Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07790 and LRK53_RS07795 are separated by 179 nucleotides LRK53_RS07795 and LRK53_RS07800 overlap by 4 nucleotides LRK53_RS07800 and LRK53_RS07805 overlap by 4 nucleotides
LRK53_RS07790: LRK53_RS07790 - GGDEF domain-containing protein, at 1,739,245 to 1,741,116
_RS07790
LRK53_RS07795: LRK53_RS07795 - GspH/FimT family pseudopilin, at 1,741,296 to 1,741,919
_RS07795
LRK53_RS07800: LRK53_RS07800 - type IV pilus modification protein PilV, at 1,741,916 to 1,742,398
_RS07800
LRK53_RS07805: LRK53_RS07805 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,742,395 to 1,743,447
_RS07805
Position (kb) 1741
1742
1743 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1741.004 kb on + strand at 1741.005 kb on - strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.069 kb on + strand at 1741.070 kb on - strand at 1741.070 kb on - strand at 1741.114 kb on + strand at 1741.219 kb on - strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.261 kb on + strand at 1741.262 kb on - strand at 1741.659 kb on + strand, within LRK53_RS07795 at 1741.659 kb on + strand, within LRK53_RS07795 at 1741.659 kb on + strand, within LRK53_RS07795 at 1741.659 kb on + strand, within LRK53_RS07795 at 1741.659 kb on + strand, within LRK53_RS07795 at 1741.660 kb on - strand, within LRK53_RS07795 at 1741.660 kb on - strand, within LRK53_RS07795 at 1741.660 kb on - strand, within LRK53_RS07795 at 1741.740 kb on - strand, within LRK53_RS07795 at 1741.740 kb on - strand, within LRK53_RS07795 at 1741.740 kb on - strand, within LRK53_RS07795 at 1741.800 kb on + strand, within LRK53_RS07795 at 1741.801 kb on - strand, within LRK53_RS07795 at 1741.801 kb on - strand, within LRK53_RS07795 at 1741.801 kb on - strand, within LRK53_RS07795 at 1742.004 kb on + strand, within LRK53_RS07800 at 1742.005 kb on - strand, within LRK53_RS07800 at 1742.108 kb on + strand, within LRK53_RS07800 at 1742.108 kb on + strand, within LRK53_RS07800 at 1742.108 kb on + strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.109 kb on - strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.162 kb on + strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.163 kb on - strand, within LRK53_RS07800 at 1742.310 kb on + strand, within LRK53_RS07800 at 1742.311 kb on - strand, within LRK53_RS07800 at 1742.311 kb on - strand, within LRK53_RS07800 at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.394 kb on + strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.395 kb on - strand at 1742.554 kb on + strand, within LRK53_RS07805 at 1742.555 kb on - strand, within LRK53_RS07805 at 1742.555 kb on - strand, within LRK53_RS07805 at 1742.555 kb on - strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.678 kb on + strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.679 kb on - strand, within LRK53_RS07805 at 1742.734 kb on + strand, within LRK53_RS07805 at 1742.734 kb on + strand, within LRK53_RS07805 at 1742.735 kb on - strand, within LRK53_RS07805 at 1742.977 kb on + strand, within LRK53_RS07805 at 1742.977 kb on + strand, within LRK53_RS07805 at 