Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00400 and LRK53_RS00405 are separated by 1 nucleotides LRK53_RS00405 and LRK53_RS00410 are separated by 3 nucleotides LRK53_RS00410 and LRK53_RS00415 are separated by 112 nucleotides LRK53_RS00415 and LRK53_RS00420 overlap by 4 nucleotides
LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839
_RS00400
LRK53_RS00405: LRK53_RS00405 - trimeric intracellular cation channel family protein, at 91,841 to 92,536
_RS00405
LRK53_RS00410: LRK53_RS00410 - M20 family metallopeptidase, at 92,540 to 93,814
_RS00410
LRK53_RS00415: LRK53_RS00415 - DsbA family protein, at 93,927 to 94,478
_RS00415
LRK53_RS00420: LRK53_RS00420 - redoxin domain-containing protein, at 94,475 to 94,987
_RS00420
Position (kb) 92
93
94 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.547 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.795 kb on + strand at 91.796 kb on - strand at 91.796 kb on - strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.826 kb on - strand at 91.826 kb on - strand at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.812 kb on - strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.970 kb on - strand, within LRK53_RS00410 at 93.037 kb on + strand, within LRK53_RS00410 at 93.232 kb on - strand, within LRK53_RS00410 at 93.523 kb on - strand, within LRK53_RS00410 at 93.649 kb on - strand, within LRK53_RS00410 at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.736 kb on - strand at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.994 kb on + strand, within LRK53_RS00415 at 93.994 kb on + strand, within LRK53_RS00415 at 94.006 kb on + strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.424 kb on + strand at 94.424 kb on + strand at 94.424 kb on + strand at 94.425 kb on - strand at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.665 kb on + strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 91,547 + LRK53_RS00400 0.76 +1.0 91,556 + LRK53_RS00400 0.77 -0.8 91,556 + LRK53_RS00400 0.77 -0.6 91,556 + LRK53_RS00400 0.77 -1.2 91,556 + LRK53_RS00400 0.77 +1.0 91,557 - LRK53_RS00400 0.77 +1.0 91,557 - LRK53_RS00400 0.77 +1.0 91,557 - LRK53_RS00400 0.77 -0.3 91,557 - LRK53_RS00400 0.77 -0.6 91,557 - LRK53_RS00400 0.77 -2.0 91,557 - LRK53_RS00400 0.77 -0.5 91,557 - LRK53_RS00400 0.77 +0.3 91,557 - LRK53_RS00400 0.77 -0.6 91,557 - LRK53_RS00400 0.77 -0.6 91,795 + +0.4 91,796 - -1.0 91,796 - -0.6 91,825 + -0.1 91,825 + -1.8 91,825 + -1.6 91,826 - -0.3 91,826 - -0.8 92,052 + LRK53_RS00405 0.30 -1.0 92,052 + LRK53_RS00405 0.30 -0.2 92,052 + LRK53_RS00405 0.30 +2.6 92,053 - LRK53_RS00405 0.30 +0.4 92,053 - LRK53_RS00405 0.30 -2.4 92,053 - LRK53_RS00405 0.30 -2.9 92,685 + LRK53_RS00410 0.11 -1.2 92,685 + LRK53_RS00410 0.11 -0.2 92,685 + LRK53_RS00410 0.11 +0.0 92,685 + LRK53_RS00410 0.11 -2.6 92,685 + LRK53_RS00410 0.11 -0.6 92,686 - LRK53_RS00410 0.11 +0.0 92,686 - LRK53_RS00410 0.11 -0.3 92,686 - LRK53_RS00410 0.11 +2.0 92,686 - LRK53_RS00410 0.11 -0.6 92,686 - LRK53_RS00410 0.11 -2.6 92,686 - LRK53_RS00410 0.11 -2.3 92,686 - LRK53_RS00410 