596 kb on + strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 659.597 kb on - strand, within LRK53_RS02845 at 660.217 kb on + strand, within LRK53_RS02850 at 660.217 kb on + strand, within LRK53_RS02850 at 660.218 kb on - strand, within LRK53_RS02850 at 660.300 kb on - strand, within LRK53_RS02850 at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.688 kb on + strand at 660.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 658,775 + -1.3 658,907 + -2.2 658,907 + -1.0 658,907 + -0.6 658,907 + -0.4 659,290 - -1.8 659,318 - -1.8 659,353 + -1.8 659,417 - LRK53_RS02845 0.23 +1.0 659,596 + LRK53_RS02845 0.60 -0.6 659,597 - LRK53_RS02845 0.60 -0.8 659,597 - LRK53_RS02845 0.60 -1.0 659,597 - LRK53_RS02845 0.60 -1.0 659,597 - LRK53_RS02845 0.60 -1.7 660,217 + LRK53_RS02850 0.20 +1.0 660,217 + LRK53_RS02850 0.20 +1.0 660,218 - LRK53_RS02850 0.20 +1.0 660,300 - LRK53_RS02850 0.39 -0.0 660,568 + -1.4 660,568 + -1.6 660,568 + -1.4 660,568 + -0.6 660,568 + +1.0 660,568 + +2.6 660,568 + -1.5 660,568 + -0.3 660,568 + -1.4 660,568 + +1.0 660,568 + +0.4 660,568 + +0.2 660,568 + +0.4 660,568 + -1.2 660,568 + -0.8 660,569 - -1.3 660,569 - -0.4 660,569 - -0.4 660,569 - +1.0 660,569 - -0.6 660,569 - +1.4 660,569 - -0.6 660,569 - +0.4 660,569 - -1.3 660,569 - -1.0 660,569 - +0.2 660,569 - +0.6 660,688 + +0.2 660,689 - -1.0
Or see this region's nucleotide sequence