Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01265

Experiment: G1M1_D11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01255 and HUW76_01260 are separated by 1 nucleotidesHUW76_01260 and HUW76_01265 are separated by 1 nucleotidesHUW76_01265 and HUW76_01270 are separated by 386 nucleotidesHUW76_01270 and HUW76_01275 are separated by 13 nucleotides HUW76_01255: HUW76_01255 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 244,075 to 245,430 _01255 HUW76_01260: HUW76_01260 - hypothetical protein, at 245,432 to 245,689 _01260 HUW76_01265: HUW76_01265 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 245,691 to 246,635 _01265 HUW76_01270: HUW76_01270 - YggT family protein, at 247,022 to 247,297 _01270 HUW76_01275: HUW76_01275 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 247,311 to 247,874 _01275 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 244.819 kb on - strand, within HUW76_01255at 244.832 kb on - strand, within HUW76_01255at 244.832 kb on - strand, within HUW76_01255at 244.832 kb on - strand, within HUW76_01255at 244.878 kb on + strand, within HUW76_01255at 244.878 kb on + strand, within HUW76_01255at 244.905 kb on - strand, within HUW76_01255at 245.017 kb on - strand, within HUW76_01255at 245.017 kb on - strand, within HUW76_01255at 245.074 kb on + strand, within HUW76_01255at 245.074 kb on + strand, within HUW76_01255at 245.074 kb on + strand, within HUW76_01255at 245.074 kb on + strand, within HUW76_01255at 245.243 kb on + strand, within HUW76_01255at 245.243 kb on + strand, within HUW76_01255at 245.329 kb on + strandat 245.478 kb on + strand, within HUW76_01260at 245.728 kb on - strandat 245.776 kb on - strandat 245.811 kb on + strand, within HUW76_01265at 245.884 kb on + strand, within HUW76_01265at 245.884 kb on + strand, within HUW76_01265at 245.915 kb on + strand, within HUW76_01265at 245.916 kb on - strand, within HUW76_01265at 245.924 kb on - strand, within HUW76_01265at 245.942 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.950 kb on + strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.958 kb on - strand, within HUW76_01265at 245.996 kb on - strand, within HUW76_01265at 245.996 kb on - strand, within HUW76_01265at 246.005 kb on - strand, within HUW76_01265at 246.005 kb on - strand, within HUW76_01265at 246.033 kb on + strand, within HUW76_01265at 246.041 kb on - strand, within HUW76_01265at 246.057 kb on - strand, within HUW76_01265at 246.066 kb on - strand, within HUW76_01265at 246.126 kb on - strand, within HUW76_01265at 246.183 kb on + strand, within HUW76_01265at 246.193 kb on + strand, within HUW76_01265at 246.193 kb on + strand, within HUW76_01265at 246.201 kb on - strand, within HUW76_01265at 246.218 kb on - strand, within HUW76_01265at 246.268 kb on - strand, within HUW76_01265at 246.283 kb on + strand, within HUW76_01265at 246.291 kb on - strand, within HUW76_01265at 246.291 kb on - strand, within HUW76_01265at 246.291 kb on - strand, within HUW76_01265at 246.310 kb on - strand, within HUW76_01265at 246.310 kb on - strand, within HUW76_01265at 246.314 kb on + strand, within HUW76_01265at 246.314 kb on + strand, within HUW76_01265at 246.316 kb on + strand, within HUW76_01265at 246.316 kb on + strand, within HUW76_01265at 246.317 kb on - strand, within HUW76_01265at 246.322 kb on - strand, within HUW76_01265at 246.322 kb on - strand, within HUW76_01265at 246.350 kb on + strand, within HUW76_01265at 246.350 kb on + strand, within HUW76_01265at 246.357 kb on - strand, within HUW76_01265at 246.362 kb on + strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.370 kb on - strand, within HUW76_01265at 246.388 kb on - strand, within HUW76_01265at 246.388 kb on - strand, within HUW76_01265at 246.454 kb on + strand, within HUW76_01265at 246.454 kb on + strand, within HUW76_01265at 246.454 kb on + strand, within HUW76_01265at 246.454 kb on + strand, within HUW76_01265at 246.462 kb on - strand, within HUW76_01265at 246.462 kb on - strand, within HUW76_01265at 246.462 kb on - strand, within HUW76_01265at 246.472 kb on + strand, within HUW76_01265at 246.544 kb on - strandat 246.544 kb on - strandat 246.544 kb on - strandat 246.544 kb on - strandat 246.546 kb on - strandat 246.546 kb on - strandat 246.547 kb on + strandat 246.547 kb on + strandat 246.547 kb on + strandat 246.556 kb on - strandat 246.556 kb on - strandat 246.562 kb on + strandat 246.594 kb on + strandat 246.599 kb on + strandat 246.602 kb on - strandat 246.602 kb on - strandat 246.602 kb on - strandat 246.608 kb on - strandat 246.681 kb on + strandat 246.967 kb on - strandat 247.074 kb on - strand, within HUW76_01270at 247.093 kb on - strand, within HUW76_01270at 247.093 kb on - strand, within HUW76_01270at 247.099 kb on + strand, within HUW76_01270at 247.099 kb on + strand, within HUW76_01270at 247.144 kb on - strand, within HUW76_01270