0.11 -0.3 92,686 - LRK53_RS00410 0.11 -1.2 92,811 + LRK53_RS00410 0.21 +0.0 92,811 + LRK53_RS00410 0.21 -1.8 92,811 + LRK53_RS00410 0.21 +1.0 92,811 + LRK53_RS00410 0.21 +1.0 92,812 - LRK53_RS00410 0.21 -2.2 92,871 + LRK53_RS00410 0.26 +0.0 92,871 + LRK53_RS00410 0.26 -0.2 92,871 + LRK53_RS00410 0.26 -0.6 92,871 + LRK53_RS00410 0.26 -1.0 92,871 + LRK53_RS00410 0.26 -0.4 92,871 + LRK53_RS00410 0.26 -0.6 92,871 + LRK53_RS00410 0.26 -0.6 92,871 + LRK53_RS00410 0.26 +0.0 92,872 - LRK53_RS00410 0.26 -1.1 92,872 - LRK53_RS00410 0.26 +0.0 92,872 - LRK53_RS00410 0.26 -0.6 92,872 - LRK53_RS00410 0.26 -1.2 92,872 - LRK53_RS00410 0.26 -0.6 92,872 - LRK53_RS00410 0.26 +0.4 92,872 - LRK53_RS00410 0.26 -2.2 92,969 + LRK53_RS00410 0.34 +2.0 92,969 + LRK53_RS00410 0.34 -0.6 92,969 + LRK53_RS00410 0.34 -1.0 92,970 - LRK53_RS00410 0.34 +1.0 93,037 + LRK53_RS00410 0.39 +0.4 93,232 - LRK53_RS00410 0.54 -0.6 93,523 - LRK53_RS00410 0.77 -0.3 93,649 - LRK53_RS00410 0.87 -1.0 93,735 + -1.3 93,735 + -0.2 93,735 + -0.4 93,735 + -2.3 93,735 + -0.4 93,736 - +0.0 93,988 + LRK53_RS00415 0.11 -0.8 93,988 + LRK53_RS00415 0.11 +0.6 93,988 + LRK53_RS00415 0.11 -2.4 93,988 + LRK53_RS00415 0.11 +0.0 93,988 + LRK53_RS00415 0.11 +1.0 93,989 - LRK53_RS00415 0.11 -1.0 93,989 - LRK53_RS00415 0.11 -0.9 93,989 - LRK53_RS00415 0.11 -0.3 93,989 - LRK53_RS00415 0.11 -0.6 93,989 - LRK53_RS00415 0.11 +1.2 93,989 - LRK53_RS00415 0.11 +1.0 93,989 - LRK53_RS00415 0.11 +0.0 93,989 - LRK53_RS00415 0.11 +0.0 93,994 + LRK53_RS00415 0.12 +0.0 93,994 + LRK53_RS00415 0.12 +1.0 94,006 + LRK53_RS00415 0.14 +0.3 94,007 - LRK53_RS00415 0.14 +0.0 94,007 - LRK53_RS00415 0.14 -0.6 94,007 - LRK53_RS00415 0.14 +0.4 94,186 + LRK53_RS00415 0.47 -0.6 94,186 + LRK53_RS00415 0.47 +0.0 94,187 - LRK53_RS00415 0.47 -1.6 94,187 - LRK53_RS00415 0.47 -0.6 94,261 + LRK53_RS00415 0.61 -0.6 94,261 + LRK53_RS00415 0.61 -1.2 94,261 + LRK53_RS00415 0.61 +2.0 94,261 + LRK53_RS00415 0.61 +0.4 94,262 - LRK53_RS00415 0.61 +0.4 94,262 - LRK53_RS00415 0.61 -0.8 94,262 - LRK53_RS00415 0.61 +0.0 94,424 + -0.2 94,424 + +0.4 94,424 + -0.4 94,425 - -1.0 94,593 + LRK53_RS00420 0.23 +0.6 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 +0.0 94,593 + LRK53_RS00420 0.23 -1.8 94,593 + LRK53_RS00420 0.23 -1.0 94,593 + LRK53_RS00420 0.23 -0.3 94,593 + LRK53_RS00420 0.23 +0.0 94,593 + LRK53_RS00420 0.23 -0.2 94,593 + LRK53_RS00420 0.23 -1.6 94,593 + LRK53_RS00420 0.23 -0.2 94,593 + LRK53_RS00420 0.23 -1.7 94,593 + LRK53_RS00420 0.23 -0.8 94,593 + LRK53_RS00420 0.23 -1.0 94,593 + LRK53_RS00420 0.23 -2.2 94,593 + LRK53_RS00420 0.23 +0.0 94,594 - LRK53_RS00420 0.23 -1.0 94,594 - LRK53_RS00420 0.23 +1.0 94,594 - LRK53_RS00420 0.23 -2.2 94,594 - LRK53_RS00420 0.23 -0.8 94,594 - LRK53_RS00420 0.23 +1.6 94,594 - LRK53_RS00420 0.23 +0.0 94,594 - LRK53_RS00420 0.23 -0.3 94,594 - LRK53_RS00420 0.23 +0.6 94,594 - LRK53_RS00420 0.23 -1.1 94,594 - LRK53_RS00420 0.23 +1.0 94,665 + LRK53_RS00420 0.37 -1.3 94,666 - LRK53_RS00420 0.37 +1.0 94,666 - LRK53_RS00420 0.37 +0.7
Or see this region's nucleotide sequence