Experiment: pH4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00115 and LRK53_RS00120 overlap by 4 nucleotides LRK53_RS00120 and LRK53_RS00125 are separated by 1 nucleotides LRK53_RS00125 and LRK53_RS00130 are separated by 92 nucleotides
LRK53_RS00115: LRK53_RS00115 - hypothetical protein, at 33,057 to 34,532
_RS00115
LRK53_RS00120: LRK53_RS00120 - ABC transporter ATP-binding protein, at 34,529 to 35,422
_RS00120
LRK53_RS00125: LRK53_RS00125 - GntR family transcriptional regulator, at 35,424 to 35,807
_RS00125
LRK53_RS00130: LRK53_RS00130 - S9 family peptidase, at 35,900 to 37,972
_RS00130
Position (kb) 35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.521 kb on + strand at 34.522 kb on - strand at 34.728 kb on + strand, within LRK53_RS00120 at 34.825 kb on + strand, within LRK53_RS00120 at 34.825 kb on + strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 34.826 kb on - strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.047 kb on + strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.048 kb on - strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.151 kb on + strand, within LRK53_RS00120 at 35.152 kb on - strand, within LRK53_RS00120 at 35.204 kb on + strand, within LRK53_RS00120 at 35.303 kb on - strand, within LRK53_RS00120 at 35.352 kb on + strand at 35.353 kb on - strand at 35.353 kb on - strand at 35.353 kb on - strand at 35.630 kb on - strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.758 kb on + strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.759 kb on - strand, within LRK53_RS00125 at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.784 kb on + strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.812 kb on - strand at 35.825 kb on + strand at 35.826 kb on - strand at 35.919 kb on + strand at 35.920 kb on - strand at 35.920 kb on - strand at 35.920 kb on - strand at 36.153 kb on + strand, within LRK53_RS00130 at 36.154 kb on - strand, within LRK53_RS00130 at 36.171 kb on + strand, within LRK53_RS00130 at 36.171 kb on + strand, within LRK53_RS00130 at 36.172 kb on - strand, within LRK53_RS00130 at 36.172 kb on - strand, within LRK53_RS00130 at 36.226 kb on - strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.228 kb on + strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.229 kb on - strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.318 kb on + strand, within LRK53_RS00130 at 36.319 kb on - strand, within LRK53_RS00130 at 36.319 kb on - strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.441 kb on + strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.442 kb on - strand, within LRK53_RS00130 at 36.492 kb on + strand, within LRK53_RS00130 at 36.493 kb on - strand, within LRK53_RS00130 at 36.609 kb on + strand, within LRK53_RS00130 at 36.609 kb on + strand, within LRK53_RS00130 at 36.610 kb on - strand, within LRK53_RS00130 at 36.610 kb on - strand, within LRK53_RS00130 at 36.622 kb on - strand, within LRK53_RS00130 at 36.774 kb on + strand, within LRK53_RS00130 at 36.775 kb on - strand, within LRK53_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction pH4.5 remove 34,521 + +1.0 34,522 - -1.6 34,728 + LRK53_RS00120 0.22 -1.3 34,825 + LRK53_RS00120 0.33 +1.0 34,825 + LRK53_RS00120 0.33 -0.5 34,826 - LRK53_RS00120 0.33 +1.0 34,826 - LRK53_RS00120 0.33 -0.7 34,826 - LRK53_RS00120 0.33 -1.3 35,047 + LRK53_RS00120 0.58 -1.6 35,047 + LRK53_RS00120 0.58 -2.6 35,047 + LRK53_RS00120 0.58 +0.0 35,047 + LRK53_RS00120 0.58 -0.8 35,047 + LRK53_RS00120 0.58 +0.4 35,047 + LRK53_RS00120 0.58 -0.6 35,047 + LRK53_RS00120 0.58 -0.2 35,047 + LRK53_RS00120 0.58 -0.3 35,048 - LRK53_RS00120 0.58 +0.0 35,048 - LRK53_RS00120 0.58 -1.4 35,048 - LRK53_RS00120 0.58 -0.4 35,048 - LRK53_RS00120 0.58 -1.0 35,048 - LRK53_RS00120 0.58 +0.1 35,048 - LRK53_RS00120 0.58 -0.2 35,151 + LRK53_RS00120 0.70 +0.0 35,151 + LRK53_RS00120 0.70 -1.0 35,151 + LRK53_RS00120 