Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06765 and LRK53_RS06770 are separated by 1 nucleotides LRK53_RS06770 and LRK53_RS06775 overlap by 20 nucleotides LRK53_RS06775 and LRK53_RS06780 are separated by 55 nucleotides LRK53_RS06780 and LRK53_RS06785 are separated by 216 nucleotides
LRK53_RS06765: LRK53_RS06765 - phenylalanine--tRNA ligase subunit beta, at 1,531,127 to 1,533,505
_RS06765
LRK53_RS06770: LRK53_RS06770 - integration host factor subunit alpha, at 1,533,507 to 1,533,806
_RS06770
LRK53_RS06775: LRK53_RS06775 - MerR family transcriptional regulator, at 1,533,787 to 1,534,143
_RS06775
LRK53_RS06780: LRK53_RS06780 - tRNA-Pro, at 1,534,199 to 1,534,275
_RS06780
LRK53_RS06785: LRK53_RS06785 - zeta toxin family protein, at 1,534,492 to 1,535,205
_RS06785
Position (kb)
1533
1534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1533.594 kb on + strand, within LRK53_RS06770 at 1533.595 kb on - strand, within LRK53_RS06770 at 1533.595 kb on - strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.772 kb on + strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.773 kb on - strand, within LRK53_RS06770 at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.786 kb on + strand at 1533.804 kb on + strand at 1534.182 kb on + strand at 1534.182 kb on + strand at 1534.284 kb on - strand at 1534.288 kb on + strand at 1534.288 kb on + strand at 1534.288 kb on + strand at 1534.288 kb on + strand at 1534.288 kb on + strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.289 kb on - strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.341 kb on + strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.342 kb on - strand at 1534.377 kb on - strand at 1534.377 kb on - strand at 1534.377 kb on - strand at 1534.377 kb on - strand at 1534.377 kb on - strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.444 kb on + strand at 1534.445 kb on - strand at 1534.445 kb on - strand at 1534.445 kb on - strand at 1534.445 kb on - strand at 1534.445 kb on - strand at 1534.445 kb on - strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on + strand at 1534.447 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.448 kb on - strand at 1534.466 kb on + strand at 1534.466 kb on + strand at 1534.467 kb on - strand at 1534.467 kb on - strand at 1534.467 kb on - strand at 1534.467 kb on - strand at 1534.467 kb on - strand at 1534.582 kb on + strand, within LRK53_RS06785 at 1534.582 kb on + strand, within LRK53_RS06785 at 1534.582 kb on + strand, within LRK53_RS06785 at 1534.582 kb on + strand, within LRK53_RS06785 at 1534.583 kb on - strand, within LRK53_RS06785 at 1534.583 kb on - strand, within LRK53_RS06785 at 1534.583 kb on - strand, within LRK53_RS06785 at 1534.638 kb on + strand, within LRK53_RS06785 at 1534.639 kb on - strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.726 kb on + strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785 at 1534.727 kb on - strand, within LRK53_RS06785
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,533,594 + LRK53_RS06770 0.29 +0.0 1,533,595 - LRK53_RS06770 0.29 -0.6 1,533,595 - LRK53_RS06770 0.29 +1.0 1,533,772 + LRK53_RS06770 0.88 -2.9 1,533,772 + LRK53_RS06770 0.88 -0.8 1,533,772 + LRK53_RS06770 0.88 -2.6 1,533,772 + LRK53_RS06770 0.88 -1.0 1,533,772 + LRK53_RS06770 0.88 -0.6 1,533,772 + LRK53_RS06770 0.88 +0.2 1,533,772 + LRK53_RS06770 0.88 -0.3 1,533,772 + LRK53_RS06770 0.88 +0.4 1,533,772 + LRK53_RS06770 0.88 +0.0 1,533,772 + LRK53_RS06770 0.88 -2.1 1,533,772 + LRK53_RS06770 0.88 +1.4 1,533,772 + LRK53_RS06770 0.88 -1.0 1,533,772 + LRK53_RS06770 0.88 +0.0 1,533,772 + LRK53_RS06770 0.88 -2.6 1,533,772 + LRK53_RS06770 0.88 -1.0 