Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00980 and LRK53_RS00985 are separated by 126 nucleotides LRK53_RS00985 and LRK53_RS00990 are separated by 90 nucleotides LRK53_RS00990 and LRK53_RS00995 are separated by 132 nucleotides
LRK53_RS00980: LRK53_RS00980 - hypothetical protein, at 244,977 to 245,717
_RS00980
LRK53_RS00985: LRK53_RS00985 - hypothetical protein, at 245,844 to 246,236
_RS00985
LRK53_RS00990: LRK53_RS00990 - hypothetical protein, at 246,327 to 246,944
_RS00990
LRK53_RS00995: LRK53_RS00995 - hypothetical protein, at 247,077 to 247,523
_RS00995
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.859 kb on + strand at 244.859 kb on + strand at 244.859 kb on + strand at 244.859 kb on + strand at 244.860 kb on - strand at 244.860 kb on - strand at 244.864 kb on + strand at 244.864 kb on + strand at 244.864 kb on + strand at 244.864 kb on + strand at 244.865 kb on - strand at 244.865 kb on - strand at 244.865 kb on - strand at 244.876 kb on + strand at 244.876 kb on + strand at 244.876 kb on + strand at 245.052 kb on + strand, within LRK53_RS00980 at 245.052 kb on + strand, within LRK53_RS00980 at 245.053 kb on - strand, within LRK53_RS00980 at 245.142 kb on - strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.207 kb on + strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.208 kb on - strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.211 kb on + strand, within LRK53_RS00980 at 245.212 kb on - strand, within LRK53_RS00980 at 245.212 kb on - strand, within LRK53_RS00980 at 245.212 kb on - strand, within LRK53_RS00980 at 245.212 kb on - strand, within LRK53_RS00980 at 245.212 kb on - strand, within LRK53_RS00980 at 245.259 kb on - strand, within LRK53_RS00980 at 245.259 kb on - strand, within LRK53_RS00980 at 245.259 kb on - strand, within LRK53_RS00980 at 245.259 kb on - strand, within LRK53_RS00980 at 245.334 kb on - strand, within LRK53_RS00980 at 245.402 kb on - strand, within LRK53_RS00980 at 245.468 kb on + strand, within LRK53_RS00980 at 245.469 kb on - strand, within LRK53_RS00980 at 245.469 kb on - strand, within LRK53_RS00980 at 245.469 kb on - strand, within LRK53_RS00980 at 245.486 kb on + strand, within LRK53_RS00980 at 245.501 kb on + strand, within LRK53_RS00980 at 245.502 kb on - strand, within LRK53_RS00980 at 245.502 kb on - strand, within LRK53_RS00980 at 245.513 kb on + strand, within LRK53_RS00980 at 245.513 kb on + strand, within LRK53_RS00980 at 245.513 kb on + strand, within LRK53_RS00980 at 245.513 kb on + strand, within LRK53_RS00980 at 245.514 kb on - strand, within LRK53_RS00980 at 245.514 kb on - strand, within LRK53_RS00980 at 245.567 kb on - strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.611 kb on + strand, within LRK53_RS00980 at 245.612 kb on - strand, within LRK53_RS00980 at 245.612 kb on - strand, within LRK53_RS00980 at 245.698 kb on + strand at 245.711 kb on + strand at 245.712 kb on - strand at 245.712 kb on - strand at 245.715 kb on + strand at 245.716 kb on - strand at 245.726 kb on - strand at 245.749 kb on + strand at 245.750 kb on - strand at 245.750 kb on - strand at 245.750 kb on - strand at 245.785 kb on + strand at 245.785 kb on + strand at 245.792 kb on + strand at 245.792 kb on + strand at 245.793 kb on - strand at 245.793 kb on - strand at 245.793 kb on - strand at 245.811 kb on + strand at 245.812 kb on - strand at 245.822 kb on + strand at 245.984 kb on - strand, within LRK53_RS00985 at 246.033 kb on - strand, within LRK53_RS00985 at 246.033 kb on - strand, within LRK53_RS00985 at 246.069 kb on - strand, within LRK53_RS00985 at 246.069 kb on - strand, within LRK53_RS00985 at 246.083 kb on + strand, within LRK53_RS00985 at 246.084 kb on - strand, within LRK53_RS00985 at 246.105 kb on + strand, within LRK53_RS00985 at 246.131 kb on + strand, within LRK53_RS00985 at 246.131 kb on + strand, within LRK53_RS00985 at 246.131 kb on + strand, within LRK53_RS00985 at 246.145 kb on + strand, within LRK53_RS00985 at 246.145 kb on + strand, within LRK53_RS00985 at 246.145 kb on + strand, within LRK53_RS00985 at 246.146 kb on - strand, within LRK53_RS00985 at 246.203 kb on - strand at 246.223 kb on + strand at 246.223 kb on + strand at 246.224 kb on - strand at 246.241 kb on + strand at 246.242 kb on - strand at 246.242 kb on - strand at 246.242 kb on - strand at 246.284 kb on + strand at 246.285 kb on - strand at 246.285 kb on - strand at 246.285 kb on - strand at 246.312 kb on + strand at 246.312 kb on + strand at 246.338 kb on + strand at 246.338 kb on + strand at 246.338 kb on + strand at 246.338 kb on + strand at 246.338 kb on + strand at 246.339 kb on - strand at 246.339 kb on - strand at 246.340 kb on + strand at 246.341 kb on - strand at 246.341 kb on - strand at 246.341 kb on - strand at 246.341 kb on - strand at 246.350 kb on + strand at 246.350 kb on + strand at 246.350 kb on + strand at 246.351 kb on - strand at 246.467 kb on + strand, within LRK53_RS00990 at 246.467 kb on + strand, within LRK53_RS00990 at 246.467 kb on + strand, within LRK53_RS00990 at 246.467 kb on + strand, within LRK53_RS00990 at 246.467 kb on + strand, within LRK53_RS00990 at 246.468 kb on - strand, within LRK53_RS00990 at 246.468 kb on - strand, within LRK53_RS00990 at 246.468 kb on - strand, within LRK53_RS00990 at 246.468 kb on - strand, within LRK53_RS00990 at 246.468 kb on - strand, within LRK53_RS00990 at 246.471 kb on + strand, within LRK53_RS00990 at 246.471 kb on + strand, within LRK53_RS00990 at 246.471 kb on + strand, within LRK53_RS00990 at 246.471 kb on + strand, within LRK53_RS00990 at 246.471 kb on + strand, within LRK53_RS00990 at 246.472 kb on - strand, within LRK53_RS00990 at 246.544 kb on + strand, within LRK53_RS00990 at 246.545 kb on - strand, within LRK53_RS00990 at 246.576 kb on + strand, within LRK53_RS00990 at 246.576 kb on + strand, within LRK53_RS00990 at 246.576 kb on + strand, within LRK53_RS00990 at 246.577 kb on - strand, within LRK53_RS00990 at 246.577 kb on - strand, within LRK53_RS00990 at 246.577 kb on - strand, within LRK53_RS00990 at 246.577 kb on - strand, within LRK53_RS00990 at 