Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00215

Experiment: pH4.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00210 and LRK53_RS00215 are separated by 84 nucleotidesLRK53_RS00215 and LRK53_RS00220 are separated by 85 nucleotidesLRK53_RS00220 and LRK53_RS00225 overlap by 4 nucleotides LRK53_RS00210: LRK53_RS00210 - MFS transporter, at 52,105 to 53,394 _RS00210 LRK53_RS00215: LRK53_RS00215 - TetR/AcrR family transcriptional regulator, at 53,479 to 54,087 _RS00215 LRK53_RS00220: LRK53_RS00220 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 54,173 to 54,979 _RS00220 LRK53_RS00225: LRK53_RS00225 - alpha/beta fold hydrolase, at 54,976 to 55,995 _RS00225 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on + strand, within LRK53_RS00210at 52.579 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.580 kb on - strand, within LRK53_RS00210at 52.676 kb on + strand, within LRK53_RS00210at 52.676 kb on + strand, within LRK53_RS00210at 52.677 kb on - strand, within LRK53_RS00210at 52.677 kb on - strand, within LRK53_RS00210at 52.677 kb on - strand, within LRK53_RS00210at 52.677 kb on - strand, within LRK53_RS00210at 52.677 kb on - strand, within LRK53_RS00210at 52.828 kb on + strand, within LRK53_RS00210at 52.828 kb on + strand, within LRK53_RS00210at 52.828 kb on + strand, within LRK53_RS00210at 52.828 kb on + strand, within LRK53_RS00210at 52.828 kb on + strand, within LRK53_RS00210at 52.829 kb on - strand, within LRK53_RS00210at 52.829 kb on - strand, within LRK53_RS00210at 52.829 kb on - strand, within LRK53_RS00210at 52.829 kb on - strand, within LRK53_RS00210at 52.829 kb on - strand, within LRK53_RS00210at 52.895 kb on + strand, within LRK53_RS00210at 52.896 kb on - strand, within LRK53_RS00210at 52.896 kb on - strand, within LRK53_RS00210at 53.204 kb on + strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.205 kb on - strand, within LRK53_RS00210at 53.357 kb on + strandat 53.358 kb on - strandat 53.358 kb on - strandat 53.358 kb on - strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.386 kb on + strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.387 kb on - strandat 53.388 kb on + strandat 53.388 kb on + strandat 53.389 kb on - strandat 53.427 kb on + strandat 53.427 kb on + strandat 53.427 kb on + strandat 53.427 kb on + strandat 53.427 kb on + strandat 53.427 kb on + strandat 53.428 kb on - strandat 53.428 kb on - strandat 53.428 kb on - strandat 53.428 kb on - strandat 53.428 kb on - strandat 53.428 kb on - strandat 53.431 kb on + strandat 53.431 kb on + strandat 53.431 kb on + strandat 53.431 kb on + strandat 53.431 kb on + strandat 53.545 kb on - strand, within LRK53_RS00215at 53.572 kb on + strand, within LRK53_RS00215at 53.645 kb on - strand, within LRK53_RS00215at 53.683 kb on + strand, within LRK53_RS00215at 53.684 kb on - strand, within LRK53_RS00215at 53.684 kb on - strand, within LRK53_RS00215at 53.695 kb on + strand, within LRK53_RS00215at 53.695 kb on + strand, within LRK53_RS00215at 53.695 kb on + strand, within LRK53_RS00215at 53.696 kb on - strand, within LRK53_RS00215at 53.696 kb on - strand, within LRK53_RS00215at 53.696 kb on - strand, within LRK53_RS00215at 53.773 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.995 kb on + strand, within LRK53_RS00215at 53.996 kb on - strand, within LRK53_RS00215at 53.996 kb on - strand, within LRK53_RS00215at 53.996 kb on - strand, within LRK53_RS00215at 53.996 kb on - strand, within LRK53_RS00215at 53.996 kb on - strand, within LRK53_RS00215at 54.129 kb on + strandat 54.129 kb on + strandat 54.129 kb on + strandat 54.129 kb on + strandat 54.129 kb on + strandat 54.129 kb on + strandat 54.129 kb on + strandat 54.130 kb on - strandat 54.130 kb on - strandat 54.130 kb on - strandat 54.130 kb on - strandat 54.130 kb on - strandat 54.157 kb on + strandat 54.157 kb on + strandat 54.158 kb on - strandat 54.233 kb on + strandat 54.233 kb on + strandat 54.234 kb on - strandat 54.237 kb on + strandat 54.237 kb on + strandat 54.237 kb on + strandat 54.237 kb on + strandat 54.237 kb on + strandat 54.237 kb on + strandat 54.238 kb on - strandat 54.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4.5
