Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09145

Experiment: pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09140 and LRK53_RS09145 are separated by 17 nucleotidesLRK53_RS09145 and LRK53_RS09150 are separated by 206 nucleotides LRK53_RS09140: LRK53_RS09140 - YhdH/YhfP family quinone oxidoreductase, at 2,043,207 to 2,044,205 _RS09140 LRK53_RS09145: LRK53_RS09145 - TIGR00730 family Rossman fold protein, at 2,044,223 to 2,044,819 _RS09145 LRK53_RS09150: LRK53_RS09150 - dihydrolipoyl dehydrogenase, at 2,045,026 to 2,046,450 _RS09150 Position (kb) 2044 2045Strain fitness (log2 ratio) -2 -1 0 1 2at 2043.682 kb on + strand, within LRK53_RS09140at 2043.683 kb on - strand, within LRK53_RS09140at 2043.895 kb on + strand, within LRK53_RS09140at 2043.895 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.075 kb on + strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.076 kb on - strand, within LRK53_RS09140at 2044.090 kb on + strand, within LRK53_RS09140at 2044.090 kb on + strand, within LRK53_RS09140at 2044.090 kb on + strand, within LRK53_RS09140at 2044.091 kb on - strand, within LRK53_RS09140at 2044.091 kb on - strand, within LRK53_RS09140at 2044.091 kb on - strand, within LRK53_RS09140at 2044.091 kb on - strand, within LRK53_RS09140at 2044.263 kb on + strandat 2044.263 kb on + strandat 2044.263 kb on + strandat 2044.263 kb on + strandat 2044.263 kb on + strandat 2044.263 kb on + strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.264 kb on - strandat 2044.275 kb on + strandat 2044.276 kb on - strandat 2044.276 kb on - strandat 2044.276 kb on - strandat 2044.276 kb on - strandat 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.322 kb on + strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.323 kb on - strand, within LRK53_RS09145at 2044.395 kb on + strand, within LRK53_RS09145at 2044.395 kb on + strand, within LRK53_RS09145at 2044.395 kb on + strand, within LRK53_RS09145at 2044.396 kb on - strand, within LRK53_RS09145at 2044.398 kb on + strand, within LRK53_RS09145at 2044.398 kb on + strand, within LRK53_RS09145at 2044.398 kb on + strand, within LRK53_RS09145at 2044.399 kb on - strand, within LRK53_RS09145at 2044.399 kb on - strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.527 kb on + strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.528 kb on - strand, within LRK53_RS09145at 2044.698 kb on + strand, within LRK53_RS09145at 2044.698 kb on + strand, within LRK53_RS09145at 2044.698 kb on + strand, within LRK53_RS09145at 2044.698 kb on + strand, within LRK53_RS09145at 2044.698 kb on + strand, within LRK53_RS09145at 2044.699 kb on - strand, within LRK53_RS09145at 2044.699 kb on - strand, within LRK53_RS09145at 2044.699 kb on - strand, within LRK53_RS09145at 2044.699 kb on - strand, within LRK53_RS09145at 2044.699 kb on - strand, within LRK53_RS09145at 2044.758 kb on + strand, within LRK53_RS09145at 2044.759 kb on - strand, within LRK53_RS09145at 2044.759 kb on - strand, within LRK53_RS09145at 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.791 kb on + strandat 2044.792 kb on - strandat 2044.792 kb on - strandat 2044.847 kb on - strandat 2044.847 kb on - strandat 2044.847 kb on - strandat 2044.921 kb on + strandat 2044.921 kb on + strandat 2044.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4