1742.977 kb on + strand, within LRK53_RS07805 at 1742.977 kb on + strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1742.978 kb on - strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.142 kb on + strand, within LRK53_RS07805 at 1743.143 kb on - strand, within LRK53_RS07805 at 1743.143 kb on - strand, within LRK53_RS07805 at 1743.143 kb on - strand, within LRK53_RS07805 at 1743.143 kb on - strand, within LRK53_RS07805 at 1743.143 kb on - strand, within LRK53_RS07805 at 1743.151 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.265 kb on + strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805 at 1743.266 kb on - strand, within LRK53_RS07805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,741,004 + +2.0 1,741,005 - -1.8 1,741,069 + +0.4 1,741,069 + -1.3 1,741,069 + +1.8 1,741,069 + -0.6 1,741,069 + -0.6 1,741,069 + -0.7 1,741,069 + +0.4 1,741,070 - -1.4 1,741,070 - +0.0 1,741,114 + -0.8 1,741,219 - -0.6 1,741,261 + -0.6 1,741,261 + +0.0 1,741,261 + +1.0 1,741,261 + -0.2 1,741,261 + +1.0 1,741,261 + -0.4 1,741,261 + +0.6 1,741,261 + -1.2 1,741,261 + +0.0 1,741,261 + -1.4 1,741,262 - -0.3 1,741,659 + LRK53_RS07795 0.58 -0.4 1,741,659 + LRK53_RS07795 0.58 -1.0 1,741,659 + LRK53_RS07795 0.58 -0.1 1,741,659 + LRK53_RS07795 0.58 +0.4 1,741,659 + LRK53_RS07795 0.58 +1.0 1,741,660 - LRK53_RS07795 0.58 -0.3 1,741,660 - LRK53_RS07795 0.58 +0.1 1,741,660 - LRK53_RS07795 0.58 -0.4 1,741,740 - LRK53_RS07795 0.71 -0.5 1,741,740 - LRK53_RS07795 0.71 -1.2 1,741,740 - LRK53_RS07795 0.71 -0.3 1,741,800 + LRK53_RS07795 0.81 -0.3 1,741,801 - LRK53_RS07795 0.81 +1.0 1,741,801 - LRK53_RS07795 0.81 -1.1 1,741,801 - LRK53_RS07795 0.81 +0.0 1,742,004 + LRK53_RS07800 0.18 +0.0 1,742,005 - LRK53_RS07800 0.18 -0.3 1,742,108 + LRK53_RS07800 0.40 +0.7 1,742,108 + LRK53_RS07800 0.40 +2.6 1,742,108 + LRK53_RS07800 0.40 -0.2 1,742,109 - LRK53_RS07800 0.40 +0.3 1,742,109 - LRK53_RS07800 0.40 +0.0 1,742,109 - LRK53_RS07800 0.40 +0.2 1,742,109 - LRK53_RS07800 0.40 +1.4 1,742,109 - LRK53_RS07800 0.40 -1.0 1,742,109 - LRK53_RS07800 0.40 -0.2 1,742,109 - LRK53_RS07800 0.40 -0.6 1,742,109 - LRK53_RS07800 0.40 -0.6 1,742,162 + LRK53_RS07800 0.51 +0.0 1,742,162 + LRK53_RS07800 0.51 -1.8 1,742,162 + LRK53_RS07800 0.51 +0.0 1,742,162 + LRK53_RS07800 0.51 -0.4 1,742,162 + LRK53_RS07800 0.51 +0.2 1,742,162 + LRK53_RS07800 0.51 +0.0 1,742,163 - LRK53_RS07800 0.51 -2.0 1,742,163 - LRK53_RS07800 0.51 -1.6 1,742,163 - LRK53_RS07800 0.51 -0.1 1,742,163 - LRK53_RS07800 0.51 -0.6 1,742,163 - LRK53_RS07800 0.51 +0.0 1,742,163 - LRK53_RS07800 0.51 +0.0 1,742,163 - LRK53_RS07800 0.51 -1.0 1,742,163 - LRK53_RS07800 0.51 +0.0 1,742,163 - LRK53_RS07800 0.51 +0.1 1,742,163 - LRK53_RS07800 0.51 +1.0 1,742,310 + LRK53_RS07800 0.82 +0.4 1,742,311 - LRK53_RS07800 0.82 -0.9 1,742,311 - LRK53_RS07800 0.82 +0.0 1,742,394 + -0.3 1,742,394 + +1.3 1,742,394 + -0.4 1,742,394 + +0.2 1,742,394 + -2.8 1,742,394 + -1.1 1,742,394 + -1.0 1,742,394 + -1.1 1,742,394 + -0.6 1,742,394 + -2.1 1,742,394 + +0.6 1,742,394 + -0.6 1,742,394 + +0.0 1,742,394 + +0.6 1,742,394 + +0.5 1,742,394 + -1.3 1,742,394 + +3.0 