1,533,772 + LRK53_RS06770 0.88 -1.3 1,533,772 + LRK53_RS06770 0.88 +0.3 1,533,772 + LRK53_RS06770 0.88 -1.0 1,533,772 + LRK53_RS06770 0.88 +0.0 1,533,772 + LRK53_RS06770 0.88 -1.0 1,533,772 + LRK53_RS06770 0.88 -1.1 1,533,772 + LRK53_RS06770 0.88 -0.6 1,533,772 + LRK53_RS06770 0.88 -1.2 1,533,772 + LRK53_RS06770 0.88 -1.8 1,533,772 + LRK53_RS06770 0.88 -0.6 1,533,772 + LRK53_RS06770 0.88 -0.6 1,533,772 + LRK53_RS06770 0.88 -1.3 1,533,773 - LRK53_RS06770 0.89 +0.0 1,533,773 - LRK53_RS06770 0.89 -0.6 1,533,773 - LRK53_RS06770 0.89 -2.6 1,533,773 - LRK53_RS06770 0.89 -2.4 1,533,773 - LRK53_RS06770 0.89 -2.3 1,533,773 - LRK53_RS06770 0.89 -1.0 1,533,773 - LRK53_RS06770 0.89 -1.1 1,533,786 + -0.4 1,533,786 + +0.2 1,533,786 + -1.8 1,533,786 + -0.3 1,533,786 + +0.1 1,533,786 + -1.3 1,533,786 + -0.8 1,533,786 + -2.1 1,533,786 + +0.4 1,533,786 + -0.7 1,533,786 + -0.8 1,533,786 + -0.3 1,533,786 + +0.4 1,533,804 + +0.0 1,534,182 + +2.0 1,534,182 + -3.1 1,534,284 - +0.5 1,534,288 + -1.3 1,534,288 + +0.0 1,534,288 + +1.0 1,534,288 + +1.0 1,534,288 + +1.0 1,534,289 - -0.7 1,534,289 - +1.0 1,534,289 - -0.6 1,534,289 - -0.8 1,534,289 - -1.0 1,534,289 - -0.6 1,534,289 - +1.0 1,534,289 - +0.0 1,534,289 - -1.9 1,534,341 + -0.4 1,534,341 + -0.3 1,534,341 + +0.0 1,534,341 + +0.3 1,534,341 + +1.0 1,534,341 + -0.6 1,534,341 + -0.6 1,534,342 - -0.9 1,534,342 - -0.5 1,534,342 - +0.4 1,534,342 - +1.0 1,534,342 - -1.0 1,534,342 - -1.0 1,534,342 - -0.7 1,534,342 - -0.6 1,534,377 - +4.0 1,534,377 - -1.3 1,534,377 - -1.4 1,534,377 - +0.2 1,534,377 - -1.9 1,534,444 + +0.0 1,534,444 + +2.0 1,534,444 + -2.1 1,534,444 + +0.1 1,534,444 + -1.6 1,534,444 + -1.3 1,534,444 + -0.1 1,534,444 + -0.6 1,534,444 + -1.7 1,534,445 - +0.0 1,534,445 - +0.4 1,534,445 - -1.5 1,534,445 - -0.7 1,534,445 - +0.6 1,534,445 - -0.2 1,534,447 + -1.3 1,534,447 + +0.0 1,534,447 + -1.0 1,534,447 + +1.0 1,534,447 + -2.1 1,534,447 + +0.4 1,534,447 + -1.3 1,534,447 + -1.3 1,534,447 + -0.3 1,534,447 - -1.3 1,534,448 - -0.6 1,534,448 - -0.2 1,534,448 - -0.6 1,534,448 - -1.3 1,534,448 - +0.0 1,534,448 - -1.6 1,534,448 - -0.3 1,534,448 - -0.3 1,534,448 - -1.1 1,534,448 - -0.5 1,534,448 - -2.3 1,534,448 - -1.6 1,534,448 - +0.1 1,534,448 - +0.8 1,534,448 - -0.7 1,534,448 - +1.0 1,534,448 - -1.2 1,534,448 - +0.4 1,534,448 - +0.0 1,534,448 - -1.4 1,534,466 + -0.6 1,534,466 + -1.6 1,534,467 - +0.3 1,534,467 - -1.0 1,534,467 - -0.9 1,534,467 - -0.1 1,534,467 - -2.6 1,534,582 + LRK53_RS06785 0.13 -0.6 1,534,582 + LRK53_RS06785 0.13 +1.0 1,534,582 + LRK53_RS06785 0.13 +1.0 1,534,582 + LRK53_RS06785 0.13 +0.3 1,534,583 - LRK53_RS06785 0.13 -0.5 1,534,583 - LRK53_RS06785 0.13 +0.0 1,534,583 - LRK53_RS06785 0.13 -1.0 1,534,638 + LRK53_RS06785 0.20 -1.6 1,534,639 - LRK53_RS06785 0.21 -1.3 1,534,726 + LRK53_RS06785 0.33 -1.1 1,534,726 + LRK53_RS06785 0.33 -0.6 1,534,726 + LRK53_RS06785 0.33 +1.0 1,534,726 + LRK53_RS06785 0.33 -0.3 1,534,726 + LRK53_RS06785 0.33 -0.2 1,534,726 + LRK53_RS06785 0.33 +0.4 1,534,726 + LRK53_RS06785 0.33 -1.6 1,534,726 + LRK53_RS06785 0.33 +0.3 1,534,726 + LRK53_RS06785 0.33 -0.6 1,534,726 + LRK53_RS06785 0.33 -1.0 1,534,726 + LRK53_RS06785 0.33 -0.2 1,534,726 + LRK53_RS06785 0.33 -0.1 1,534,726 + LRK53_RS06785 0.33 -0.5 1,534,726 + LRK53_RS06785 0.33 -1.5 1,534,726 + LRK53_RS06785 0.33 -0.6 1,534,727 - LRK53_RS06785 0.33 -0.5 1,534,727 - LRK53_RS06785 0.33 -1.0 1,534,727 - LRK53_RS06785 0.33 -0.3 1,534,727 - LRK53_RS06785 0.33 +1.0 1,534,727 - LRK53_RS06785 0.33 -1.2 1,534,727 - LRK53_RS06785 0.33 -1.6 1,534,727 - LRK53_RS06785 0.33 -0.5 1,534,727 - LRK53_RS06785 0.33 +1.8 1,534,727 - LRK53_RS06785 0.33 +1.0
Or see this region's nucleotide sequence