246.623 kb on + strand, within LRK53_RS00990 at 246.634 kb on + strand, within LRK53_RS00990 at 246.635 kb on - strand, within LRK53_RS00990 at 246.641 kb on + strand, within LRK53_RS00990 at 246.662 kb on - strand, within LRK53_RS00990 at 246.681 kb on + strand, within LRK53_RS00990 at 246.700 kb on + strand, within LRK53_RS00990 at 246.706 kb on + strand, within LRK53_RS00990 at 246.707 kb on - strand, within LRK53_RS00990 at 246.744 kb on - strand, within LRK53_RS00990 at 246.744 kb on - strand, within LRK53_RS00990 at 246.749 kb on + strand, within LRK53_RS00990 at 246.818 kb on - strand, within LRK53_RS00990 at 246.841 kb on + strand, within LRK53_RS00990 at 246.841 kb on + strand, within LRK53_RS00990 at 246.842 kb on - strand, within LRK53_RS00990 at 246.842 kb on - strand, within LRK53_RS00990 at 246.865 kb on + strand, within LRK53_RS00990 at 246.874 kb on + strand, within LRK53_RS00990 at 246.875 kb on - strand, within LRK53_RS00990 at 246.894 kb on + strand at 246.894 kb on + strand at 246.894 kb on + strand at 246.894 kb on + strand at 246.894 kb on + strand at 246.895 kb on - strand at 246.895 kb on - strand at 246.895 kb on - strand at 246.901 kb on + strand at 246.956 kb on + strand at 246.956 kb on + strand at 246.993 kb on - strand at 246.993 kb on - strand at 246.993 kb on - strand at 246.998 kb on - strand at 246.998 kb on - strand at 247.003 kb on + strand at 247.003 kb on + strand at 247.007 kb on + strand at 247.007 kb on + strand at 247.007 kb on + strand at 247.007 kb on + strand at 247.007 kb on + strand at 247.007 kb on + strand at 247.008 kb on - strand at 247.008 kb on - strand at 247.008 kb on - strand at 247.008 kb on - strand at 247.032 kb on - strand at 247.032 kb on - strand at 247.032 kb on - strand at 247.032 kb on - strand at 247.076 kb on + strand at 247.076 kb on + strand at 247.076 kb on + strand at 247.077 kb on - strand at 247.077 kb on - strand at 247.117 kb on + strand at 247.118 kb on - strand at 247.153 kb on + strand, within LRK53_RS00995 at 247.153 kb on + strand, within LRK53_RS00995 at 247.155 kb on + strand, within LRK53_RS00995 at 247.155 kb on + strand, within LRK53_RS00995 at 247.156 kb on - strand, within LRK53_RS00995 at 247.156 kb on - strand, within LRK53_RS00995 at 247.156 kb on - strand, within LRK53_RS00995 at 247.156 kb on - strand, within LRK53_RS00995 at 247.156 kb on - strand, within LRK53_RS00995 at 247.159 kb on + strand, within LRK53_RS00995 at 247.176 kb on + strand, within LRK53_RS00995 at 247.177 kb on - strand, within LRK53_RS00995 at 247.181 kb on - strand, within LRK53_RS00995 at 247.230 kb on + strand, within LRK53_RS00995 at 247.230 kb on + strand, within LRK53_RS00995 at 247.231 kb on - strand, within LRK53_RS00995
