Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18455

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18440 and LRK53_RS18445 are separated by 127 nucleotidesLRK53_RS18445 and LRK53_RS18450 are separated by 5 nucleotidesLRK53_RS18450 and LRK53_RS18455 are separated by 30 nucleotidesLRK53_RS18455 and LRK53_RS18460 are separated by 62 nucleotides LRK53_RS18440: LRK53_RS18440 - hypothetical protein, at 63,650 to 64,222 _RS18440 LRK53_RS18445: LRK53_RS18445 - hypothetical protein, at 64,350 to 64,673 _RS18445 LRK53_RS18450: LRK53_RS18450 - hypothetical protein, at 64,679 to 64,990 _RS18450 LRK53_RS18455: LRK53_RS18455 - DUF3761 domain-containing protein, at 65,021 to 65,623 _RS18455 LRK53_RS18460: LRK53_RS18460 - hypothetical protein, at 65,686 to 66,612 _RS18460 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 64.058 kb on + strand, within LRK53_RS18440at 64.094 kb on + strand, within LRK53_RS18440at 64.095 kb on - strand, within LRK53_RS18440at 64.095 kb on - strand, within LRK53_RS18440at 64.095 kb on - strand, within LRK53_RS18440at 64.095 kb on - strand, within LRK53_RS18440at 64.254 kb on - strandat 64.290 kb on - strandat 64.364 kb on - strandat 64.366 kb on + strandat 64.366 kb on + strandat 64.366 kb on + strandat 64.367 kb on - strandat 64.367 kb on - strandat 64.367 kb on - strandat 64.367 kb on - strandat 64.419 kb on + strand, within LRK53_RS18445at 64.419 kb on + strand, within LRK53_RS18445at 64.420 kb on - strand, within LRK53_RS18445at 64.537 kb on - strand, within LRK53_RS18445at 64.620 kb on + strand, within LRK53_RS18445at 64.750 kb on + strand, within LRK53_RS18450at 64.751 kb on - strand, within LRK53_RS18450at 64.868 kb on + strand, within LRK53_RS18450at 64.868 kb on + strand, within LRK53_RS18450at 64.868 kb on + strand, within LRK53_RS18450at 64.868 kb on + strand, within LRK53_RS18450at 64.868 kb on + strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.869 kb on - strand, within LRK53_RS18450at 64.895 kb on + strand, within LRK53_RS18450at 64.895 kb on + strand, within LRK53_RS18450at 64.896 kb on - strand, within LRK53_RS18450at 64.896 kb on - strand, within LRK53_RS18450at 65.020 kb on + strandat 65.020 kb on + strandat 65.020 kb on + strandat 65.020 kb on + strandat 65.021 kb on - strandat 65.021 kb on - strandat 65.021 kb on - strandat 65.021 kb on - strandat 65.021 kb on - strandat 65.180 kb on + strand, within LRK53_RS18455at 65.180 kb on + strand, within LRK53_RS18455at 65.180 kb on + strand, within LRK53_RS18455at 65.180 kb on + strand, within LRK53_RS18455at 65.180 kb on + strand, within LRK53_RS18455at 65.181 kb on - strand, within LRK53_RS18455at 65.181 kb on - strand, within LRK53_RS18455at 65.181 kb on - strand, within LRK53_RS18455at 65.393 kb on + strand, within LRK53_RS18455at 65.393 kb on + strand, within LRK53_RS18455at 65.393 kb on + strand, within LRK53_RS18455at 65.393 kb on + strand, within LRK53_RS18455at 65.394 kb on - strand, within LRK53_RS18455at 65.394 kb on - strand, within LRK53_RS18455at 65.394 kb on - strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.473 kb on + strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.474 kb on - strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.525 kb on + strand, within LRK53_RS18455at 65.526 kb on - strand, within LRK53_RS18455at 65.526 kb on - strand, within LRK53_RS18455at 65.526 kb on - strand, within LRK53_RS18455at 65.526 kb on - strand, within LRK53_RS18455at 65.644 kb on + strandat 65.644 kb on + strandat 65.644 kb on + strandat 65.644 kb on + strandat 65.647 kb on + strandat 65.647 kb on + strandat 65.712 kb on - strandat 65.712 kb on - strandat 65.764 kb