Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01440

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01435 and LRK53_RS01440 are separated by 11 nucleotidesLRK53_RS01440 and LRK53_RS01445 overlap by 4 nucleotides LRK53_RS01435: LRK53_RS01435 - alpha/beta hydrolase, at 345,340 to 346,893 _RS01435 LRK53_RS01440: LRK53_RS01440 - ATP-binding cassette domain-containing protein, at 346,905 to 347,639 _RS01440 LRK53_RS01445: LRK53_RS01445 - ABC transporter permease subunit, at 347,636 to 348,841 _RS01445 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 345.926 kb on - strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.928 kb on + strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 345.929 kb on - strand, within LRK53_RS01435at 346.013 kb on - strand, within LRK53_RS01435at 346.036 kb on + strand, within LRK53_RS01435at 346.216 kb on + strand, within LRK53_RS01435at 346.280 kb on - strand, within LRK53_RS01435at 346.342 kb on + strand, within LRK53_RS01435at 346.345 kb on - strand, within LRK53_RS01435at 346.345 kb on - strand, within LRK53_RS01435at 346.475 kb on - strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.663 kb on + strand, within LRK53_RS01435at 346.664 kb on - strand, within LRK53_RS01435at 346.731 kb on - strand, within LRK53_RS01435at 346.891 kb on + strandat 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.046 kb on + strand, within LRK53_RS01440at 347.047 kb on - strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.160 kb on + strand, within LRK53_RS01440at 347.161 kb on - strand, within LRK53_RS01440at 347.193 kb on + strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.194 kb on - strand, within LRK53_RS01440at 347.347 kb on + strand, within LRK53_RS01440at 347.348 kb on - strand, within LRK53_RS01440at 347.858 kb on + strand, within LRK53_RS01445at 347.859 kb on - strand, within LRK53_RS01445at 348.029 kb on + strand, within LRK53_RS01445at 348.092 kb on + strand, within LRK53_RS01445at 348.228 kb on - strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.263 kb on + strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.264 kb on - strand, within LRK53_RS01445at 348.491 kb on + strand, within LRK53_RS01445at 348.491 kb on + strand, within LRK53_RS01445at 348.492 kb on - strand, within LRK53_RS01445at 348.492 kb on - strand, within LRK53_RS01445at 348.570 kb on - strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.587 kb on + strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445at 348.588 kb on - strand, within LRK53_RS01445

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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345,926 - LRK53_RS01435 0.38 -0.0
345,928 + LRK53_RS01435 0.38 -0.6
345,928 + LRK53_RS01435 0.38 +0.4
345,928 + LRK53_RS01435 0.38 -1.3
345,928 + LRK53_RS01435 0.38 -1.3
345,928 + LRK53_RS01435 0.38 -2.0
345,929 - LRK53_RS01435 0.38 +0.4
345,929 - LRK53_RS01435 0.38 +0.6
345,929 - LRK53_RS01435 0.38 -0.4
345,929 - LRK53_RS01435 0.38 -0.0
346,013 - LRK53_RS01435 0.43 -1.0
346,036 + LRK53_RS01435 0.45 -0.6
346,216 + LRK53_RS01435 0.56 -1.0
346,280 - LRK53_RS01435 0.60 +0.2
346,342 + LRK53_RS01435 0.64 -0.0
346,345 - LRK53_RS01435 0.65 -0.6
346,345 - LRK53_RS01435 0.65 +1.0
346,475 - LRK53_RS01435 0.73 +0.8
346,663 + LRK53_RS01435 0.85 -1.3
346,663 + LRK53_RS01435 0.85 -1.3
346,663 + LRK53_RS01435 0.85 -2.0
346,664 - LRK53_RS01435 0.85 -2.0
346,731 - LRK53_RS01435 0.90 +1.0
346,891 + -1.8
347,046 + LRK53_RS01440 0.19 -2.2
347,046 + LRK53_RS01440 0.19 -1.8
347,046 + LRK53_RS01440 0.19 -1.5
347,046 + LRK53_RS01440 0.19 -1.7
347,047 - LRK53_RS01440 0.19 -1.0
347,160 + LRK53_RS01440 0.35 +1.0
347,160 + LRK53_RS01440 0.35 -0.3
347,160 + LRK53_RS01440 0.35 -0.3
347,160 + LRK53_RS01440 0.35 -2.3
347,161 - LRK53_RS01440 0.35 -0.6
347,193 + LRK53_RS01440 0.39 -0.0
347,194 - LRK53_RS01440 0.39 -0.0
347,194 - LRK53_RS01440 0.39 -0.0
347,194 - LRK53_RS01440 0.39 -0.0
347,347 + LRK53_RS01440 0.60 -0.0
347,348 - LRK53_RS01440 0.60 -2.3
347,858 + LRK53_RS01445 0.18 -1.0
347,859 - LRK53_RS01445 0.18 -0.8
348,029 + LRK53_RS01445 0.33 -1.2
348,092 + LRK53_RS01445 0.38 -1.0
348,228 - LRK53_RS01445 0.49 +0.7
348,263 + LRK53_RS01445 0.52 -1.0
348,263 + LRK53_RS01445 0.52 -1.8
348,263 + LRK53_RS01445 0.52 -1.0
348,263 + LRK53_RS01445 0.52 +1.0
348,263 + LRK53_RS01445 0.52 -0.6
348,263 + LRK53_RS01445 0.52 +1.0
348,264 - LRK53_RS01445 0.52 -0.6
348,264 - LRK53_RS01445 0.52 +0.3
348,264 - LRK53_RS01445 0.52 +0.6
348,264 - LRK53_RS01445 0.52 -1.3
348,491 + LRK53_RS01445 0.71 -0.0
348,491 + LRK53_RS01445 0.71 +1.0
348,492 - LRK53_RS01445 0.71 -0.5
348,492 - LRK53_RS01445 0.71 -1.3
348,570 - LRK53_RS01445 0.77 +1.0
348,587 + LRK53_RS01445 0.79 -1.6
348,587 + LRK53_RS01445 0.79 +2.0
348,587 + LRK53_RS01445 0.79 -0.0
348,588 - LRK53_RS01445 0.79 -0.2
348,588 - LRK53_RS01445 0.79 -0.4
348,588 - LRK53_RS01445 0.79 -0.0
348,588 - LRK53_RS01445 0.79 +1.0
348,588 - LRK53_RS01445 0.79 -1.3
348,588 - LRK53_RS01445 0.79 -1.6
348,588 - LRK53_RS01445 0.79 -0.3

Or see this region's nucleotide sequence