Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14800

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14785 and LRK53_RS14790 overlap by 4 nucleotidesLRK53_RS14790 and LRK53_RS14795 are separated by 58 nucleotidesLRK53_RS14795 and LRK53_RS14800 are separated by 123 nucleotidesLRK53_RS14800 and LRK53_RS14805 overlap by 4 nucleotides LRK53_RS14785: LRK53_RS14785 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,237,970 to 3,239,124 _RS14785 LRK53_RS14790: LRK53_RS14790 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,239,121 to 3,239,624 _RS14790 LRK53_RS14795: LRK53_RS14795 - hypothetical protein, at 3,239,683 to 3,239,952 _RS14795 LRK53_RS14800: LRK53_RS14800 - DUF1631 domain-containing protein, at 3,240,076 to 3,242,334 _RS14800 LRK53_RS14805: LRK53_RS14805 - carboxylating nicotinate-nucleotide diphosphorylase, at 3,242,331 to 3,243,188 _RS14805 Position (kb) 3240 3241 3242 3243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3239.092 kb on + strandat 3239.189 kb on + strand, within LRK53_RS14790at 3239.189 kb on + strand, within LRK53_RS14790at 3239.189 kb on + strand, within LRK53_RS14790at 3239.190 kb on - strand, within LRK53_RS14790at 3239.464 kb on + strand, within LRK53_RS14790at 3239.464 kb on + strand, within LRK53_RS14790at 3239.464 kb on + strand, within LRK53_RS14790at 3239.647 kb on + strandat 3239.648 kb on - strandat 3239.648 kb on - strandat 3239.652 kb on + strandat 3239.652 kb on + strandat 3239.652 kb on + strandat 3239.652 kb on + strandat 3239.652 kb on + strandat 3239.652 kb on + strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.653 kb on - strandat 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.869 kb on + strand, within LRK53_RS14795at 3239.870 kb on - strand, within LRK53_RS14795at 3239.870 kb on - strand, within LRK53_RS14795at 3239.870 kb on - strand, within LRK53_RS14795at 3239.870 kb on - strand, within LRK53_RS14795at 3239.870 kb on - strand, within LRK53_RS14795at 3240.011 kb on + strandat 3240.054 kb on - strandat 3240.283 kb on + strandat 3240.283 kb on + strandat 3240.283 kb on + strandat 3240.283 kb on + strandat 3240.284 kb on - strandat 3240.284 kb on - strandat 3240.284 kb on - strandat 3240.284 kb on - strandat 3240.284 kb on - strandat 3240.661 kb on + strand, within LRK53_RS14800at 3240.661 kb on + strand, within LRK53_RS14800at 3240.661 kb on + strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.662 kb on - strand, within LRK53_RS14800at 3240.679 kb on + strand, within LRK53_RS14800at 3240.706 kb on + strand, within LRK53_RS14800at 3240.706 kb on + strand, within LRK53_RS14800at 3241.010 kb on - strand, within LRK53_RS14800at 3241.049 kb on + strand, within LRK53_RS14800at 3241.049 kb on + strand, within LRK53_RS14800at 3241.049 kb on + strand, within LRK53_RS14800at 3241.049 kb on + strand, within LRK53_RS14800at 3241.049 kb on + strand, within LRK53_RS14800at 3241.050 kb on - strand, within LRK53_RS14800at 3241.050 kb on - strand, within LRK53_RS14800at 3241.050 kb on - strand, within LRK53_RS14800at 3241.050 kb on - strand, within LRK53_RS14800at 3241.231 kb on + strand, within LRK53_RS14800at 3241.231 kb on + strand, within LRK53_RS14800at 