Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03415

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03405 and LRK53_RS03410 overlap by 4 nucleotidesLRK53_RS03410 and LRK53_RS03415 are separated by 121 nucleotidesLRK53_RS03415 and LRK53_RS03420 are separated by 40 nucleotidesLRK53_RS03420 and LRK53_RS03425 are separated by 262 nucleotides LRK53_RS03405: LRK53_RS03405 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 805,737 to 807,386 _RS03405 LRK53_RS03410: LRK53_RS03410 - SCP2 sterol-binding domain-containing protein, at 807,383 to 808,033 _RS03410 LRK53_RS03415: LRK53_RS03415 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 808,155 to 808,640 _RS03415 LRK53_RS03420: LRK53_RS03420 - hypothetical protein, at 808,681 to 808,884 _RS03420 LRK53_RS03425: LRK53_RS03425 - insulinase family protein, at 809,147 to 812,008 _RS03425 Position (kb) 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 807.455 kb on + strand, within LRK53_RS03410at 807.455 kb on + strand, within LRK53_RS03410at 807.455 kb on + strand, within LRK53_RS03410at 807.455 kb on + strand, within LRK53_RS03410at 807.456 kb on - strand, within LRK53_RS03410at 807.456 kb on - strand, within LRK53_RS03410at 807.456 kb on - strand, within LRK53_RS03410at 808.044 kb on + strandat 808.044 kb on + strandat 808.045 kb on - strandat 808.045 kb on - strandat 808.045 kb on - strandat 808.086 kb on + strandat 808.087 kb on - strandat 808.087 kb on - strandat 808.156 kb on + strandat 808.217 kb on - strand, within LRK53_RS03415at 808.462 kb on + strand, within LRK53_RS03415at 808.462 kb on + strand, within LRK53_RS03415at 808.462 kb on + strand, within LRK53_RS03415at 808.462 kb on + strand, within LRK53_RS03415at 808.462 kb on + strand, within LRK53_RS03415at 808.463 kb on - strand, within LRK53_RS03415at 808.463 kb on - strand, within LRK53_RS03415at 808.480 kb on + strand, within LRK53_RS03415at 808.481 kb on - strand, within LRK53_RS03415at 808.481 kb on - strand, within LRK53_RS03415at 808.481 kb on - strand, within LRK53_RS03415at 808.481 kb on - strand, within LRK53_RS03415at 808.489 kb on + strand, within LRK53_RS03415at 808.489 kb on + strand, within LRK53_RS03415at 808.489 kb on + strand, within LRK53_RS03415at 808.568 kb on + strand, within LRK53_RS03415at 808.568 kb on + strand, within LRK53_RS03415at 808.569 kb on - strand, within LRK53_RS03415at 808.599 kb on - strandat 808.650 kb on - strandat 808.731 kb on + strand, within LRK53_RS03420at 808.955 kb on + strandat 808.955 kb on + strandat 808.956 kb on - strandat 808.961 kb on + strandat 808.961 kb on + strandat 808.961 kb on + strandat 808.962 kb on - strandat 809.205 kb on + strandat 809.205 kb on + strandat 809.205 kb on + strandat 809.206 kb on - strandat 809.206 kb on - strandat 809.206 kb on - strandat 809.206 kb on - strandat 809.366 kb on + strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.367 kb on - strandat 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.534 kb on + strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425at 809.535 kb on - strand, within LRK53_RS03425