on + strandat 65.764 kb on + strandat 65.764 kb on + strandat 65.764 kb on + strandat 65.764 kb on + strandat 65.765 kb on - strandat 65.765 kb on - strandat 65.765 kb on - strandat 65.765 kb on - strandat 65.765 kb on - strandat 66.184 kb on + strand, within LRK53_RS18460at 66.184 kb on + strand, within LRK53_RS18460at 66.184 kb on + strand, within LRK53_RS18460at 66.185 kb on - strand, within LRK53_RS18460at 66.435 kb on - strand, within LRK53_RS18460at 66.572 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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64,058 + LRK53_RS18440 0.71 +0.3
64,094 + LRK53_RS18440 0.77 +0.4
64,095 - LRK53_RS18440 0.78 +0.2
64,095 - LRK53_RS18440 0.78 +0.2
64,095 - LRK53_RS18440 0.78 +0.2
64,095 - LRK53_RS18440 0.78 +0.1
64,254 - -2.3
64,290 - +0.9
64,364 - -0.9
64,366 + -0.7
64,366 + -0.2
64,366 + -0.9
64,367 - -0.7
64,367 - +0.7
64,367 - -0.4
64,367 - -1.3
64,419 + LRK53_RS18445 0.21 -0.4
64,419 + LRK53_RS18445 0.21 +0.3
64,420 - LRK53_RS18445 0.22 +0.5
64,537 - LRK53_RS18445 0.58 -0.5
64,620 + LRK53_RS18445 0.83 -0.7
64,750 + LRK53_RS18450 0.23 -0.1
64,751 - LRK53_RS18450 0.23 -0.6
64,868 + LRK53_RS18450 0.61 -1.2
64,868 + LRK53_RS18450 0.61 -0.3
64,868 + LRK53_RS18450 0.61 -1.1
64,868 + LRK53_RS18450 0.61 +1.3
64,868 + LRK53_RS18450 0.61 -1.9
64,869 - LRK53_RS18450 0.61 -0.3
64,869 - LRK53_RS18450 0.61 -0.5
64,869 - LRK53_RS18450 0.61 -0.4
64,869 - LRK53_RS18450 0.61 -0.1
64,869 - LRK53_RS18450 0.61 -0.8
64,869 - LRK53_RS18450 0.61 -1.3
64,895 + LRK53_RS18450 0.69 -0.5
64,895 + LRK53_RS18450 0.69 -0.4
64,896 - LRK53_RS18450 0.70 -0.9
64,896 - LRK53_RS18450 0.70 +0.9
65,020 + +1.9
65,020 + -1.1
65,020 + -0.1
65,020 + -1.4
65,021 - +0.9
65,021 - +1.5
65,021 - -0.5
65,021 - -0.4
65,021 - -1.0
65,180 + LRK53_RS18455 0.26 -1.0
65,180 + LRK53_RS18455 0.26 -0.1
65,180 + LRK53_RS18455 0.26 -1.9
65,180 + LRK53_RS18455 0.26 -2.4
65,180 + LRK53_RS18455 0.26 -0.1
65,181 - LRK53_RS18455 0.27 +0.3
65,181 - LRK53_RS18455 0.27 -0.1
65,181 - LRK53_RS18455 0.27 +0.5
65,393 + LRK53_RS18455 0.62 -0.7
65,393 + LRK53_RS18455 0.62 -0.7
65,393 + LRK53_RS18455 0.62 +0.9
65,393 + LRK53_RS18455 0.62 -0.3
65,394 - LRK53_RS18455 0.62 +0.2
65,394 - LRK53_RS18455 0.62 -2.5
65,394 - LRK53_RS18455 0.62 -2.1
65,473 + LRK53_RS18455 0.75 +0.9
65,473 + LRK53_RS18455 0.75 -1.5
65,473 + LRK53_RS18455 0.75 -0.1
65,473 + LRK53_RS18455 0.75 -0.1
65,473 + LRK53_RS18455 0.75 +0.9
65,473 + LRK53_RS18455 0.75 -0.2
65,474 - LRK53_RS18455 0.75 -1.1
65,474 - LRK53_RS18455 0.75 -0.9
65,474 - LRK53_RS18455 0.75 -0.4
65,474 - LRK53_RS18455 0.75 -0.7
65,474 - LRK53_RS18455 0.75 -0.5
65,474 - LRK53_RS18455 0.75 -0.4
65,474 - LRK53_RS18455 0.75 +0.9
65,474 - LRK53_RS18455 0.75 -1.3
65,525 + LRK53_RS18455 0.84 -1.4
65,525 + LRK53_RS18455 0.84 -1.5
65,525 + LRK53_RS18455 0.84 -1.7
65,525 + LRK53_RS18455 0.84 -0.3
65,525 + LRK53_RS18455 0.84 -0.1
65,525 + LRK53_RS18455 0.84 -0.6
65,525 + LRK53_RS18455 0.84 -1.0
65,525 + LRK53_RS18455 0.84 -1.1
65,525 + LRK53_RS18455 0.84 -0.0
65,525 + LRK53_RS18455 0.84 -0.0
65,526 - LRK53_RS18455 0.84 -1.7
65,526 - LRK53_RS18455 0.84 +1.9
65,526 - LRK53_RS18455 0.84 -0.1
65,526 - LRK53_RS18455 0.84 -1.0
65,644 + +0.9
65,644 + +0.9
65,644 + -1.2
65,644 + -1.1
65,647 + +0.7
65,647 + -1.4
65,712 - +0.5
65,712 - -1.4
65,764 + -1.7
65,764 + -0.7
65,764 + -0.8
65,764 + -0.1
65,764 + -1.1
65,765 - +0.7
65,765 - +0.2
65,765 - -1.1
65,765 - -0.1
65,765 - +1.6
66,184 + LRK53_RS18460 0.54 -1.3
66,184 + LRK53_RS18460 0.54 +0.0
66,184 + LRK53_RS18460 0.54 +0.5
66,185 - LRK53_RS18460 0.54 -0.1
66,435 - LRK53_RS18460 0.81 -0.7
66,572 + -1.3

Or see this region's nucleotide sequence