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 244,859 + +1.0 244,859 + -0.3 244,859 + -0.5 244,859 + +1.0 244,860 - -0.6 244,860 - -1.3 244,864 + +0.6 244,864 + -1.0 244,864 + -1.1 244,864 + -2.1 244,865 - -0.8 244,865 - +0.0 244,865 - -2.9 244,876 + -0.6 244,876 + -1.0 244,876 + -0.3 245,052 + LRK53_RS00980 0.10 +1.0 245,052 + LRK53_RS00980 0.10 -1.4 245,053 - LRK53_RS00980 0.10 -0.6 245,142 - LRK53_RS00980 0.22 -1.0 245,207 + LRK53_RS00980 0.31 -1.4 245,207 + LRK53_RS00980 0.31 +0.8 245,207 + LRK53_RS00980 0.31 -0.4 245,207 + LRK53_RS00980 0.31 -0.4 245,207 + LRK53_RS00980 0.31 -1.3 245,207 + LRK53_RS00980 0.31 -1.0 245,207 + LRK53_RS00980 0.31 +0.4 245,207 + LRK53_RS00980 0.31 -2.6 245,207 + LRK53_RS00980 0.31 -0.4 245,207 + LRK53_RS00980 0.31 -0.8 245,208 - LRK53_RS00980 0.31 +0.0 245,208 - LRK53_RS00980 0.31 -2.1 245,208 - LRK53_RS00980 0.31 -1.0 245,208 - LRK53_RS00980 0.31 +1.3 245,208 - LRK53_RS00980 0.31 +0.0 245,208 - LRK53_RS00980 0.31 +0.0 245,208 - LRK53_RS00980 0.31 -0.8 245,208 - LRK53_RS00980 0.31 -0.6 245,208 - LRK53_RS00980 0.31 +0.2 245,211 + LRK53_RS00980 0.32 +0.3 245,211 + LRK53_RS00980 0.32 -0.2 245,211 + LRK53_RS00980 0.32 -0.3 245,211 + LRK53_RS00980 0.32 +1.0 245,211 + LRK53_RS00980 0.32 +1.0 245,211 + LRK53_RS00980 0.32 -0.4 245,212 - LRK53_RS00980 0.32 -0.3 245,212 - LRK53_RS00980 0.32 -1.1 245,212 - LRK53_RS00980 0.32 +0.3 245,212 - LRK53_RS00980 0.32 -1.0 245,212 - LRK53_RS00980 0.32 -1.6 245,259 - LRK53_RS00980 0.38 -0.4 245,259 - LRK53_RS00980 0.38 -1.8 245,259 - LRK53_RS00980 0.38 +2.0 245,259 - LRK53_RS00980 0.38 -0.6 245,334 - LRK53_RS00980 0.48 -0.3 245,402 - LRK53_RS00980 0.57 +0.6 245,468 + LRK53_RS00980 0.66 -1.0 245,469 - LRK53_RS00980 0.66 -1.3 245,469 - LRK53_RS00980 0.66 -0.7 245,469 - LRK53_RS00980 0.66 -1.1 245,486 + LRK53_RS00980 0.69 -0.9 245,501 + LRK53_RS00980 0.71 -1.1 245,502 - LRK53_RS00980 0.71 -1.0 245,502 - LRK53_RS00980 0.71 +0.6 245,513 + LRK53_RS00980 0.72 +0.5 245,513 + LRK53_RS00980 0.72 -0.6 245,513 + LRK53_RS00980 0.72 -1.3 245,513 + LRK53_RS00980 0.72 -0.6 245,514 - LRK53_RS00980 0.72 +1.0 245,514 - LRK53_RS00980 0.72 -1.8 245,567 - LRK53_RS00980 0.80 +1.0 245,611 + LRK53_RS00980 0.86 -2.0 245,611 + LRK53_RS00980 0.86 -1.0 245,611 + LRK53_RS00980 0.86 -1.1 245,611 + LRK53_RS00980 0.86 +0.8 245,611 + LRK53_RS00980 0.86 -0.6 245,611 + LRK53_RS00980 0.86 +0.0 245,612 - LRK53_RS00980 0.86 -1.0 245,612 - LRK53_RS00980 0.86 -2.4 245,698 + -0.8 245,711 + -0.6 245,712 - -0.3 245,712 - -1.8 245,715 + -0.3 245,716 - -0.6 245,726 - -1.4 245,749 + -0.6 245,750 - -1.0 245,750 - -0.4 245,750 - +0.0 245,785 + -1.1 245,785 + -0.6 245,792 + +0.0 245,792 + -1.6 245,793 - -1.0 245,793 - +0.0 245,793 - +0.0 245,811 + -1.2 245,812 - +1.0 245,822 + -0.9 245,984 - LRK53_RS00985 0.36 -1.5 246,033 - LRK53_RS00985 0.48 +0.0 246,033 - LRK53_RS00985 0.48 -0.7 246,069 - LRK53_RS00985 0.57 -0.6 246,069 - LRK53_RS00985 0.57 +0.6 246,083 + LRK53_RS00985 0.61 -3.3 246,084 - LRK53_RS00985 0.61 -0.6 246,105 + LRK53_RS00985 0.66 -1.3 246,131 + LRK53_RS00985 0.73 +0.3 246,131 + LRK53_RS00985 0.73 +1.0 246,131 + LRK53_RS00985 0.73 -1.0 246,145 + LRK53_RS00985 0.77 +0.4 246,145 + LRK53_RS00985 0.77 -0.6 246,145 + LRK53_RS00985 0.77 -0.6 246,146 - LRK53_RS00985 0.77 -1.8 246,203 - -1.4 246,223 + +1.0 246,223 + -1.9 246,224 - -0.3 246,241 + +0.0 246,242 - +0.4 246,242 - +0.3 246,242 - +0.4 246,284 + -1.6 246,285 - +0.4 246,285 - -1.0 246,285 - +0.4 246,312 + +0.0 246,312 + -0.6 246,338 + -0.3 246,338 + -0.6 246,338 + -0.4 246,338 + -1.3 246,338 + +0.0 246,339 - +0.0 246,339 - +0.3 246,340 + +0.3 246,341 - -2.1 246,341 - -0.1 246,341 - -0.6 246,341 - -1.3 246,350 + -0.4 246,350 + +0.4 246,350 + -0.1 246,351 - +0.0 246,467 + LRK53_RS00990 0.23 +0.0 246,467 + LRK53_RS00990 0.23 +0.0 246,467 + LRK53_RS00990 0.23 -0.7 246,467 + LRK53_RS00990 0.23 -0.1 246,467 + LRK53_RS00990 0.23 -0.3 246,468 - LRK53_RS00990 0.23 -0.7 246,468 - LRK53_RS00990 0.23 +0.0 246,468 - LRK53_RS00990 0.23 +2.6 246,468 - LRK53_RS00990 0.23 -2.0 246,468 - LRK53_RS00990 0.23 -0.6 246,471 + LRK53_RS00990 0.23 -0.4 246,471 + LRK53_RS00990 0.23 +1.0 246,471 + LRK53_RS00990 0.23 -1.0 246,471 + LRK53_RS00990 0.23 -1.9 246,471 + LRK53_RS00990 0.23 +1.6 246,472 - LRK53_RS00990 0.23 -0.4 246,544 + LRK53_RS00990 0.35 -0.5 246,545 - LRK53_RS00990 0.35 -0.6 246,576 + LRK53_RS00990 0.40 +0.0 246,576 + LRK53_RS00990 0.40 -0.6 246,576 + LRK53_RS00990 0.40 -2.4 246,577 - LRK53_RS00990 0.40 +0.3 246,577 - LRK53_RS00990 0.40 -0.3 246,577 - LRK53_RS00990 0.40 -1.8 246,577 - LRK53_RS00990 0.40 -0.0 246,623 + LRK53_RS00990 0.48 -1.1 246,634 + LRK53_RS00990 0.50 +0.0 246,635 - LRK53_RS00990 0.50 +0.0 246,641 + LRK53_RS00990 0.51 -1.3 246,662 - LRK53_RS00990 0.54 +0.4 246,681 + LRK53_RS00990 0.57 -1.3 246,700 + LRK53_RS00990 0.60 -1.3 246,706 + LRK53_RS00990 0.61 -0.3 246,707 - LRK53_RS00990 0.61 -0.4 246,744 - LRK53_RS00990 0.67 -0.9 246,744 - LRK53_RS00990 0.67 -0.3 246,749 + LRK53_RS00990 0.68 +0.0 246,818 - LRK53_RS00990 0.79 -0.6 246,841 + LRK53_RS00990 0.83 -0.6 246,841 + LRK53_RS00990 0.83 -0.6 246,842 - LRK53_RS00990 0.83 -0.8 246,842 - LRK53_RS00990 0.83 +0.4 246,865 + LRK53_RS00990 0.87 -0.8 246,874 + LRK53_RS00990 0.89 +1.2 246,875 - LRK53_RS00990 0.89 -0.2 246,894 + -1.3 246,894 + +0.0 246,894 + -1.8 246,894 + -0.6 246,894 + +0.6 246,895 - -1.0 246,895 - -1.3 246,895 - -0.8 246,901 + -1.0 246,956 + -0.6 246,956 + +0.4 246,993 - -1.7 246,993 - -0.3 246,993 - -0.1 246,998 - +0.1 246,998 - -0.8 247,003 + -0.8 247,003 + -0.4 247,007 + -1.0 247,007 + -0.6 247,007 + +0.4 247,007 + -1.0 247,007 + -1.3 247,007 + -0.8 247,008 - -0.6 247,008 - +0.0 247,008 - -0.6 247,008 - +0.3 247,032 - -1.8 247,032 - +0.6 247,032 - +0.3 247,032 - -2.1 247,076 + +0.2 247,076 + -2.4 247,076 + -1.6 247,077 - +1.0 247,077 - +0.0 247,117 + +1.0 247,118 - -1.0 247,153 + LRK53_RS00995 0.17 -0.8 247,153 + LRK53_RS00995 0.17 -0.3 247,155 + LRK53_RS00995 0.17 +0.0 247,155 + LRK53_RS00995 0.17 -0.9 247,156 - LRK53_RS00995 0.18 -2.6 247,156 - LRK53_RS00995 0.18 +0.3 247,156 - LRK53_RS00995 0.18 -1.3 247,156 - LRK53_RS00995 0.18 -1.8 247,156 - LRK53_RS00995 0.18 -2.0 247,159 + LRK53_RS00995 0.18 +0.0 247,176 + LRK53_RS00995 0.22 -2.2 247,177 - LRK53_RS00995 0.22 -1.3 247,181 - LRK53_RS00995 0.23 +0.4 247,230 + LRK53_RS00995 0.34 -0.1 247,230 + LRK53_RS00995 0.34 -0.5 247,231 - LRK53_RS00995 0.34 +1.0
Or see this region's nucleotide sequence