Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07440 and LRK53_RS07445 are separated by 19 nucleotides LRK53_RS07445 and LRK53_RS07450 are separated by 45 nucleotides LRK53_RS07450 and LRK53_RS07455 are separated by 98 nucleotides
LRK53_RS07440: LRK53_RS07440 - ribosome maturation factor RimM, at 1,665,036 to 1,665,551
_RS07440
LRK53_RS07445: LRK53_RS07445 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,665,571 to 1,666,344
_RS07445
LRK53_RS07450: LRK53_RS07450 - 50S ribosomal protein L19, at 1,666,390 to 1,666,782
_RS07450
LRK53_RS07455: LRK53_RS07455 - GGDEF domain-containing phosphodiesterase, at 1,666,881 to 1,668,923
_RS07455
Position (kb)
1666
1667 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1666.681 kb on + strand, within LRK53_RS07450 at 1666.684 kb on + strand, within LRK53_RS07450 at 1666.684 kb on + strand, within LRK53_RS07450 at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.780 kb on + strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1666.781 kb on - strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.071 kb on + strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.072 kb on - strand at 1667.092 kb on + strand, within LRK53_RS07455 at 1667.092 kb on + strand, within LRK53_RS07455 at 1667.093 kb on - strand, within LRK53_RS07455 at 1667.093 kb on - strand, within LRK53_RS07455 at 1667.426 kb on + strand, within LRK53_RS07455 at 1667.427 kb on - strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.512 kb on + strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.513 kb on - strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.554 kb on + strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.555 kb on - strand, within LRK53_RS07455 at 1667.606 kb on - strand, within LRK53_RS07455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,666,681 + LRK53_RS07450 0.74 -2.9 1,666,684 + LRK53_RS07450 0.75 +1.0 1,666,684 + LRK53_RS07450 0.75 +1.0 1,666,780 + -1.3 1,666,780 + -1.4 1,666,780 + +1.0 1,666,780 + -2.1 1,666,781 - -0.6 1,666,781 - -1.0 1,666,781 - -0.6 1,666,781 - +2.2 1,667,071 + -1.1 1,667,071 + -0.5 1,667,071 + +0.4 1,667,071 + -1.8 1,667,071 + -0.1 1,667,071 + -1.0 1,667,071 + -0.7 1,667,071 + +0.0 1,667,071 + +0.2 1,667,071 + -0.8 1,667,071 + +1.3 1,667,071 + -1.0 1,667,072 - +0.0 1,667,072 - -1.8 1,667,072 - +1.0 1,667,072 - +1.0 1,667,072 - +0.0 1,667,072 - -0.2 1,667,072 - +1.0 1,667,072 - -1.5 1,667,072 - +0.0 1,667,072 - +1.0 1,667,072 - -0.2 1,667,092 + LRK53_RS07455 0.10 -1.2 1,667,092 + LRK53_RS07455 0.10 -1.3 1,667,093 - LRK53_RS07455 0.10 -0.8 1,667,093 - LRK53_RS07455 0.10 +0.7 1,667,426 + LRK53_RS07455 0.27 -0.6 1,667,427 - LRK53_RS07455 0.27 -0.3 1,667,512 + LRK53_RS07455 0.31 -1.6 1,667,512 + LRK53_RS07455 0.31 -3.6 1,667,512 + LRK53_RS07455 0.31 +0.0 1,667,512 + LRK53_RS07455 0.31 +1.0 1,667,513 - LRK53_RS07455 0.31 +0.0 1,667,513 - LRK53_RS07455 0.31 +0.7 1,667,513 - LRK53_RS07455 0.31 -1.3 1,667,554 + LRK53_RS07455 0.33 +1.0 1,667,554 + LRK53_RS07455 0.33 +0.4 1,667,554 + LRK53_RS07455 0.33 +0.0 1,667,554 + LRK53_RS07455 0.33 -1.3 1,667,555 - LRK53_RS07455 0.33 -1.1 1,667,555 - LRK53_RS07455 0.33 +2.6 1,667,555 - LRK53_RS07455 0.33 -1.3 1,667,555 - LRK53_RS07455 0.33 -0.6 1,667,555 - LRK53_RS07455 0.33 +0.0 1,667,555 - LRK53_RS07455 0.33 -0.6 1,667,555 - LRK53_RS07455 0.33 +0.0 1,667,606 - LRK53_RS07455 0.35 +0.0
Or see this region's nucleotide sequence