Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02525 and LRK53_RS02530 are separated by 151 nucleotides LRK53_RS02530 and LRK53_RS02535 are separated by 99 nucleotides LRK53_RS02535 and LRK53_RS02540 are separated by 60 nucleotides LRK53_RS02540 and LRK53_RS02545 are separated by 149 nucleotides
LRK53_RS02525: LRK53_RS02525 - transcriptional regulator, at 577,331 to 578,314
_RS02525
LRK53_RS02530: LRK53_RS02530 - hypothetical protein, at 578,466 to 578,663
_RS02530
LRK53_RS02535: LRK53_RS02535 - DUF481 domain-containing protein, at 578,763 to 579,572
_RS02535
LRK53_RS02540: LRK53_RS02540 - hypothetical protein, at 579,633 to 580,304
_RS02540
LRK53_RS02545: LRK53_RS02545 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 580,454 to 581,197
_RS02545
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 577.764 kb on + strand, within LRK53_RS02525 at 578.125 kb on - strand, within LRK53_RS02525 at 578.125 kb on - strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.202 kb on + strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.203 kb on - strand, within LRK53_RS02525 at 578.259 kb on + strand at 578.259 kb on + strand at 578.259 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.294 kb on + strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.295 kb on - strand at 578.297 kb on - strand at 578.305 kb on - strand at 578.305 kb on - strand at 578.326 kb on + strand at 578.326 kb on + strand at 578.326 kb on + strand at 578.327 kb on - strand at 578.327 kb on - strand at 578.327 kb on - strand at 578.349 kb on + strand at 578.349 kb on + strand at 578.349 kb on + strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.350 kb on - strand at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.490 kb on + strand, within LRK53_RS02530 at 578.491 kb on - strand, within LRK53_RS02530 at 578.512 kb on + strand, within LRK53_RS02530 at 578.622 kb on + strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.623 kb on - strand, within LRK53_RS02530 at 578.722 kb on + strand at 578.722 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.734 kb on + strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.742 kb on - strand at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.132 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.194 kb on + strand, within LRK53_RS02535 at 579.195 kb on - strand, within LRK53_RS02535 at 579.247 kb on - strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.493 kb on + strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.617 kb on + strand at 579.618 kb on - strand at 579.634 kb on + strand at 579.634 kb on + strand at 579.635 kb on - strand at 579.635 kb on - strand at 580.310 kb on + strand at 580.335 kb on + strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 