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2,043,682 + LRK53_RS09140 0.48 +0.3
2,043,683 - LRK53_RS09140 0.48 -1.6
2,043,895 + LRK53_RS09140 0.69 +0.6
2,043,895 + LRK53_RS09140 0.69 +0.9
2,044,075 + LRK53_RS09140 0.87 -0.1
2,044,075 + LRK53_RS09140 0.87 -0.1
2,044,075 + LRK53_RS09140 0.87 -0.1
2,044,075 + LRK53_RS09140 0.87 -1.6
2,044,075 + LRK53_RS09140 0.87 -1.2
2,044,075 + LRK53_RS09140 0.87 -0.3
2,044,075 + LRK53_RS09140 0.87 -0.5
2,044,075 + LRK53_RS09140 0.87 -1.7
2,044,075 + LRK53_RS09140 0.87 +0.3
2,044,075 + LRK53_RS09140 0.87 +0.3
2,044,075 + LRK53_RS09140 0.87 -1.5
2,044,076 - LRK53_RS09140 0.87 -0.8
2,044,076 - LRK53_RS09140 0.87 -1.1
2,044,076 - LRK53_RS09140 0.87 +0.9
2,044,076 - LRK53_RS09140 0.87 -1.7
2,044,076 - LRK53_RS09140 0.87 -0.8
2,044,076 - LRK53_RS09140 0.87 +1.5
2,044,076 - LRK53_RS09140 0.87 -1.1
2,044,076 - LRK53_RS09140 0.87 -1.2
2,044,076 - LRK53_RS09140 0.87 -1.1
2,044,076 - LRK53_RS09140 0.87 -1.9
2,044,090 + LRK53_RS09140 0.88 -1.4
2,044,090 + LRK53_RS09140 0.88 -0.7
2,044,090 + LRK53_RS09140 0.88 -1.1
2,044,091 - LRK53_RS09140 0.88 +0.4
2,044,091 - LRK53_RS09140 0.88 -1.2
2,044,091 - LRK53_RS09140 0.88 -2.2
2,044,091 - LRK53_RS09140 0.88 -0.3
2,044,263 + -0.3
2,044,263 + -1.1
2,044,263 + +0.9
2,044,263 + -0.4
2,044,263 + +0.9
2,044,263 + +0.7
2,044,264 - -2.4
2,044,264 - -1.4
2,044,264 - +0.9
2,044,264 - -0.7
2,044,264 - -1.1
2,044,264 - -0.3
2,044,264 - +0.9
2,044,264 - +1.9
2,044,264 - -1.1
2,044,264 - +0.3
2,044,264 - -0.3
2,044,275 + +0.9
2,044,276 - -1.0
2,044,276 - -1.0
2,044,276 - -1.9
2,044,276 - -1.5
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 +0.0
2,044,322 + LRK53_RS09145 0.17 -0.3
2,044,322 + LRK53_RS09145 0.17 +0.1
2,044,322 + LRK53_RS09145 0.17 -0.4
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 -0.9
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 -0.5
2,044,322 + LRK53_RS09145 0.17 -1.9
2,044,322 + LRK53_RS09145 0.17 -0.7
2,044,322 + LRK53_RS09145 0.17 -0.1
2,044,322 + LRK53_RS09145 0.17 -0.7
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 +0.2
2,044,322 + LRK53_RS09145 0.17 -0.3
2,044,322 + LRK53_RS09145 0.17 -0.7
2,044,322 + LRK53_RS09145 0.17 -1.3
2,044,322 + LRK53_RS09145 0.17 -1.4
2,044,322 + LRK53_RS09145 0.17 -1.7
2,044,322 + LRK53_RS09145 0.17 -1.0
2,044,322 + LRK53_RS09145 0.17 +0.1
2,044,322 + LRK53_RS09145 0.17 -1.1
2,044,322 + LRK53_RS09145 0.17 +0.9
2,044,322 + LRK53_RS09145 0.17 -0.8
2,044,322 + LRK53_RS09145 0.17 -0.9
2,044,322 + LRK53_RS09145 0.17 -0.8
2,044,322 + LRK53_RS09145 0.17 -0.8
2,044,322 + LRK53_RS09145 0.17 -1.4
2,044,322 + LRK53_RS09145 0.17 -0.9
2,044,322 + LRK53_RS09145 0.17 +0.3
2,044,322 + LRK53_RS09145 0.17 -0.2
2,044,322 + LRK53_RS09145 0.17 +1.5
2,044,322 + LRK53_RS09145 0.17 -1.3
2,044,322 + LRK53_RS09145 0.17 -0.8
2,044,322 + LRK53_RS09145 0.17 -0.7
2,044,323 - LRK53_RS09145 0.17 -0.4
2,044,323 - LRK53_RS09145 0.17 -1.7
2,044,323 - LRK53_RS09145 0.17 -1.6
2,044,323 - LRK53_RS09145 0.17 -1.1
2,044,323 - LRK53_RS09145 0.17 -1.7
2,044,323 - LRK53_RS09145 0.17 -0.3
2,044,323 - LRK53_RS09145 0.17 +0.9
2,044,323 - LRK53_RS09145 0.17 +1.9
2,044,323 - LRK53_RS09145 0.17 -1.1
2,044,323 - LRK53_RS09145 0.17 -0.1
2,044,323 - LRK53_RS09145 0.17 -1.0
2,044,323 - LRK53_RS09145 0.17 -0.1
2,044,323 - LRK53_RS09145 0.17 -0.4
2,044,323 - LRK53_RS09145 0.17 -0.6
2,044,323 - LRK53_RS09145 0.17 -0.1