0.70 +0.0 35,151 + LRK53_RS00120 0.70 -0.1 35,152 - LRK53_RS00120 0.70 +0.0 35,204 + LRK53_RS00120 0.76 +0.4 35,303 - LRK53_RS00120 0.87 -0.2 35,352 + -0.6 35,353 - -1.3 35,353 - -0.6 35,353 - +2.0 35,630 - LRK53_RS00125 0.54 -1.3 35,758 + LRK53_RS00125 0.87 -1.8 35,758 + LRK53_RS00125 0.87 +1.0 35,758 + LRK53_RS00125 0.87 -1.0 35,758 + LRK53_RS00125 0.87 -0.8 35,759 - LRK53_RS00125 0.87 -0.7 35,759 - LRK53_RS00125 0.87 -0.3 35,759 - LRK53_RS00125 0.87 -0.6 35,759 - LRK53_RS00125 0.87 -1.8 35,784 + -0.6 35,784 + -1.7 35,784 + -0.9 35,784 + -1.2 35,784 + -2.0 35,784 + -1.0 35,784 + -0.6 35,784 + +0.4 35,784 + +0.0 35,784 + +1.0 35,784 + -0.3 35,784 + +0.0 35,784 + -0.6 35,784 + -1.1 35,784 + +0.6 35,784 + +2.0 35,784 + -1.0 35,784 + +1.0 35,784 + -1.2 35,784 + -1.0 35,784 + -1.3 35,784 + +1.0 35,784 + +1.2 35,784 + +0.6 35,784 + -1.8 35,784 + -1.2 35,784 + -0.6 35,784 + +0.0 35,784 + -1.0 35,784 + +0.0 35,784 + -0.9 35,784 + +0.2 35,784 + -0.2 35,784 + -1.0 35,784 + -0.1 35,784 + -0.3 35,784 + -1.6 35,784 + +0.7 35,784 + -0.4 35,784 + -0.6 35,784 + +0.7 35,784 + -0.6 35,784 + -1.0 35,784 + -1.1 35,784 + -0.6 35,784 + -1.0 35,784 + -1.8 35,785 - -1.3 35,785 - -0.1 35,785 - +0.0 35,785 - -0.4 35,785 - -0.6 35,785 - +0.0 35,785 - +2.0 35,785 - -1.0 35,785 - -0.3 35,785 - -1.3 35,785 - +0.0 35,785 - -1.3 35,785 - -1.2 35,785 - -1.3 35,785 - -0.9 35,785 - +0.0 35,785 - -1.3 35,785 - -0.3 35,785 - +0.0 35,785 - +1.0 35,785 - -2.2 35,785 - -0.5 35,785 - -0.6 35,785 - +1.0 35,785 - -1.6 35,785 - -1.8 35,785 - -0.7 35,785 - -1.4 35,785 - +0.4 35,785 - -1.0 35,785 - +1.0 35,785 - -2.0 35,785 - -0.1 35,785 - +0.0 35,785 - +0.0 35,785 - +0.0 35,785 - -0.9 35,785 - +0.0 35,785 - -0.9 35,785 - +1.0 35,785 - -1.1 35,785 - +1.0 35,785 - +1.0 35,785 - -1.2 35,785 - -0.6 35,785 - -0.1 35,785 - -1.0 35,785 - -1.0 35,785 - -1.2 35,812 - -0.3 35,825 + +0.0 35,826 - -1.0 35,919 + +1.0 35,920 - +1.0 35,920 - +1.0 35,920 - +1.3 36,153 + LRK53_RS00130 0.12 -0.8 36,154 - LRK53_RS00130 0.12 -1.8 36,171 + LRK53_RS00130 0.13 +0.0 36,171 + LRK53_RS00130 0.13 -2.0 36,172 - LRK53_RS00130 0.13 +0.4 36,172 - LRK53_RS00130 0.13 +1.0 36,226 - LRK53_RS00130 0.16 -0.3 36,228 + LRK53_RS00130 0.16 +0.0 36,228 + LRK53_RS00130 0.16 +0.3 36,228 + LRK53_RS00130 0.16 -0.3 36,228 + LRK53_RS00130 0.16 -1.8 36,228 + LRK53_RS00130 0.16 +1.0 36,228 + LRK53_RS00130 0.16 -0.4 36,228 + LRK53_RS00130 0.16 -1.1 36,228 + LRK53_RS00130 0.16 -0.7 36,228 + LRK53_RS00130 0.16 +0.0 36,228 + LRK53_RS00130 0.16 +0.8 36,229 - LRK53_RS00130 0.16 +0.2 36,229 - LRK53_RS00130 0.16 -1.1 36,229 - LRK53_RS00130 0.16 +0.4 36,229 - LRK53_RS00130 0.16 +1.0 36,229 - LRK53_RS00130 0.16 +1.0 36,229 - LRK53_RS00130 0.16 +0.0 36,229 - LRK53_RS00130 0.16 +0.1 36,229 - LRK53_RS00130 0.16 -0.6 36,229 - LRK53_RS00130 0.16 -2.9 36,318 + LRK53_RS00130 0.20 -1.6 36,318 + LRK53_RS00130 0.20 +0.0 36,318 + LRK53_RS00130 0.20 -2.3 36,319 - LRK53_RS00130 0.20 +0.2 36,319 - LRK53_RS00130 0.20 +0.0 36,441 + LRK53_RS00130 0.26 +1.0 36,441 + LRK53_RS00130 0.26 -1.2 36,441 + LRK53_RS00130 0.26 -1.6 36,441 + LRK53_RS00130 0.26 +0.4 36,441 + LRK53_RS00130 0.26 -1.0 36,441 + LRK53_RS00130 0.26 -1.0 36,441 + LRK53_RS00130 0.26 -1.3 36,441 + LRK53_RS00130 0.26 -1.0 36,442 - LRK53_RS00130 0.26 -0.1 36,442 - LRK53_RS00130 0.26 +0.0 36,442 - LRK53_RS00130 0.26 -2.2 36,442 - LRK53_RS00130 0.26 -1.0 36,442 - LRK53_RS00130 0.26 -1.8 36,442 - LRK53_RS00130 0.26 +1.0 36,442 - LRK53_RS00130 0.26 +1.0 36,442 - LRK53_RS00130 0.26 +2.0 36,442 - LRK53_RS00130 0.26 +1.0 36,442 - LRK53_RS00130 0.26 -1.3 36,492 + LRK53_RS00130 0.29 -1.0 36,493 - LRK53_RS00130 0.29 +2.0 36,609 + LRK53_RS00130 0.34 -0.2 36,609 + LRK53_RS00130 0.34 -1.6 36,610 - LRK53_RS00130 0.34 -1.0 36,610 - LRK53_RS00130 0.34 +0.0 36,622 - LRK53_RS00130 0.35 -0.6 36,774 + LRK53_RS00130 0.42 +0.4 36,775 - LRK53_RS00130 0.42 -0.6
Or see this region's nucleotide sequence