Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00755 and LRK53_RS00760 overlap by 4 nucleotides LRK53_RS00760 and LRK53_RS00765 are separated by 29 nucleotides LRK53_RS00765 and LRK53_RS00770 are separated by 72 nucleotides
LRK53_RS00755: LRK53_RS00755 - efflux RND transporter periplasmic adaptor subunit, at 178,708 to 179,817
_RS00755
LRK53_RS00760: LRK53_RS00760 - DUF302 domain-containing protein, at 179,814 to 180,197
_RS00760
LRK53_RS00765: LRK53_RS00765 - DUF2892 domain-containing protein, at 180,227 to 180,433
_RS00765
LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807
_RS00770
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 178.899 kb on - strand, within LRK53_RS00755 at 179.306 kb on + strand, within LRK53_RS00755 at 179.306 kb on + strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.426 kb on + strand, within LRK53_RS00755 at 179.426 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.582 kb on + strand, within LRK53_RS00755 at 179.583 kb on - strand, within LRK53_RS00755 at 179.953 kb on + strand, within LRK53_RS00760 at 179.953 kb on + strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.194 kb on + strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.229 kb on - strand at 180.427 kb on + strand at 180.585 kb on + strand at 180.585 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.766 kb on + strand, within LRK53_RS00770 at 180.766 kb on + strand, within LRK53_RS00770 at 180.921 kb on + strand, within LRK53_RS00770 at 180.922 kb on - strand, within LRK53_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 178,899 - LRK53_RS00755 0.17 +1.0 179,306 + LRK53_RS00755 0.54 -0.6 179,306 + LRK53_RS00755 0.54 -0.6 179,307 - LRK53_RS00755 0.54 +0.0 179,307 - LRK53_RS00755 0.54 +1.6 179,307 - LRK53_RS00755 0.54 +0.6 179,307 - LRK53_RS00755 0.54 +1.0 179,307 - LRK53_RS00755 0.54 +1.0 179,307 - LRK53_RS00755 0.54 -1.3 179,414 + LRK53_RS00755 0.64 -0.4 179,414 + LRK53_RS00755 0.64 +0.0 179,414 + LRK53_RS00755 0.64 +1.0 179,414 + LRK53_RS00755 0.64 -1.0 179,414 + LRK53_RS00755 0.64 -1.0 179,415 - LRK53_RS00755 0.64 -0.4 179,415 - LRK53_RS00755 0.64 +0.5 179,415 - LRK53_RS00755 0.64 -1.6 179,426 + LRK53_RS00755 0.65 +1.0 179,426 + LRK53_RS00755 0.65 -2.0 179,468 + LRK53_RS00755 0.68 +0.0 179,468 + LRK53_RS00755 0.68 +0.0 179,468 + LRK53_RS00755 0.68 -1.3 179,468 + LRK53_RS00755 0.68 +0.0 179,468 + LRK53_RS00755 0.68 -0.6 179,468 + LRK53_RS00755 0.68 +0.4 179,469 - LRK53_RS00755 0.69 -0.9 179,469 - LRK53_RS00755 0.69 -1.2 179,582 + LRK53_RS00755 0.79 +0.4 179,583 - LRK53_RS00755 0.79 +0.8 179,953 + LRK53_RS00760 0.36 +2.6 179,953 + LRK53_RS00760 0.36 +0.0 179,954 - LRK53_RS00760 0.36 +1.0 179,954 - LRK53_RS00760 0.36 -1.0 179,954 - LRK53_RS00760 0.36 -1.0 180,190 + -0.8 180,190 + -0.6 180,190 + -1.0 180,190 + -2.0 180,190 + +1.8 180,190 + -0.2 180,190 + -1.2 180,190 + +0.8 180,190 + -1.1 180,191 - +0.4 180,191 - -2.2 180,191 - -0.4 180,191 - +1.6 180,191 - +2.8 180,191 - +1.5 180,191 - -1.7 180,191 - +0.4 180,193 + -0.3 180,193 + -1.4 180,193 + -0.6 180,193 + -1.0 180,193 + +0.4 180,193 + -0.2 180,193 + +0.0 180,193 + +0.4 180,193 + +0.6 180,193 + -0.9 180,193 + -1.8 180,193 + -2.4 180,193 + -1.3 180,193 + +1.0 180,193 + -1.0 180,193 + -1.3 180,193 + +2.0 180,193 + -1.5 180,193 + +2.0 180,193 + -0.7 180,193 + -0.4 180,193 + -1.1 180,193 + -0.6 180,193 + -0.4 180,193 + -1.0 180,193 + +0.0 180,193 + -0.4 180,193 + +0.8 180,193 + +0.0 180,193 + -1.1 180,194 + -1.0 180,194 - -1.0 180,194 - -1.0 180,194 - +0.0 180,194 - -1.1 180,194 - -0.6 180,194 - +0.0 180,194 - +1.0 180,194 - +0.0 180,194 - -0.1 180,194 - +0.4 180,194 - +0.3 180,194 - +0.0 180,194 - +1.0 180,194 - +0.9 180,194 - -1.2 180,194 - +2.0 180,194 - +2.0 180,194 - -0.3 180,194 - +0.0 180,194 - +0.2 180,194 - -0.8 180,194 - -2.0 180,194 - -0.2 180,194 - +0.1 180,194 - -0.6 180,194 - -1.1 180,229 - +1.0 180,427 + -2.3 180,585 + +0.0 180,585 + +0.1 180,627 + -1.0 180,627 + -0.6 180,627 + +0.4 180,627 + +0.0 180,627 + +1.6 180,627 + -0.1 180,627 + -1.0 180,627 + -1.3 180,627 + -1.1 180,628 - +1.0 180,628 - +0.0 180,628 - +1.0 180,628 - -0.8 180,628 - -0.2 180,628 - -2.1 180,766 + LRK53_RS00770 0.20 +2.0 180,766 + LRK53_RS00770 0.20 +1.0 180,921 + LRK53_RS00770 0.32 -0.3 180,922 - LRK53_RS00770 0.32 +0.0
Or see this region's nucleotide sequence