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52,579 + LRK53_RS00210 0.37 +0.0
52,579 + LRK53_RS00210 0.37 +0.2
52,579 + LRK53_RS00210 0.37 -2.1
52,579 + LRK53_RS00210 0.37 -0.3
52,579 + LRK53_RS00210 0.37 +1.0
52,579 + LRK53_RS00210 0.37 -0.3
52,579 + LRK53_RS00210 0.37 -0.2
52,579 + LRK53_RS00210 0.37 -2.1
52,579 - LRK53_RS00210 0.37 -2.2
52,580 - LRK53_RS00210 0.37 -0.7
52,580 - LRK53_RS00210 0.37 -1.8
52,580 - LRK53_RS00210 0.37 -2.0
52,580 - LRK53_RS00210 0.37 -1.6
52,580 - LRK53_RS00210 0.37 -0.6
52,580 - LRK53_RS00210 0.37 +0.4
52,580 - LRK53_RS00210 0.37 -0.6
52,580 - LRK53_RS00210 0.37 +0.8
52,580 - LRK53_RS00210 0.37 +0.2
52,580 - LRK53_RS00210 0.37 -1.0
52,580 - LRK53_RS00210 0.37 -1.5
52,580 - LRK53_RS00210 0.37 +0.2
52,580 - LRK53_RS00210 0.37 -0.3
52,676 + LRK53_RS00210 0.44 -0.8
52,676 + LRK53_RS00210 0.44 -0.4
52,677 - LRK53_RS00210 0.44 +1.3
52,677 - LRK53_RS00210 0.44 -1.7
52,677 - LRK53_RS00210 0.44 -0.6
52,677 - LRK53_RS00210 0.44 +0.0
52,677 - LRK53_RS00210 0.44 +0.0
52,828 + LRK53_RS00210 0.56 +0.0
52,828 + LRK53_RS00210 0.56 -0.7
52,828 + LRK53_RS00210 0.56 +0.4
52,828 + LRK53_RS00210 0.56 -1.0
52,828 + LRK53_RS00210 0.56 -0.7
52,829 - LRK53_RS00210 0.56 +0.4
52,829 - LRK53_RS00210 0.56 -0.6
52,829 - LRK53_RS00210 0.56 -1.3
52,829 - LRK53_RS00210 0.56 +1.0
52,829 - LRK53_RS00210 0.56 +1.0
52,895 + LRK53_RS00210 0.61 +0.0
52,896 - LRK53_RS00210 0.61 +0.5
52,896 - LRK53_RS00210 0.61 -2.3
53,204 + LRK53_RS00210 0.85 +2.0
53,205 - LRK53_RS00210 0.85 -1.8
53,205 - LRK53_RS00210 0.85 -0.7
53,205 - LRK53_RS00210 0.85 -1.0
53,205 - LRK53_RS00210 0.85 -0.3
53,205 - LRK53_RS00210 0.85 +0.4
53,205 - LRK53_RS00210 0.85 +0.7
53,357 + +2.0
53,358 - -1.1
53,358 - -0.4
53,358 - +0.3
53,386 + -0.6
53,386 + -1.3
53,386 + +0.0
53,386 + -0.6
53,386 + -1.3
53,386 + -0.3
53,386 + +0.4
53,386 + +0.3
53,386 + -1.0
53,387 - -1.8
53,387 - -1.3
53,387 - +0.0
53,387 - -1.8
53,387 - +0.2
53,387 - -0.8
53,387 - +0.0
53,387 - -1.0
53,387 - -0.2
53,387 - -1.7
53,387 - +0.9
53,387 - +1.6
53,387 - +0.3
53,387 - -0.6
53,388 + +0.6
53,388 + -1.4
53,389 - -0.9
53,427 + -0.6
53,427 + +0.4
53,427 + -1.5
53,427 + +0.6
53,427 + -0.3
53,427 + -0.6
53,428 - -2.4
53,428 - -0.6
53,428 - +1.6
53,428 - +1.6
53,428 - -0.6
53,428 - -1.8
53,431 + -1.0
53,431 + -0.6
53,431 + +0.0
53,431 + +0.0
53,431 + +0.0
53,545 - LRK53_RS00215 0.11 -1.1
53,572 + LRK53_RS00215 0.15 +1.0
53,645 - LRK53_RS00215 0.27 +0.0
53,683 + LRK53_RS00215 0.33 -1.0
53,684 - LRK53_RS00215 0.34 +0.0
53,684 - LRK53_RS00215 0.34 +0.4
53,695 + LRK53_RS00215 0.35 -0.3
53,695 + LRK53_RS00215 0.35 -0.6
53,695 + LRK53_RS00215 0.35 -1.6
53,696 - LRK53_RS00215 0.36 -1.6
53,696 - LRK53_RS00215 0.36 -1.3
53,696 - LRK53_RS00215 0.36 -1.7
53,773 + LRK53_RS00215 0.48 +0.0
53,995 + LRK53_RS00215 0.85 -1.8
53,995 + LRK53_RS00215 0.85 -0.6
53,995 + LRK53_RS00215 0.85 -2.3
53,995 + LRK53_RS00215 0.85 -0.6
53,995 + LRK53_RS00215 0.85 -0.6
53,995 + LRK53_RS00215 0.85 -1.3
53,995 + LRK53_RS00215 0.85 +0.4
53,995 + LRK53_RS00215 0.85 +2.0
53,996 - LRK53_RS00215 0.85 -0.6
53,996 - LRK53_RS00215 0.85 -0.7
53,996 - LRK53_RS00215 0.85 +1.0
53,996 - LRK53_RS00215 0.85 +0.0
53,996 - LRK53_RS00215 0.85 +0.0
54,129 + +1.0
54,129 + -0.6
54,129 + +0.2
54,129 + -1.0
54,129 + +1.0
54,129 + -0.6
54,129 + -1.6
54,130 - +0.0
54,130 - +1.0
54,130 - +0.0
54,130 - -0.4
54,130 - -0.3
54,157 + +0.3
54,157 + +0.0
54,158 - -1.2
54,233 + +2.0
54,233 + -2.0
54,234 - -1.3
54,237 + +1.0
54,237 + +1.0
54,237 + +1.0
54,237 + -1.1
54,237 + -0.9
54,237 + +1.6
54,238 - -1.6
54,238 - -1.4

Or see this region's nucleotide sequence