3241.232 kb on - strand, within LRK53_RS14800at 3241.232 kb on - strand, within LRK53_RS14800at 3241.500 kb on - strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.861 kb on + strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3241.862 kb on - strand, within LRK53_RS14800at 3242.143 kb on + strandat 3242.182 kb on + strandat 3242.183 kb on - strandat 3242.700 kb on + strand, within LRK53_RS14805at 3242.700 kb on + strand, within LRK53_RS14805at 3242.700 kb on + strand, within LRK53_RS14805at 3242.700 kb on + strand, within LRK53_RS14805at 3242.701 kb on - strand, within LRK53_RS14805at 3242.701 kb on - strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.781 kb on + strand, within LRK53_RS14805at 3242.782 kb on - strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.826 kb on + strand, within LRK53_RS14805at 3242.827 kb on - strand, within LRK53_RS14805at 3242.827 kb on - strand, within LRK53_RS14805at 3243.096 kb on + strand, within LRK53_RS14805at 3243.096 kb on + strand, within LRK53_RS14805at 3243.096 kb on + strand, within LRK53_RS14805at 3243.096 kb on + strand, within LRK53_RS14805at 3243.097 kb on - strand, within LRK53_RS14805at 3243.097 kb on - strand, within LRK53_RS14805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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3,239,092 + -1.0
3,239,189 + LRK53_RS14790 0.13 +0.2
3,239,189 + LRK53_RS14790 0.13 -2.0
3,239,189 + LRK53_RS14790 0.13 -0.4
3,239,190 - LRK53_RS14790 0.14 -0.6
3,239,464 + LRK53_RS14790 0.68 -1.6
3,239,464 + LRK53_RS14790 0.68 -1.4
3,239,464 + LRK53_RS14790 0.68 -1.0
3,239,647 + -1.0
3,239,648 - -2.1
3,239,648 - -3.3
3,239,652 + +1.0
3,239,652 + +1.0
3,239,652 + +1.0
3,239,652 + -1.6
3,239,652 + -0.2
3,239,652 + +1.4
3,239,653 - +0.6
3,239,653 - +1.0
3,239,653 - -0.6
3,239,653 - +1.0
3,239,653 - +1.0
3,239,653 - -0.4
3,239,653 - -1.4
3,239,869 + LRK53_RS14795 0.69 -0.6
3,239,869 + LRK53_RS14795 0.69 -0.3
3,239,869 + LRK53_RS14795 0.69 -1.6
3,239,869 + LRK53_RS14795 0.69 +0.2
3,239,869 + LRK53_RS14795 0.69 -0.0
3,239,869 + LRK53_RS14795 0.69 -1.4
3,239,869 + LRK53_RS14795 0.69 -1.0
3,239,869 + LRK53_RS14795 0.69 -0.8
3,239,869 + LRK53_RS14795 0.69 +1.0
3,239,869 + LRK53_RS14795 0.69 -0.9
3,239,870 - LRK53_RS14795 0.69 -0.0
3,239,870 - LRK53_RS14795 0.69 -0.6
3,239,870 - LRK53_RS14795 0.69 -2.6
3,239,870 - LRK53_RS14795 0.69 -0.9
3,239,870 - LRK53_RS14795 0.69 -0.8
3,240,011 + -0.5
3,240,054 - -1.3
3,240,283 + -0.6
3,240,283 + -0.0
3,240,283 + -1.0
3,240,283 + -1.0
3,240,284 - -1.4
3,240,284 - -0.0
3,240,284 - -0.0
3,240,284 - -0.0
3,240,284 - -2.3
3,240,661 + LRK53_RS14800 0.26 -0.0
3,240,661 + LRK53_RS14800 0.26 -0.0
3,240,661 + LRK53_RS14800 0.26 +1.0
3,240,662 - LRK53_RS14800 0.26 +1.0
3,240,662 - LRK53_RS14800 0.26 -1.4
3,240,662 - LRK53_RS14800 0.26 -0.0
3,240,662 - LRK53_RS14800 0.26 +2.6
3,240,662 - LRK53_RS14800 0.26 -2.4
3,240,662 - LRK53_RS14800 0.26 -0.0
3,240,662 - LRK53_RS14800 0.26 -0.6
3,240,662 - LRK53_RS14800 0.26 -0.0
3,240,679 + LRK53_RS14800 0.27 +0.4
3,240,706 + LRK53_RS14800 0.28 +0.4
3,240,706 + LRK53_RS14800 0.28 -1.0
3,241,010 - LRK53_RS14800 0.41 -0.0
3,241,049 + LRK53_RS14800 0.43 -0.0
3,241,049 + LRK53_RS14800 0.43 -0.0
