Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00405

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00400 and LRK53_RS00405 are separated by 1 nucleotidesLRK53_RS00405 and LRK53_RS00410 are separated by 3 nucleotides LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839 _RS00400 LRK53_RS00405: LRK53_RS00405 - trimeric intracellular cation channel family protein, at 91,841 to 92,536 _RS00405 LRK53_RS00410: LRK53_RS00410 - M20 family metallopeptidase, at 92,540 to 93,814 _RS00410 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.893 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.094 kb on + strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.095 kb on - strand, within LRK53_RS00400at 91.262 kb on + strand, within LRK53_RS00400at 91.263 kb on - strand, within LRK53_RS00400at 91.263 kb on - strand, within LRK53_RS00400at 91.318 kb on + strand, within LRK53_RS00400at 91.386 kb on - strand, within LRK53_RS00400at 91.547 kb on + strand, within LRK53_RS00400at 91.556 kb on + strand, within LRK53_RS00400at 91.556 kb on + strand, within LRK53_RS00400at 91.556 kb on + strand, within LRK53_RS00400at 91.556 kb on + strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.557 kb on - strand, within LRK53_RS00400at 91.795 kb on + strandat 91.796 kb on - strandat 91.796 kb on - strandat 91.825 kb on + strandat 91.825 kb on + strandat 91.825 kb on + strandat 91.826 kb on - strandat 91.826 kb on - strandat 92.052 kb on + strand, within LRK53_RS00405at 92.052 kb on + strand, within LRK53_RS00405at 92.052 kb on + strand, within LRK53_RS00405at 92.053 kb on - strand, within LRK53_RS00405at 92.053 kb on - strand, within LRK53_RS00405at 92.053 kb on - strand, within LRK53_RS00405at 92.685 kb on + strand, within LRK53_RS00410at 92.685 kb on + strand, within LRK53_RS00410at 92.685 kb on + strand, within LRK53_RS00410at 92.685 kb on + strand, within LRK53_RS00410at 92.685 kb on + strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.686 kb on - strand, within LRK53_RS00410at 92.811 kb on + strand, within LRK53_RS00410at 92.811 kb on + strand, within LRK53_RS00410at 92.811 kb on + strand, within LRK53_RS00410at 92.811 kb on + strand, within LRK53_RS00410at 92.812 kb on - strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.871 kb on + strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.872 kb on - strand, within LRK53_RS00410at 92.969 kb on + strand, within LRK53_RS00410at 92.969 kb on + strand, within LRK53_RS00410at 92.969 kb on + strand, within LRK53_RS00410at 92.970 kb on - strand, within LRK53_RS00410at 93.037 kb on + strand, within LRK53_RS00410at 93.232 kb on - strand, within LRK53_RS00410at 93.523 kb on - strand, within LRK53_RS00410

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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90,893 + LRK53_RS00400 0.24 -0.4
91,094 + LRK53_RS00400 0.40 +1.0
91,094 + LRK53_RS00400 0.40 -1.0
91,094 + LRK53_RS00400 0.40 -1.3
91,094 + LRK53_RS00400 0.40 -1.0
91,094 + LRK53_RS00400 0.40 -0.5
91,094 + LRK53_RS00400 0.40 -1.7
91,095 - LRK53_RS00400 0.40 -1.0
91,095 - LRK53_RS00400 0.40 -1.0
91,095 - LRK53_RS00400 0.40 +0.1
91,262 + LRK53_RS00400 0.53 +0.0
91,263 - LRK53_RS00400 0.53 -0.2
91,263 - LRK53_RS00400 0.53 +0.0
91,318 + LRK53_RS00400 0.58 -1.2
91,386 - LRK53_RS00400 0.63 +0.0
91,547 + LRK53_RS00400 0.76 +1.0
91,556 + LRK53_RS00400 0.77 -0.8
91,556 + LRK53_RS00400 0.77 -0.6
91,556 + LRK53_RS00400 0.77 -1.2
91,556 + LRK53_RS00400 0.77 +1.0
91,557 - LRK53_RS00400 0.77 +1.0
91,557 - LRK53_RS00400 0.77 +1.0
91,557 - LRK53_RS00400 0.77 -0.3
91,557 - LRK53_RS00400 0.77 -0.6
91,557 - LRK53_RS00400 0.77 -2.0
91,557 - LRK53_RS00400 0.77 -0.5
91,557 - LRK53_RS00400 0.77 +0.3
91,557 - LRK53_RS00400 0.77 -0.6
91,557 - LRK53_RS00400 0.77 -0.6
91,795 + +0.4
91,796 - -1.0
91,796 - -0.6
91,825 + -0.1
91,825 + -1.8
91,825 + -1.6
91,826 - -0.3
91,826 - -0.8
92,052 + LRK53_RS00405 0.30 -1.0
92,052 + LRK53_RS00405 0.30 -0.2
92,052 + LRK53_RS00405 0.30 +2.6
92,053 - LRK53_RS00405 0.30 +0.4
92,053 - LRK53_RS00405 0.30 -2.4
92,053 - LRK53_RS00405 0.30 -2.9
92,685 + LRK53_RS00410 0.11 -1.2
92,685 + LRK53_RS00410 0.11 -0.2
92,685 + LRK53_RS00410 0.11 +0.0
92,685 + LRK53_RS00410 0.11 -2.6
92,685 + LRK53_RS00410 0.11 -0.6
92,686 - LRK53_RS00410 0.11 +0.0
92,686 - LRK53_RS00410 0.11 -0.3
92,686 - LRK53_RS00410 0.11 +2.0
92,686 - LRK53_RS00410 0.11 -0.6
92,686 - LRK53_RS00410 0.11 -2.6
92,686 - LRK53_RS00410 0.11 -2.3
92,686 - LRK53_RS00410 0.11 -0.3
92,686 - LRK53_RS00410 0.11 -1.2
92,811 + LRK53_RS00410 0.21 +0.0
92,811 + LRK53_RS00410 0.21 -1.8
92,811 + LRK53_RS00410 0.21 +1.0
92,811 + LRK53_RS00410 0.21 +1.0
92,812 - LRK53_RS00410 0.21 -2.2
92,871 + LRK53_RS00410 0.26 +0.0
92,871 + LRK53_RS00410 0.26 -0.2
92,871 + LRK53_RS00410 0.26 -0.6
92,871 + LRK53_RS00410 0.26 -1.0
92,871 + LRK53_RS00410 0.26 -0.4
92,871 + LRK53_RS00410 0.26 -0.6
92,871 + LRK53_RS00410 0.26 -0.6
92,871 + LRK53_RS00410 0.26 +0.0
92,872 - LRK53_RS00410 0.26 -1.1
92,872 - LRK53_RS00410 0.26 +0.0
92,872 - LRK53_RS00410 0.26 -0.6
92,872 - LRK53_RS00410 0.26 -1.2
92,872 - LRK53_RS00410 0.26 -0.6
92,872 - LRK53_RS00410 0.26 +0.4
92,872 - LRK53_RS00410 0.26 -2.2
92,969 + LRK53_RS00410 0.34 +2.0
92,969 + LRK53_RS00410 0.34 -0.6
92,969 + LRK53_RS00410 0.34 -1.0
92,970 - LRK53_RS00410 0.34 +1.0
93,037 + LRK53_RS00410 0.39 +0.4
93,232 - LRK53_RS00410 0.54 -0.6
93,523 - LRK53_RS00410 0.77 -0.3

Or see this region's nucleotide sequence