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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807,455 + LRK53_RS03410 0.11 -0.6
807,455 + LRK53_RS03410 0.11 -0.4
807,455 + LRK53_RS03410 0.11 +0.6
807,455 + LRK53_RS03410 0.11 -2.0
807,456 - LRK53_RS03410 0.11 +0.2
807,456 - LRK53_RS03410 0.11 -0.0
807,456 - LRK53_RS03410 0.11 -1.6
808,044 + -0.6
808,044 + -1.4
808,045 - +1.0
808,045 - -0.0
808,045 - +3.3
808,086 + -1.6
808,087 - -0.3
808,087 - -0.7
808,156 + +0.4
808,217 - LRK53_RS03415 0.13 -0.0
808,462 + LRK53_RS03415 0.63 -0.0
808,462 + LRK53_RS03415 0.63 -0.4
808,462 + LRK53_RS03415 0.63 -1.0
808,462 + LRK53_RS03415 0.63 -0.6
808,462 + LRK53_RS03415 0.63 -1.4
808,463 - LRK53_RS03415 0.63 +1.0
808,463 - LRK53_RS03415 0.63 -1.0
808,480 + LRK53_RS03415 0.67 -0.8
808,481 - LRK53_RS03415 0.67 -1.0
808,481 - LRK53_RS03415 0.67 -1.4
808,481 - LRK53_RS03415 0.67 -1.0
808,481 - LRK53_RS03415 0.67 -1.6
808,489 + LRK53_RS03415 0.69 -2.0
808,489 + LRK53_RS03415 0.69 +0.4
808,489 + LRK53_RS03415 0.69 -1.0
808,568 + LRK53_RS03415 0.85 -1.6
808,568 + LRK53_RS03415 0.85 -0.0
808,569 - LRK53_RS03415 0.85 -0.6
808,599 - -0.6
808,650 - -2.2
808,731 + LRK53_RS03420 0.25 -2.4
808,955 + -1.1
808,955 + -0.1
808,956 - -0.0
808,961 + -0.2
808,961 + -2.0
808,961 + +0.1
808,962 - +0.4
809,205 + -0.7
809,205 + -1.4
809,205 + -1.2
809,206 - -0.3
809,206 - -1.1
809,206 - -0.4
809,206 - +0.0
809,366 + +0.9
809,367 - +1.0
809,367 - -2.5
809,367 - -0.6
809,367 - -0.9
809,367 - +0.4
809,367 - -0.8
809,367 - +1.0
809,367 - -1.4
809,367 - -0.7
809,534 + LRK53_RS03425 0.14 +1.0
809,534 + LRK53_RS03425 0.14 -1.0
809,534 + LRK53_RS03425 0.14 -1.2
809,534 + LRK53_RS03425 0.14 -1.1
809,534 + LRK53_RS03425 0.14 +0.2
809,534 + LRK53_RS03425 0.14 -1.8
809,534 + LRK53_RS03425 0.14 +0.1
809,534 + LRK53_RS03425 0.14 +1.0
809,534 + LRK53_RS03425 0.14 -0.4
809,534 + LRK53_RS03425 0.14 -0.7
809,534 + LRK53_RS03425 0.14 -0.8
809,534 + LRK53_RS03425 0.14 -0.0
809,534 + LRK53_RS03425 0.14 +1.6
809,534 + LRK53_RS03425 0.14 +0.7
809,534 + LRK53_RS03425 0.14 -1.7
809,535 - LRK53_RS03425 0.14 -1.0
809,535 - LRK53_RS03425 0.14 -2.2
809,535 - LRK53_RS03425 0.14 +0.4
809,535 - LRK53_RS03425 0.14 -0.0
809,535 - LRK53_RS03425 0.14 +1.3
809,535 - LRK53_RS03425 0.14 -2.9
809,535 - LRK53_RS03425 0.14 -0.0
809,535 - LRK53_RS03425 0.14 +1.6
809,535 - LRK53_RS03425 0.14 -1.4
809,535 - LRK53_RS03425 0.14 -0.4
809,535 - LRK53_RS03425 0.14 -0.7
809,535 - LRK53_RS03425 0.14 -0.6
809,535 - LRK53_RS03425 0.14 +0.4
809,535 - LRK53_RS03425 0.14 +0.1
809,535 - LRK53_RS03425 0.14 -1.0

Or see this region's nucleotide sequence