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D11
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244,819 - HUW76_01255 0.55 +0.3
244,832 - HUW76_01255 0.56 +2.0
244,832 - HUW76_01255 0.56 +0.4
244,832 - HUW76_01255 0.56 -2.7
244,878 + HUW76_01255 0.59 +2.4
244,878 + HUW76_01255 0.59 +3.8
244,905 - HUW76_01255 0.61 -0.1
245,017 - HUW76_01255 0.69 +0.6
245,017 - HUW76_01255 0.69 +2.6
245,074 + HUW76_01255 0.74 -0.4
245,074 + HUW76_01255 0.74 +1.4
245,074 + HUW76_01255 0.74 -0.2
245,074 + HUW76_01255 0.74 +0.8
245,243 + HUW76_01255 0.86 +0.4
245,243 + HUW76_01255 0.86 +1.2
245,329 + +2.4
245,478 + HUW76_01260 0.18 +1.6
245,728 - +2.4
245,776 - +0.4
245,811 + HUW76_01265 0.13 -2.6
245,884 + HUW76_01265 0.20 +0.6
245,884 + HUW76_01265 0.20 -0.3
245,915 + HUW76_01265 0.24 +0.7
245,916 - HUW76_01265 0.24 -1.5
245,924 - HUW76_01265 0.25 +0.9
245,942 + HUW76_01265 0.27 -1.6
245,950 + HUW76_01265 0.27 +0.1
245,950 + HUW76_01265 0.27 -1.5
245,950 + HUW76_01265 0.27 +1.4
245,950 + HUW76_01265 0.27 +1.5
245,950 + HUW76_01265 0.27 -1.0
245,950 + HUW76_01265 0.27 -1.3
245,950 + HUW76_01265 0.27 +2.0
245,950 + HUW76_01265 0.27 +0.4
245,950 + HUW76_01265 0.27 +1.4
245,950 + HUW76_01265 0.27 +0.5
245,950 + HUW76_01265 0.27 +2.4
245,950 + HUW76_01265 0.27 +0.0
245,950 + HUW76_01265 0.27 -2.4
245,958 - HUW76_01265 0.28 -2.5
245,958 - HUW76_01265 0.28 -0.7
245,958 - HUW76_01265 0.28 +2.2
245,958 - HUW76_01265 0.28 +0.3
245,958 - HUW76_01265 0.28 +2.0
245,958 - HUW76_01265 0.28 -0.7
245,958 - HUW76_01265 0.28 +2.4
245,958 - HUW76_01265 0.28 -1.5
245,958 - HUW76_01265 0.28 -0.1
245,958 - HUW76_01265 0.28 -0.7
245,958 - HUW76_01265 0.28 -1.4
245,958 - HUW76_01265 0.28 -0.4
245,996 - HUW76_01265 0.32 +0.7
245,996 - HUW76_01265 0.32 +0.7
246,005 - HUW76_01265 0.33 -0.1
246,005 - HUW76_01265 0.33 -1.2
246,033 + HUW76_01265 0.36 -1.2
246,041 - HUW76_01265 0.37 -1.0
246,057 - HUW76_01265 0.39 -2.2
246,066 - HUW76_01265 0.40 +1.2
246,126 - HUW76_01265 0.46 -2.5
246,183 + HUW76_01265 0.52 -2.5
246,193 + HUW76_01265 0.53 +1.6
246,193 + HUW76_01265 0.53 +0.2
246,201 - HUW76_01265 0.54 +2.7
246,218 - HUW76_01265 0.56 -0.2
246,268 - HUW76_01265 0.61 -1.5
246,283 + HUW76_01265 0.63 +1.5
246,291 - HUW76_01265 0.63 +2.1
246,291 - HUW76_01265 0.63 +0.2
246,291 - HUW76_01265 0.63 +2.0
246,310 - HUW76_01265 0.66 -1.8
246,310 - HUW76_01265 0.66 -0.3
246,314 + HUW76_01265 0.66 -0.7
246,314 + HUW76_01265 0.66 +0.7
246,316 + HUW76_01265 0.66 -0.6
246,316 + HUW76_01265 0.66 -0.8
246,317 - HUW76_01265 0.66 -1.5
246,322 - HUW76_01265 0.67 -1.1
246,322 - HUW76_01265 0.67 -0.8
246,350 + HUW76_01265 0.70 -0.0
246,350 + HUW76_01265 0.70 +1.8
246,357 - HUW76_01265 0.70 -2.2
246,362 + HUW76_01265 0.71 -2.3
246,370 - HUW76_01265 0.72 -1.8
246,370 - HUW76_01265 0.72 +1.4
246,370 - HUW76_01265 0.72 +0.5
246,370 - HUW76_01265 0.72 +1.3
246,370 - HUW76_01265 0.72 -1.9
246,370 - HUW76_01265 0.72 -2.1
246,388 - HUW76_01265 0.74 -0.5
246,388 - HUW76_01265 0.74 -0.6
246,454 + HUW76_01265 0.81 -1.7
246,454 + HUW76_01265 0.81 -1.0
246,454 + HUW76_01265 0.81 -1.0
246,454 + HUW76_01265 0.81 -1.9
246,462 - HUW76_01265 0.82 +0.0
246,462 - HUW76_01265 0.82 +1.2
246,462 - HUW76_01265 0.82 +3.1
246,472 + HUW76_01265 0.83 -2.1
246,544 - -1.5
246,544 - +0.9
246,544 - +0.6
246,544 - +1.3
246,546 - -1.4
246,546 - -1.1
246,547 + -0.4
246,547 + -0.9
246,547 + -1.5
246,556 - +3.3
246,556 - -0.1
246,562 + +2.2
246,594 + -2.7
246,599 + +1.1
246,602 - +0.4
246,602 - -1.5
246,602 - -0.3
246,608 - +0.1
246,681 + -2.0
246,967 - +0.3
247,074 - HUW76_01270 0.19 -0.1
247,093 - HUW76_01270 0.26 -0.6
247,093 - HUW76_01270 0.26 -1.2
247,099 + HUW76_01270 0.28 -0.1
247,099 + HUW76_01270 0.28 +0.4
247,144 - HUW76_01270 0.44 -1.8

Or see this region's nucleotide sequence