Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02325 and LRK53_RS02330 are separated by 13 nucleotides LRK53_RS02330 and LRK53_RS02335 are separated by 112 nucleotides LRK53_RS02335 and LRK53_RS02340 overlap by 23 nucleotides LRK53_RS02340 and LRK53_RS02345 overlap by 8 nucleotides
LRK53_RS02325: LRK53_RS02325 - diaminopimelate epimerase, at 536,137 to 536,982
_RS02325
LRK53_RS02330: LRK53_RS02330 - lipoprotein, at 536,996 to 537,175
_RS02330
LRK53_RS02335: LRK53_RS02335 - hypothetical protein, at 537,288 to 537,977
_RS02335
LRK53_RS02340: LRK53_RS02340 - isopentenyl-diphosphate Delta-isomerase, at 537,955 to 538,542
_RS02340
LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874
_RS02345
Position (kb) 537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.203 kb on + strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.204 kb on - strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.205 kb on + strand at 537.206 kb on - strand at 537.206 kb on - strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.253 kb on + strand at 537.683 kb on - strand, within LRK53_RS02335 at 537.683 kb on - strand, within LRK53_RS02335 at 537.813 kb on + strand, within LRK53_RS02335 at 537.888 kb on + strand, within LRK53_RS02335 at 538.151 kb on + strand, within LRK53_RS02340 at 538.151 kb on + strand, within LRK53_RS02340 at 538.151 kb on + strand, within LRK53_RS02340 at 538.152 kb on - strand, within LRK53_RS02340 at 538.152 kb on - strand, within LRK53_RS02340 at 538.202 kb on + strand, within LRK53_RS02340 at 538.203 kb on - strand, within LRK53_RS02340 at 538.220 kb on + strand, within LRK53_RS02340 at 538.221 kb on - strand, within LRK53_RS02340 at 538.221 kb on - strand, within LRK53_RS02340 at 538.564 kb on - strand at 538.623 kb on - strand at 538.875 kb on - strand, within LRK53_RS02345
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 537,203 + +0.5 537,203 + -1.0 537,203 + -2.9 537,203 + +0.8 537,203 + -0.9 537,203 + -1.0 537,203 + -0.2 537,203 + -1.8 537,203 + -1.1 537,203 + -2.2 537,203 + +1.0 537,203 + +2.0 537,203 + +1.0 537,203 + -1.7 537,203 + +0.2 537,203 + -0.4 537,203 + -1.0 537,203 + -1.0 537,203 + +0.6 537,203 + +1.6 537,203 + -0.2 537,204 - +1.0 537,204 - -0.6 537,204 - -0.0 537,204 - -0.5 537,204 - -0.6 537,204 - -0.4 537,204 - -1.1 537,204 - -1.6 537,205 + -1.0 537,205 + -1.3 537,205 + +0.4 537,205 + -0.6 537,205 + -1.0 537,205 + -1.0 537,206 - -0.0 537,206 - +1.0 537,253 + -1.6 537,253 + -0.3 537,253 + -1.0 537,253 + +1.0 537,253 + +1.0 537,683 - LRK53_RS02335 0.57 +1.0 537,683 - LRK53_RS02335 0.57 -1.8 537,813 + LRK53_RS02335 0.76 -0.4 537,888 + LRK53_RS02335 0.87 -0.6 538,151 + LRK53_RS02340 0.33 -0.1 538,151 + LRK53_RS02340 0.33 -0.0 538,151 + LRK53_RS02340 0.33 -0.3 538,152 - LRK53_RS02340 0.34 -1.8 538,152 - LRK53_RS02340 0.34 -0.0 538,202 + LRK53_RS02340 0.42 +0.4 538,203 - LRK53_RS02340 0.42 -0.6 538,220 + LRK53_RS02340 0.45 -0.4 538,221 - LRK53_RS02340 0.45 -0.3 538,221 - LRK53_RS02340 0.45 -1.4 538,564 - +1.0 538,623 - -0.6 538,875 - LRK53_RS02345 0.15 +1.0
Or see this region's nucleotide sequence