2,044,323 - LRK53_RS09145 0.17 -0.9
2,044,323 - LRK53_RS09145 0.17 +0.2
2,044,323 - LRK53_RS09145 0.17 +0.1
2,044,323 - LRK53_RS09145 0.17 -0.5
2,044,323 - LRK53_RS09145 0.17 -0.1
2,044,323 - LRK53_RS09145 0.17 -1.5
2,044,323 - LRK53_RS09145 0.17 -1.0
2,044,323 - LRK53_RS09145 0.17 +1.2
2,044,323 - LRK53_RS09145 0.17 -1.1
2,044,323 - LRK53_RS09145 0.17 +0.9
2,044,323 - LRK53_RS09145 0.17 -0.7
2,044,323 - LRK53_RS09145 0.17 -0.4
2,044,395 + LRK53_RS09145 0.29 -2.3
2,044,395 + LRK53_RS09145 0.29 -0.1
2,044,395 + LRK53_RS09145 0.29 -1.3
2,044,396 - LRK53_RS09145 0.29 +0.9
2,044,398 + LRK53_RS09145 0.29 -0.6
2,044,398 + LRK53_RS09145 0.29 +0.4
2,044,398 + LRK53_RS09145 0.29 -1.1
2,044,399 - LRK53_RS09145 0.29 +0.3
2,044,399 - LRK53_RS09145 0.29 -0.7
2,044,527 + LRK53_RS09145 0.51 +0.3
2,044,527 + LRK53_RS09145 0.51 -1.7
2,044,527 + LRK53_RS09145 0.51 +0.9
2,044,527 + LRK53_RS09145 0.51 -1.8
2,044,527 + LRK53_RS09145 0.51 +2.5
2,044,527 + LRK53_RS09145 0.51 -1.9
2,044,527 + LRK53_RS09145 0.51 -0.5
2,044,527 + LRK53_RS09145 0.51 -0.9
2,044,527 + LRK53_RS09145 0.51 -0.9
2,044,527 + LRK53_RS09145 0.51 +0.1
2,044,527 + LRK53_RS09145 0.51 +0.3
2,044,527 + LRK53_RS09145 0.51 -1.4
2,044,527 + LRK53_RS09145 0.51 -1.3
2,044,527 + LRK53_RS09145 0.51 -2.3
2,044,527 + LRK53_RS09145 0.51 -0.8
2,044,527 + LRK53_RS09145 0.51 -0.7
2,044,527 + LRK53_RS09145 0.51 -0.9
2,044,527 + LRK53_RS09145 0.51 +0.9
2,044,527 + LRK53_RS09145 0.51 -0.3
2,044,527 + LRK53_RS09145 0.51 -0.4
2,044,527 + LRK53_RS09145 0.51 -0.1
2,044,527 + LRK53_RS09145 0.51 +0.2
2,044,528 - LRK53_RS09145 0.51 +1.5
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 +2.5
2,044,528 - LRK53_RS09145 0.51 +1.9
2,044,528 - LRK53_RS09145 0.51 -1.2
2,044,528 - LRK53_RS09145 0.51 +0.1
2,044,528 - LRK53_RS09145 0.51 -1.1
2,044,528 - LRK53_RS09145 0.51 -0.3
2,044,528 - LRK53_RS09145 0.51 -0.1
2,044,528 - LRK53_RS09145 0.51 -1.8
2,044,528 - LRK53_RS09145 0.51 -2.2
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 +0.9
2,044,528 - LRK53_RS09145 0.51 -1.7
2,044,528 - LRK53_RS09145 0.51 -1.4
2,044,528 - LRK53_RS09145 0.51 -0.1
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 -1.5
2,044,528 - LRK53_RS09145 0.51 -1.4
2,044,528 - LRK53_RS09145 0.51 -0.5
2,044,528 - LRK53_RS09145 0.51 -1.1
2,044,528 - LRK53_RS09145 0.51 +0.1
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 -0.7
2,044,528 - LRK53_RS09145 0.51 -0.8
2,044,528 - LRK53_RS09145 0.51 -1.7
2,044,528 - LRK53_RS09145 0.51 +1.9
2,044,528 - LRK53_RS09145 0.51 -0.4
2,044,528 - LRK53_RS09145 0.51 +1.7
2,044,528 - LRK53_RS09145 0.51 +1.5
2,044,698 + LRK53_RS09145 0.80 +1.2
2,044,698 + LRK53_RS09145 0.80 -0.5
2,044,698 + LRK53_RS09145 0.80 -0.9
2,044,698 + LRK53_RS09145 0.80 -0.7
2,044,698 + LRK53_RS09145 0.80 +0.3
2,044,699 - LRK53_RS09145 0.80 -1.1
2,044,699 - LRK53_RS09145 0.80 +1.7
2,044,699 - LRK53_RS09145 0.80 +0.9
2,044,699 - LRK53_RS09145 0.80 -0.1
2,044,699 - LRK53_RS09145 0.80 -0.4
2,044,758 + LRK53_RS09145 0.90 -2.0
2,044,759 - LRK53_RS09145 0.90 -1.1
2,044,759 - LRK53_RS09145 0.90 +0.9
2,044,791 + -1.3
2,044,791 + -1.1
2,044,791 + +0.9
2,044,791 + -1.7
2,044,791 + -1.3
2,044,791 + -1.1
2,044,791 + -0.7
2,044,792 - +0.2
2,044,792 - -0.3
2,044,847 - -0.9
2,044,847 - +0.3
2,044,847 - -0.7
2,044,921 + -0.1
2,044,921 + -0.9
2,044,922 - +0.2

Or see this region's nucleotide sequence