Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01540

Experiment: pH4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01535 and LRK53_RS01540 are separated by 278 nucleotidesLRK53_RS01540 and LRK53_RS01545 overlap by 4 nucleotides LRK53_RS01535: LRK53_RS01535 - uroporphyrinogen-III synthase, at 363,616 to 364,395 _RS01535 LRK53_RS01540: LRK53_RS01540 - uroporphyrinogen-III C-methyltransferase, at 364,674 to 365,819 _RS01540 LRK53_RS01545: LRK53_RS01545 - tetratricopeptide repeat protein, at 365,816 to 367,072 _RS01545 Position (kb) 364 365 366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.638 kb on + strandat 364.638 kb on + strandat 364.638 kb on + strandat 364.639 kb on - strandat 364.639 kb on - strandat 364.639 kb on - strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.662 kb on + strandat 364.663 kb on - strandat 364.663 kb on - strandat 364.663 kb on - strandat 364.663 kb on - strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.684 kb on + strandat 364.685 kb on - strandat 364.685 kb on - strandat 364.685 kb on - strandat 364.685 kb on - strandat 364.685 kb on - strandat 364.685 kb on - strandat 364.869 kb on + strand, within LRK53_RS01540at 364.869 kb on + strand, within LRK53_RS01540at 364.869 kb on + strand, within LRK53_RS01540at 364.869 kb on + strand, within LRK53_RS01540at 364.869 kb on + strand, within LRK53_RS01540at 364.870 kb on - strand, within LRK53_RS01540at 364.925 kb on + strand, within LRK53_RS01540at 364.926 kb on - strand, within LRK53_RS01540at 364.926 kb on - strand, within LRK53_RS01540at 365.184 kb on + strand, within LRK53_RS01540at 365.184 kb on + strand, within LRK53_RS01540at 365.184 kb on + strand, within LRK53_RS01540at 365.184 kb on + strand, within LRK53_RS01540at 365.184 kb on + strand, within LRK53_RS01540at 365.185 kb on - strand, within LRK53_RS01540at 365.464 kb on + strand, within LRK53_RS01540at 365.464 kb on + strand, within LRK53_RS01540at 365.464 kb on + strand, within LRK53_RS01540at 365.574 kb on + strand, within LRK53_RS01540at 365.574 kb on + strand, within LRK53_RS01540at 365.574 kb on + strand, within LRK53_RS01540at 365.574 kb on + strand, within LRK53_RS01540at 365.574 kb on + strand, within LRK53_RS01540at 365.575 kb on - strand, within LRK53_RS01540at 365.575 kb on - strand, within LRK53_RS01540at 365.575 kb on - strand, within LRK53_RS01540at 365.575 kb on - strand, within LRK53_RS01540at 365.589 kb on + strand, within LRK53_RS01540at 365.590 kb on - strand, within LRK53_RS01540at 365.828 kb on + strandat 365.829 kb on - strandat 365.903 kb on + strandat 365.903 kb on + strandat 365.903 kb on + strandat 365.903 kb on + strandat 365.903 kb on + strandat 365.904 kb on - strandat 365.904 kb on - strandat 365.904 kb on - strandat 365.904 kb on - strandat 365.904 kb on - strandat 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.994 kb on + strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 365.995 kb on - strand, within LRK53_RS01545at 366.433 kb on - strand, within LRK53_RS01545at 366.464 kb on + strand, within LRK53_RS01545at 366.464 kb on + strand, within LRK53_RS01545at 366.464 kb on + strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.465 kb on - strand, within LRK53_RS01545at 366.590 kb on + strand, within LRK53_RS01545at 366.590 kb on + strand, within LRK53_RS01545at 366.590 kb on + strand, within LRK53_RS01545at 366.590 kb on + strand, within LRK53_RS01545at 366.591 kb on - strand, within LRK53_RS01545at 366.591 kb on - strand, within LRK53_RS01545at 366.591 kb on - strand, within LRK53_RS01545at 366.689 kb on + strand, within LRK53_RS01545at 366.690 kb on - strand, within LRK53_RS01545at 366.690 kb on - strand, within LRK53_RS01545at 366.813 kb on + strand, within LRK53_RS01545at 366.813 kb on + strand, within LRK53_RS01545at 366.814 kb on - strand, within LRK53_RS01545at 366.814 kb on - strand, within LRK53_RS01545at 366.814 kb on - strand, within LRK53_RS01545at 366.814 kb on - strand, within LRK53_RS01545at 366.814 kb on - strand, within LRK53_RS01545

