Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08020 and LRK53_RS08025 are separated by 170 nucleotides LRK53_RS08025 and LRK53_RS08030 are separated by 56 nucleotides LRK53_RS08030 and LRK53_RS08035 are separated by 65 nucleotides LRK53_RS08035 and LRK53_RS08040 are separated by 37 nucleotides
LRK53_RS08020: LRK53_RS08020 - VOC family protein, at 1,803,195 to 1,803,587
_RS08020
LRK53_RS08025: LRK53_RS08025 - DUF2058 domain-containing protein, at 1,803,758 to 1,804,297
_RS08025
LRK53_RS08030: LRK53_RS08030 - cation diffusion facilitator family transporter, at 1,804,354 to 1,805,256
_RS08030
LRK53_RS08035: LRK53_RS08035 - Slp family lipoprotein, at 1,805,322 to 1,805,840
_RS08035
LRK53_RS08040: LRK53_RS08040 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 1,805,878 to 1,806,792
_RS08040
Position (kb) 1804
1805
1806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1803.519 kb on + strand, within LRK53_RS08020 at 1803.519 kb on + strand, within LRK53_RS08020 at 1803.520 kb on - strand, within LRK53_RS08020 at 1803.520 kb on - strand, within LRK53_RS08020 at 1803.549 kb on + strand at 1803.549 kb on + strand at 1803.550 kb on - strand at 1803.618 kb on - strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.795 kb on + strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.796 kb on - strand at 1803.798 kb on + strand at 1803.798 kb on + strand at 1803.798 kb on + strand at 1803.798 kb on + strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.799 kb on - strand at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.876 kb on + strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.877 kb on - strand, within LRK53_RS08025 at 1803.912 kb on + strand, within LRK53_RS08025 at 1803.912 kb on + strand, within LRK53_RS08025 at 1804.018 kb on - strand, within LRK53_RS08025 at 1804.961 kb on + strand, within LRK53_RS08030 at 1804.961 kb on + strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1804.962 kb on - strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.021 kb on + strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.022 kb on - strand, within LRK53_RS08030 at 1805.292 kb on - strand at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.434 kb on + strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.435 kb on - strand, within LRK53_RS08035 at 1805.509 kb on + strand, within LRK53_RS08035 at 1805.509 kb on + strand, within LRK53_RS08035 at 1805.510 kb on - strand, within LRK53_RS08035 at 1805.527 kb on + strand, within LRK53_RS08035 at 1805.528 kb on - strand, within LRK53_RS08035 at 1805.602 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.749 kb on + strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.750 kb on - strand, within LRK53_RS08035 at 1805.879 kb on + strand at 1805.880 kb on - strand at 1806.216 kb on - strand, within LRK53_RS08040 at 1806.216 kb on - strand, within LRK53_RS08040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,803,519 + LRK53_RS08020 0.82 +0.6 1,803,519 + LRK53_RS08020 0.82 -0.6 1,803,520 - LRK53_RS08020 0.83 -0.1 1,803,520 - LRK53_RS08020 0.83 +0.1 1,803,549 + +3.3 1,803,549 + -1.3 1,803,550 - -0.6 1,803,618 - +0.7 1,803,795 + -1.0 1,803,795 + -1.0 1,803,795 + +0.8 1,803,795 + -0.6 1,803,795 + -0.0 1,803,795 + -2.7 1,803,795 + -0.0 1,803,795 + -0.6 1,803,795 + -0.0 1,803,795 + -0.0 1,803,795 + -1.2 1,803,795 + +0.4 1,803,795 + +0.1 1,803,795 + -1.1 1,803,796 - -0.3 1,803,796 - -1.3 1,803,796 - -0.5 1,803,796 - -0.6 1,803,796 - -1.5 1,803,796 - +1.0 1,803,796 - -0.0 1,803,796 - +1.0 1,803,796 - -0.4 1,803,796 - -0.6 1,803,796 - -0.6 1,803,796 - -0.6 1,803,796 - +1.0 1,803,796 - +0.3 1,803,796 - -0.0 1,803,796 - +0.3 1,803,796 - +2.0 1,803,798 + -0.8 1,803,798 + -0.3 1,803,798 + -2.0 1,803,798 + -0.6 1,803,799 - -0.2 1,803,799 - -0.3 1,803,799 - +1.0 1,803,799 - +1.6 1,803,799 - -4.0 1,803,799 - -2.0 1,803,876 + LRK53_RS08025 0.22 +1.4 1,803,876 + LRK53_RS08025 0.22 -1.5 1,803,876 + LRK53_RS08025 0.22 -1.7 1,803,876 + LRK53_RS08025 0.22 +0.1 1,803,876 + LRK53_RS08025 0.22 -0.3 1,803,876 + LRK53_RS08025 0.22 -1.6 1,803,876 + LRK53_RS08025 0.22 -0.3 1,803,877 - LRK53_RS08025 0.22 +0.3 1,803,877 - LRK53_RS08025 0.22 +0.4 1,803,877 - LRK53_RS08025 0.22 -1.0 1,803,877 - LRK53_RS08025 0.22 +0.3 1,803,877 - LRK53_RS08025 0.22 -0.2 1,803,877 - LRK53_RS08025 0.22 +1.0 1,803,877 - LRK53_RS08025 0.22 -1.6 1,803,912 + LRK53_RS08025 0.29 -1.2 1,803,912 + LRK53_RS08025 0.29 -1.6 1,804,018 - LRK53_RS08025 0.48 -0.2 1,804,961 + LRK53_RS08030 0.67 +1.7 1,804,961 + LRK53_RS08030 0.67 -2.2 1,804,962 - LRK53_RS08030 0.67 -0.0 1,804,962 - LRK53_RS08030 0.67 -0.4 1,804,962 - LRK53_RS08030 0.67 -0.2 1,804,962 - LRK53_RS08030 0.67 +2.6 1,804,962 - LRK53_RS08030 0.67 -0.3 1,805,021 + LRK53_RS08030 0.74 +0.3 1,805,021 + LRK53_RS08030 0.74 +1.0 1,805,021 + LRK53_RS08030 0.74 +1.0 1,805,021 + LRK53_RS08030 0.74 -0.9 1,805,021 + LRK53_RS08030 0.74 -1.0 1,805,022 - LRK53_RS08030 0.74 +1.4 1,805,022 - LRK53_RS08030 0.74 +1.0 1,805,022 - LRK53_RS08030 0.74 -0.6 1,805,022 - LRK53_RS08030 0.74 -1.0 1,805,022 - LRK53_RS08030 0.74 -0.8 1,805,292 - -0.0 1,805,434 + LRK53_RS08035 0.22 -1.8 1,805,434 + LRK53_RS08035 0.22 +1.0 1,805,434 + LRK53_RS08035 0.22 -0.5 1,805,434 + LRK53_RS08035 0.22 -0.0 1,805,434 + LRK53_RS08035 0.22 +0.3 1,805,434 + LRK53_RS08035 0.22 -1.5 1,805,434 + LRK53_RS08035 0.22 +1.0 1,805,434 + LRK53_RS08035 0.22 -0.7 1,805,434 + LRK53_RS08035 0.22 -0.6 1,805,434 + LRK53_RS08035 0.22 +1.0 1,805,434 + LRK53_RS08035 0.22 -1.0 1,805,434 + LRK53_RS08035 0.22 -1.3 1,805,434 + LRK53_RS08035 0.22 -0.1 1,805,434 + LRK53_RS08035 0.22 -0.2 1,805,434 + LRK53_RS08035 0.22 -1.0 1,805,434 + LRK53_RS08035 0.22 -1.6 1,805,434 + LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -0.2 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -0.6 1,805,435 - LRK53_RS08035 0.22 +0.6 1,805,435 - LRK53_RS08035 0.22 -0.3 1,805,435 - LRK53_RS08035 0.22 +0.5 1,805,435 - LRK53_RS08035 0.22 +2.0 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -1.0 1,805,435 - LRK53_RS08035 0.22 -0.6 1,805,435 - LRK53_RS08035 0.22 -0.4 1,805,435 - LRK53_RS08035 0.22 +0.7 1,805,435 - LRK53_RS08035 0.22 +0.3 1,805,435 - LRK53_RS08035 0.22 -1.2 1,805,435 - LRK53_RS08035 0.22 +2.0 1,805,435 - LRK53_RS08035 0.22 -1.0 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -0.6 1,805,435 - LRK53_RS08035 0.22 -1.6 1,805,435 - LRK53_RS08035 0.22 -1.1 1,805,435 - LRK53_RS08035 0.22 -0.3 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 -0.0 1,805,435 - LRK53_RS08035 0.22 +0.3 1,805,509 + LRK53_RS08035 0.36 -0.0 1,805,509 + LRK53_RS08035 0.36 -0.6 1,805,510 - LRK53_RS08035 0.36 -1.0 1,805,527 + LRK53_RS08035 0.39 -0.6 1,805,528 - LRK53_RS08035 0.40 +2.0 1,805,602 + LRK53_RS08035 0.54 -0.2 1,805,749 + LRK53_RS08035 0.82 -0.0 1,805,749 + LRK53_RS08035 0.82 -1.8 1,805,749 + LRK53_RS08035 0.82 +1.0 1,805,749 + LRK53_RS08035 0.82 +1.0 1,805,749 + LRK53_RS08035 0.82 +2.0 1,805,749 + LRK53_RS08035 0.82 -0.2 1,805,749 + LRK53_RS08035 0.82 +1.0 1,805,749 + LRK53_RS08035 0.82 +0.6 1,805,750 - LRK53_RS08035 0.82 -1.0 1,805,750 - LRK53_RS08035 0.82 -0.0 1,805,750 - LRK53_RS08035 0.82 -0.0 1,805,750 - LRK53_RS08035 0.82 -0.4 1,805,750 - LRK53_RS08035 0.82 -1.3 1,805,750 - LRK53_RS08035 0.82 -0.3 1,805,750 - LRK53_RS08035 0.82 -0.0 1,805,750 - LRK53_RS08035 0.82 -1.5 1,805,879 + -1.4 1,805,880 - -1.0 1,806,216 - LRK53_RS08040 0.37 -0.0 1,806,216 - LRK53_RS08040 0.37 -0.4
Or see this region's nucleotide sequence