3,241,049 + LRK53_RS14800 0.43 -0.7
3,241,049 + LRK53_RS14800 0.43 +1.0
3,241,049 + LRK53_RS14800 0.43 -0.6
3,241,050 - LRK53_RS14800 0.43 -0.0
3,241,050 - LRK53_RS14800 0.43 -0.0
3,241,050 - LRK53_RS14800 0.43 -1.4
3,241,050 - LRK53_RS14800 0.43 -0.6
3,241,231 + LRK53_RS14800 0.51 +0.2
3,241,231 + LRK53_RS14800 0.51 -1.0
3,241,232 - LRK53_RS14800 0.51 -0.4
3,241,232 - LRK53_RS14800 0.51 -1.0
3,241,500 - LRK53_RS14800 0.63 +2.0
3,241,861 + LRK53_RS14800 0.79 -2.4
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -2.0
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 +0.3
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 +0.4
3,241,861 + LRK53_RS14800 0.79 -0.4
3,241,861 + LRK53_RS14800 0.79 -0.8
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -0.4
3,241,861 + LRK53_RS14800 0.79 -1.4
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 +0.6
3,241,861 + LRK53_RS14800 0.79 -0.0
3,241,861 + LRK53_RS14800 0.79 -0.3
3,241,861 + LRK53_RS14800 0.79 -0.0
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,861 + LRK53_RS14800 0.79 +1.0
3,241,861 + LRK53_RS14800 0.79 -1.8
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 -0.4
3,241,861 + LRK53_RS14800 0.79 -1.0
3,241,861 + LRK53_RS14800 0.79 -1.6
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,861 + LRK53_RS14800 0.79 -2.0
3,241,861 + LRK53_RS14800 0.79 -0.0
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,861 + LRK53_RS14800 0.79 -0.6
3,241,862 - LRK53_RS14800 0.79 +1.0
3,241,862 - LRK53_RS14800 0.79 +1.0
3,241,862 - LRK53_RS14800 0.79 -0.0
3,241,862 - LRK53_RS14800 0.79 +2.0
3,241,862 - LRK53_RS14800 0.79 -1.7
3,241,862 - LRK53_RS14800 0.79 +0.8
3,241,862 - LRK53_RS14800 0.79 +0.2
3,241,862 - LRK53_RS14800 0.79 -2.2
3,241,862 - LRK53_RS14800 0.79 -1.5
3,241,862 - LRK53_RS14800 0.79 -0.0
3,241,862 - LRK53_RS14800 0.79 -1.4
3,241,862 - LRK53_RS14800 0.79 -1.6
3,241,862 - LRK53_RS14800 0.79 -1.6
3,241,862 - LRK53_RS14800 0.79 -0.4
3,241,862 - LRK53_RS14800 0.79 -0.0
3,241,862 - LRK53_RS14800 0.79 +1.0
3,241,862 - LRK53_RS14800 0.79 +1.0
3,242,143 + -0.6
3,242,182 + -0.6
3,242,183 - -0.0
3,242,700 + LRK53_RS14805 0.43 -0.9
3,242,700 + LRK53_RS14805 0.43 -2.4
3,242,700 + LRK53_RS14805 0.43 -2.0
3,242,700 + LRK53_RS14805 0.43 -0.8
3,242,701 - LRK53_RS14805 0.43 +0.6
3,242,701 - LRK53_RS14805 0.43 +0.6
3,242,781 + LRK53_RS14805 0.52 +1.0
3,242,781 + LRK53_RS14805 0.52 -0.5
3,242,781 + LRK53_RS14805 0.52 -0.2
3,242,781 + LRK53_RS14805 0.52 -0.5
3,242,781 + LRK53_RS14805 0.52 -1.0
3,242,781 + LRK53_RS14805 0.52 +0.4
3,242,781 + LRK53_RS14805 0.52 +1.0
3,242,781 + LRK53_RS14805 0.52 -0.6
3,242,782 - LRK53_RS14805 0.53 -0.8
3,242,826 + LRK53_RS14805 0.58 -0.0
3,242,826 + LRK53_RS14805 0.58 +1.6
3,242,826 + LRK53_RS14805 0.58 -0.3
3,242,826 + LRK53_RS14805 0.58 +2.0
3,242,826 + LRK53_RS14805 0.58 -1.0
3,242,826 + LRK53_RS14805 0.58 -0.9
3,242,827 - LRK53_RS14805 0.58 +0.4
3,242,827 - LRK53_RS14805 0.58 -1.8
3,243,096 + LRK53_RS14805 0.89 +1.0
3,243,096 + LRK53_RS14805 0.89 -0.9
3,243,096 + LRK53_RS14805 0.89 +1.6
3,243,096 + LRK53_RS14805 0.89 -0.1
3,243,097 - LRK53_RS14805 0.89 -0.5
3,243,097 - LRK53_RS14805 0.89 -2.6

Or see this region's nucleotide sequence