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Per-strain Table

Position Strand Gene LocusTag Fraction pH4
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364,638 + -0.1
364,638 + -0.0
364,638 + -1.3
364,639 - +0.4
364,639 - -1.2
364,639 - -0.6
364,662 + -0.4
364,662 + -3.2
364,662 + -2.2
364,662 + -0.9
364,662 + -1.5
364,662 + +0.6
364,662 + +1.0
364,662 + -2.3
364,663 - -1.1
364,663 - +0.3
364,663 - -2.6
364,663 - -0.0
364,684 + -1.9
364,684 + -0.0
364,684 + -1.0
364,684 + -1.0
364,684 + -2.0
364,684 + -1.5
364,684 + -0.0
364,684 + -1.6
364,684 + +1.0
364,684 + -1.0
364,684 + -2.3
364,684 + -0.2
364,684 + +0.3
364,684 + +1.6
364,685 - -0.6
364,685 - -0.0
364,685 - +0.4
364,685 - -0.2
364,685 - +0.6
364,685 - -0.9
364,869 + LRK53_RS01540 0.17 -3.4
364,869 + LRK53_RS01540 0.17 -0.6
364,869 + LRK53_RS01540 0.17 -2.7
364,869 + LRK53_RS01540 0.17 +0.4
364,869 + LRK53_RS01540 0.17 -1.0
364,870 - LRK53_RS01540 0.17 +1.0
364,925 + LRK53_RS01540 0.22 -0.4
364,926 - LRK53_RS01540 0.22 -2.0
364,926 - LRK53_RS01540 0.22 -0.6
365,184 + LRK53_RS01540 0.45 -0.0
365,184 + LRK53_RS01540 0.45 -0.0
365,184 + LRK53_RS01540 0.45 +1.0
365,184 + LRK53_RS01540 0.45 -2.0
365,184 + LRK53_RS01540 0.45 -0.6
365,185 - LRK53_RS01540 0.45 +1.0
365,464 + LRK53_RS01540 0.69 -2.0
365,464 + LRK53_RS01540 0.69 +1.0
365,464 + LRK53_RS01540 0.69 -0.0
365,574 + LRK53_RS01540 0.79 -0.8
365,574 + LRK53_RS01540 0.79 -0.0
365,574 + LRK53_RS01540 0.79 -1.2
365,574 + LRK53_RS01540 0.79 +1.0
365,574 + LRK53_RS01540 0.79 +1.0
365,575 - LRK53_RS01540 0.79 -0.0
365,575 - LRK53_RS01540 0.79 -0.0
365,575 - LRK53_RS01540 0.79 -0.7
365,575 - LRK53_RS01540 0.79 -1.0
365,589 + LRK53_RS01540 0.80 -1.6
365,590 - LRK53_RS01540 0.80 -1.9
365,828 + -1.2
365,829 - -0.8
365,903 + +1.0
365,903 + +1.0
365,903 + -0.6
365,903 + -1.6
365,903 + +2.0
365,904 - +1.0
365,904 - +0.4
365,904 - -1.9
365,904 - -0.0
365,904 - +2.0
365,994 + LRK53_RS01545 0.14 -1.3
365,994 + LRK53_RS01545 0.14 +1.0
365,994 + LRK53_RS01545 0.14 -0.6
365,994 + LRK53_RS01545 0.14 +1.0
365,994 + LRK53_RS01545 0.14 -1.0
365,994 + LRK53_RS01545 0.14 -0.0
365,994 + LRK53_RS01545 0.14 +1.0
365,994 + LRK53_RS01545 0.14 -0.3
365,994 + LRK53_RS01545 0.14 -0.6
365,995 - LRK53_RS01545 0.14 -0.6
365,995 - LRK53_RS01545 0.14 -0.0
365,995 - LRK53_RS01545 0.14 +0.1
365,995 - LRK53_RS01545 0.14 -1.3
365,995 - LRK53_RS01545 0.14 -0.6
365,995 - LRK53_RS01545 0.14 -1.3
365,995 - LRK53_RS01545 0.14 -0.0
366,433 - LRK53_RS01545 0.49 -0.0
366,464 + LRK53_RS01545 0.52 -0.0
366,464 + LRK53_RS01545 0.52 -1.8
366,464 + LRK53_RS01545 0.52 -0.7
366,465 - LRK53_RS01545 0.52 -1.0
366,465 - LRK53_RS01545 0.52 -2.3
366,465 - LRK53_RS01545 0.52 -0.8
366,465 - LRK53_RS01545 0.52 -1.0
366,465 - LRK53_RS01545 0.52 -2.3
366,465 - LRK53_RS01545 0.52 -2.6
366,590 + LRK53_RS01545 0.62 -1.7
366,590 + LRK53_RS01545 0.62 -1.6
366,590 + LRK53_RS01545 0.62 -2.3
366,590 + LRK53_RS01545 0.62 +1.0
366,591 - LRK53_RS01545 0.62 -0.6
366,591 - LRK53_RS01545 0.62 -2.2
366,591 - LRK53_RS01545 0.62 -1.0
366,689 + LRK53_RS01545 0.69 -1.0
366,690 - LRK53_RS01545 0.70 -0.0
366,690 - LRK53_RS01545 0.70 -0.0
366,813 + LRK53_RS01545 0.79 -0.0
366,813 + LRK53_RS01545 0.79 -0.6
366,814 - LRK53_RS01545 0.79 -0.8
366,814 - LRK53_RS01545 0.79 -0.0
366,814 - LRK53_RS01545 0.79 -0.6
366,814 - LRK53_RS01545 0.79 +0.3
366,814 - LRK53_RS01545 0.79 -0.0

Or see this region's nucleotide sequence