577,764 + LRK53_RS02525 0.44 -0.4 578,125 - LRK53_RS02525 0.81 +0.0 578,125 - LRK53_RS02525 0.81 -1.8 578,202 + LRK53_RS02525 0.89 -0.6 578,202 + LRK53_RS02525 0.89 +2.0 578,202 + LRK53_RS02525 0.89 -0.4 578,202 + LRK53_RS02525 0.89 +0.4 578,203 - LRK53_RS02525 0.89 -0.0 578,203 - LRK53_RS02525 0.89 -1.0 578,203 - LRK53_RS02525 0.89 +3.3 578,259 + +1.4 578,259 + -0.7 578,259 + +0.1 578,294 + -0.0 578,294 + -0.9 578,294 + -0.6 578,294 + -1.8 578,294 + +1.0 578,294 + -1.8 578,294 + +0.3 578,294 + -1.4 578,294 + +2.0 578,294 + -0.5 578,295 - -0.7 578,295 - +0.2 578,295 - +0.0 578,295 - -1.8 578,295 - -0.6 578,295 - -1.3 578,295 - -0.8 578,295 - +0.2 578,295 - -0.6 578,295 - +0.6 578,297 - -0.0 578,305 - -0.6 578,305 - -0.0 578,326 + -1.0 578,326 + -0.8 578,326 + -0.4 578,327 - -0.2 578,327 - -0.6 578,327 - -0.4 578,349 + -0.4 578,349 + -1.0 578,349 + +0.2 578,350 - -0.6 578,350 - +1.2 578,350 - +0.2 578,350 - +0.6 578,350 - -2.2 578,350 - +1.0 578,350 - +1.0 578,350 - +0.2 578,350 - -1.7 578,350 - +1.0 578,350 - -0.6 578,490 + LRK53_RS02530 0.12 +2.0 578,490 + LRK53_RS02530 0.12 -0.3 578,490 + LRK53_RS02530 0.12 -0.6 578,490 + LRK53_RS02530 0.12 -0.7 578,490 + LRK53_RS02530 0.12 -0.5 578,490 + LRK53_RS02530 0.12 -2.3 578,490 + LRK53_RS02530 0.12 +1.0 578,491 - LRK53_RS02530 0.13 +1.0 578,512 + LRK53_RS02530 0.23 -0.3 578,622 + LRK53_RS02530 0.79 -0.6 578,623 - LRK53_RS02530 0.79 -0.6 578,623 - LRK53_RS02530 0.79 -0.0 578,623 - LRK53_RS02530 0.79 +1.0 578,722 + +2.6 578,722 + -0.4 578,731 + -0.0 578,731 + -0.6 578,731 + -0.5 578,731 + -0.6 578,731 + -0.0 578,734 + +1.0 578,735 - -1.0 578,735 - -0.6 578,735 - +0.1 578,735 - -0.4 578,742 - -0.8 579,111 + LRK53_RS02535 0.43 -0.0 579,111 + LRK53_RS02535 0.43 +1.0 579,111 + LRK53_RS02535 0.43 +1.0 579,111 + LRK53_RS02535 0.43 -1.2 579,111 + LRK53_RS02535 0.43 +1.2 579,111 + LRK53_RS02535 0.43 -0.0 579,111 + LRK53_RS02535 0.43 -0.6 579,111 + LRK53_RS02535 0.43 -0.0 579,111 + LRK53_RS02535 0.43 +1.0 579,112 - LRK53_RS02535 0.43 -0.0 579,112 - LRK53_RS02535 0.43 -0.4 579,112 - LRK53_RS02535 0.43 -0.0 579,112 - LRK53_RS02535 0.43 +0.4 579,112 - LRK53_RS02535 0.43 -1.7 579,112 - LRK53_RS02535 0.43 -2.5 579,112 - LRK53_RS02535 0.43 +2.0 579,132 + LRK53_RS02535 0.46 -0.8 579,192 + LRK53_RS02535 0.53 +1.0 579,192 + LRK53_RS02535 0.53 -0.0 579,192 + LRK53_RS02535 0.53 -0.4 579,192 + LRK53_RS02535 0.53 +1.0 579,192 + LRK53_RS02535 0.53 -0.6 579,192 + LRK53_RS02535 0.53 -0.6 579,192 + LRK53_RS02535 0.53 +1.0 579,193 - LRK53_RS02535 0.53 -1.4 579,193 - LRK53_RS02535 0.53 +1.0 579,193 - LRK53_RS02535 0.53 -0.0 579,193 - LRK53_RS02535 0.53 -0.0 579,194 + LRK53_RS02535 0.53 -0.7 579,195 - LRK53_RS02535 0.53 +1.0 579,247 - LRK53_RS02535 0.60 -0.4 579,351 + LRK53_RS02535 0.73 -0.8 579,351 + LRK53_RS02535 0.73 -1.9 579,351 + LRK53_RS02535 0.73 +1.0 579,351 + LRK53_RS02535 0.73 -0.0 579,351 + LRK53_RS02535 0.73 -0.0 579,351 + LRK53_RS02535 0.73 -0.0 579,351 + LRK53_RS02535 0.73 -1.2 579,351 + LRK53_RS02535 0.73 -1.9 579,351 + LRK53_RS02535 0.73 -1.4 579,351 + LRK53_RS02535 0.73 +1.0 579,351 + LRK53_RS02535 0.73 -1.8 579,351 + LRK53_RS02535 0.73 -0.3 579,351 + LRK53_RS02535 0.73 -2.4 579,351 + LRK53_RS02535 0.73 +0.4 579,351 + LRK53_RS02535 0.73 -1.0 579,352 - LRK53_RS02535 0.73 +1.0 579,352 - LRK53_RS02535 0.73 -1.0 579,352 - LRK53_RS02535 0.73 -1.0 579,352 - LRK53_RS02535 0.73 +1.0 579,352 - LRK53_RS02535 0.73 -0.0 579,352 - LRK53_RS02535 0.73 -0.0 579,352 - LRK53_RS02535 0.73 -1.0 579,352 - LRK53_RS02535 0.73 +1.0 579,352 - LRK53_RS02535 0.73 -0.6 579,357 + LRK53_RS02535 0.73 -0.6 579,357 + LRK53_RS02535 0.73 -1.6 579,357 + LRK53_RS02535 0.73 +1.0 579,357 + LRK53_RS02535 0.73 +1.0 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 +2.0 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 -0.5 579,357 + LRK53_RS02535 0.73 -0.4 579,357 + LRK53_RS02535 0.73 -0.8 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 -0.0 579,357 + LRK53_RS02535 0.73 -0.6 579,358 - LRK53_RS02535 0.73 +1.6 579,358 - LRK53_RS02535 0.73 -0.0 579,358 - LRK53_RS02535 0.73 -1.6 579,358 - LRK53_RS02535 0.73 -0.6 579,358 - LRK53_RS02535 0.73 -0.2 579,358 - LRK53_RS02535 0.73 +0.4 579,358 - LRK53_RS02535 0.73 -0.0 579,358 - LRK53_RS02535 0.73 +1.0 579,358 - LRK53_RS02535 0.73 -0.4 579,358 - LRK53_RS02535 0.73 -1.6 579,423 + LRK53_RS02535 0.81 -0.0 579,423 + LRK53_RS02535 0.81 -2.5 579,423 + LRK53_RS02535 0.81 -1.4 579,423 + LRK53_RS02535 0.81 -0.6 579,423 + LRK53_RS02535 0.81 -0.6 579,423 + LRK53_RS02535 0.81 -1.4 579,423 + LRK53_RS02535 0.81 -0.5 579,424 - LRK53_RS02535 0.82 -2.0 579,424 - LRK53_RS02535 0.82 +2.6 579,424 - LRK53_RS02535 0.82 -1.6 579,424 - LRK53_RS02535 0.82 +1.0 579,424 - LRK53_RS02535 0.82 -0.4 579,424 - LRK53_RS02535 0.82 -1.4 579,424 - LRK53_RS02535 0.82 +0.4 579,424 - LRK53_RS02535 0.82 -3.0 579,424 - LRK53_RS02535 0.82 -1.4 579,424 - LRK53_RS02535 0.82 -1.0 579,424 - LRK53_RS02535 0.82 -0.0 579,493 + -1.8 579,494 - -1.6 579,494 - -0.0 579,494 - -1.0 579,494 - -0.6 579,561 + -0.0 579,561 + -0.8 579,561 + -0.0 579,562 - +1.0 579,562 - +1.0 579,562 - +0.5 579,562 - +1.0 579,562 - +1.0 579,570 + -2.0 579,570 + -1.2 579,570 + -1.0 579,570 + +1.3 579,570 + +0.8 579,570 + -0.0 579,570 + +0.3 579,571 - -0.0 579,571 - +0.2 579,571 - +1.0 579,571 - -0.2 579,571 - -0.4 579,571 - +2.8 579,617 + -1.5 579,618 - +0.2 579,634 + -1.4 579,634 + -0.7 579,635 - -0.4 579,635 - +2.3 580,310 + -1.2 580,335 + +0.7 580,336 - -0.6 580,336 - -0.4 580,336 - -1.4 580,336 - +0.4
Or see this region's nucleotide sequence