1,742,395 - +0.6 1,742,395 - +1.0 1,742,395 - -0.6 1,742,395 - -0.8 1,742,395 - -2.2 1,742,395 - -0.9 1,742,395 - -0.9 1,742,395 - -1.8 1,742,395 - -1.0 1,742,395 - -0.6 1,742,395 - -1.0 1,742,395 - -1.4 1,742,395 - +1.6 1,742,395 - -0.2 1,742,395 - -0.6 1,742,554 + LRK53_RS07805 0.15 -0.6 1,742,555 - LRK53_RS07805 0.15 +0.0 1,742,555 - LRK53_RS07805 0.15 -1.8 1,742,555 - LRK53_RS07805 0.15 +1.0 1,742,678 + LRK53_RS07805 0.27 -0.6 1,742,678 + LRK53_RS07805 0.27 +0.4 1,742,678 + LRK53_RS07805 0.27 -0.6 1,742,678 + LRK53_RS07805 0.27 -2.2 1,742,678 + LRK53_RS07805 0.27 -1.8 1,742,678 + LRK53_RS07805 0.27 +1.0 1,742,678 + LRK53_RS07805 0.27 +0.2 1,742,678 + LRK53_RS07805 0.27 +0.6 1,742,678 + LRK53_RS07805 0.27 -0.1 1,742,678 + LRK53_RS07805 0.27 -0.6 1,742,678 + LRK53_RS07805 0.27 -0.3 1,742,678 + LRK53_RS07805 0.27 +0.7 1,742,678 + LRK53_RS07805 0.27 +0.0 1,742,678 + LRK53_RS07805 0.27 -0.9 1,742,678 + LRK53_RS07805 0.27 -1.0 1,742,678 + LRK53_RS07805 0.27 -2.9 1,742,678 + LRK53_RS07805 0.27 -1.6 1,742,678 + LRK53_RS07805 0.27 +0.0 1,742,678 + LRK53_RS07805 0.27 +2.6 1,742,678 + LRK53_RS07805 0.27 +0.4 1,742,679 - LRK53_RS07805 0.27 -1.3 1,742,679 - LRK53_RS07805 0.27 +0.0 1,742,679 - LRK53_RS07805 0.27 -2.9 1,742,679 - LRK53_RS07805 0.27 -0.6 1,742,679 - LRK53_RS07805 0.27 +0.4 1,742,679 - LRK53_RS07805 0.27 +0.4 1,742,679 - LRK53_RS07805 0.27 -1.6 1,742,679 - LRK53_RS07805 0.27 +0.4 1,742,679 - LRK53_RS07805 0.27 -0.7 1,742,679 - LRK53_RS07805 0.27 +0.2 1,742,679 - LRK53_RS07805 0.27 -1.8 1,742,679 - LRK53_RS07805 0.27 +1.0 1,742,679 - LRK53_RS07805 0.27 +0.0 1,742,734 + LRK53_RS07805 0.32 -1.6 1,742,734 + LRK53_RS07805 0.32 -1.3 1,742,735 - LRK53_RS07805 0.32 +2.0 1,742,977 + LRK53_RS07805 0.55 -0.2 1,742,977 + LRK53_RS07805 0.55 +0.0 1,742,977 + LRK53_RS07805 0.55 -0.6 1,742,977 + LRK53_RS07805 0.55 +0.4 1,742,978 - LRK53_RS07805 0.55 -0.9 1,742,978 - LRK53_RS07805 0.55 -1.2 1,742,978 - LRK53_RS07805 0.55 +2.0 1,742,978 - LRK53_RS07805 0.55 -1.3 1,742,978 - LRK53_RS07805 0.55 -0.1 1,742,978 - LRK53_RS07805 0.55 +1.0 1,743,142 + LRK53_RS07805 0.71 -0.6 1,743,142 + LRK53_RS07805 0.71 +1.3 1,743,142 + LRK53_RS07805 0.71 +0.7 1,743,142 + LRK53_RS07805 0.71 -0.6 1,743,142 + LRK53_RS07805 0.71 +1.6 1,743,142 + LRK53_RS07805 0.71 -0.6 1,743,142 + LRK53_RS07805 0.71 -1.5 1,743,142 + LRK53_RS07805 0.71 -0.5 1,743,142 + LRK53_RS07805 0.71 -1.0 1,743,143 - LRK53_RS07805 0.71 +0.0 1,743,143 - LRK53_RS07805 0.71 -0.5 1,743,143 - LRK53_RS07805 0.71 +1.0 1,743,143 - LRK53_RS07805 0.71 -0.7 1,743,143 - LRK53_RS07805 0.71 +0.4 1,743,151 + LRK53_RS07805 0.72 +0.0 1,743,265 + LRK53_RS07805 0.83 +1.0 1,743,265 + LRK53_RS07805 0.83 -0.3 1,743,265 + LRK53_RS07805 0.83 -1.3 1,743,265 + LRK53_RS07805 0.83 -0.6 1,743,265 + LRK53_RS07805 0.83 -1.1 1,743,265 + LRK53_RS07805 0.83 +0.4 1,743,266 - LRK53_RS07805 0.83 -0.7 1,743,266 - LRK53_RS07805 0.83 +0.0 1,743,266 - LRK53_RS07805 0.83 -0.3 1,743,266 - LRK53_RS07805 0.83 -1.4 1,743,266 - LRK53_RS07805 0.83 -0.5 1,743,266 - LRK53_RS07805 0.83 -1.6 1,743,266 - LRK53_RS07805 0.83 -1.1
Or see this region's nucleotide sequence