Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS06155 and LRK53_RS06160 overlap by 4 nucleotides LRK53_RS06160 and LRK53_RS06165 are separated by 106 nucleotides LRK53_RS06165 and LRK53_RS06170 overlap by 4 nucleotides LRK53_RS06170 and LRK53_RS06175 overlap by 1 nucleotides LRK53_RS06175 and LRK53_RS06180 are separated by 29 nucleotides
LRK53_RS06155: LRK53_RS06155 - DUF2069 domain-containing protein, at 1,413,644 to 1,414,015
_RS06155
LRK53_RS06160: LRK53_RS06160 - NAD(P)H:quinone oxidoreductase, at 1,414,012 to 1,414,614
_RS06160
LRK53_RS06165: LRK53_RS06165 - YihY family inner membrane protein, at 1,414,721 to 1,415,998
_RS06165
LRK53_RS06170: LRK53_RS06170 - TlpA family protein disulfide reductase, at 1,415,995 to 1,416,480
_RS06170
LRK53_RS06175: LRK53_RS06175 - acylphosphatase, at 1,416,480 to 1,416,746
_RS06175
LRK53_RS06180: LRK53_RS06180 - DUF779 domain-containing protein, at 1,416,776 to 1,417,159
_RS06180
Position (kb) 1414
1415
1416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1413.730 kb on - strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.792 kb on + strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1413.793 kb on - strand, within LRK53_RS06155 at 1414.181 kb on + strand, within LRK53_RS06160 at 1414.181 kb on + strand, within LRK53_RS06160 at 1414.182 kb on - strand, within LRK53_RS06160 at 1414.586 kb on + strand at 1414.586 kb on + strand at 1414.587 kb on - strand at 1414.587 kb on - strand at 1414.587 kb on - strand at 1414.587 kb on - strand at 1414.587 kb on - strand at 1414.589 kb on + strand at 1414.589 kb on + strand at 1414.589 kb on + strand at 1414.589 kb on + strand at 1414.589 kb on + strand at 1414.658 kb on + strand at 1414.659 kb on - strand at 1414.659 kb on - strand at 1414.659 kb on - strand at 1414.663 kb on + strand at 1414.823 kb on + strand at 1414.823 kb on + strand at 1414.824 kb on - strand at 1414.824 kb on - strand at 1414.824 kb on - strand at 1415.129 kb on + strand, within LRK53_RS06165 at 1415.130 kb on - strand, within LRK53_RS06165 at 1415.130 kb on - strand, within LRK53_RS06165 at 1415.189 kb on + strand, within LRK53_RS06165 at 1415.189 kb on + strand, within LRK53_RS06165 at 1415.190 kb on - strand, within LRK53_RS06165 at 1415.190 kb on - strand, within LRK53_RS06165 at 1415.190 kb on - strand, within LRK53_RS06165 at 1415.303 kb on + strand, within LRK53_RS06165 at 1415.303 kb on + strand, within LRK53_RS06165 at 1415.303 kb on + strand, within LRK53_RS06165 at 1415.303 kb on + strand, within LRK53_RS06165 at 1415.303 kb on + strand, within LRK53_RS06165 at 1415.304 kb on - strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.426 kb on + strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.427 kb on - strand, within LRK53_RS06165 at 1415.438 kb on + strand, within LRK53_RS06165 at 1415.438 kb on + strand, within LRK53_RS06165 at 1415.438 kb on + strand, within LRK53_RS06165 at 1415.439 kb on - strand, within LRK53_RS06165 at 1415.439 kb on - strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.480 kb on + strand, within LRK53_RS06165 at 1415.481 kb on - strand, within LRK53_RS06165 at 1415.481 kb on - strand, within LRK53_RS06165 at 1415.481 kb on - strand, within LRK53_RS06165 at 1415.481 kb on - strand, within LRK53_RS06165 at 1415.481 kb on - strand, within LRK53_RS06165 at 1415.544 kb on - strand, within LRK53_RS06165 at 1415.675 kb on + strand, within LRK53_RS06165 at 1415.675 kb on + strand, within LRK53_RS06165 at 1415.676 kb on - strand, within LRK53_RS06165 at 1415.676 kb on - strand, within LRK53_RS06165 at 1415.676 kb on - strand, within LRK53_RS06165 at 1415.703 kb on - strand, within LRK53_RS06165 at 1415.703 kb on - strand, within LRK53_RS06165 at 1415.799 kb on + strand, within LRK53_RS06165 at 1415.799 kb on + strand, within LRK53_RS06165 at 1415.799 kb on + strand, within LRK53_RS06165 at 1415.799 kb on + strand, within LRK53_RS06165 at 1415.799 kb on + strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.800 kb on - strand, within LRK53_RS06165 at 1415.802 kb on - strand, within LRK53_RS06165 at 1415.802 kb on - strand, within LRK53_RS06165 at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.948 kb on + strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1415.949 kb on - strand at 1416.059 kb on + strand, within LRK53_RS06170 at 1416.102 kb on + strand, within LRK53_RS06170 at 1416.103 kb on - strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.166 kb on + strand, within LRK53_RS06170 at 1416.167 kb on - strand, within LRK53_RS06170 at 1416.167 kb on - strand, within LRK53_RS06170 at 1416.167 kb on - strand, within LRK53_RS06170 at 1416.167 kb on - strand, within LRK53_RS06170 at 1416.263 kb on - strand, within LRK53_RS06170 at 1416.263 kb on - strand, within LRK53_RS06170 at 1416.319 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.391 kb on + strand, within LRK53_RS06170 at 1416.392 kb on - strand, within LRK53_RS06170 at 1416.392 kb on - strand, within LRK53_RS06170 at 1416.392 kb on - strand, within LRK53_RS06170 at 1416.528 kb on + strand, within LRK53_RS06175 at 1416.528 kb on + strand, within LRK53_RS06175 at 1416.528 kb on + strand, within LRK53_RS06175 at 1416.529 kb on - strand, within LRK53_RS06175 at 1416.529 kb on - strand, within LRK53_RS06175 at 1416.745 kb on - strand at 1416.927 kb on + strand, within LRK53_RS06180 at 1416.927 kb on + strand, within LRK53_RS06180 at 1416.928 kb on - strand, within LRK53_RS06180 at 1416.928 kb on - strand, within LRK53_RS06180 at 1416.933 kb on + strand, within LRK53_RS06180 at 1416.934 kb on - strand, within LRK53_RS06180 at 1416.934 kb on - strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.951 kb on + strand, within LRK53_RS06180 at 1416.952 kb on - strand, within LRK53_RS06180 at 1416.952 kb on - strand, within LRK53_RS06180 at 1416.952 kb on - strand, within LRK53_RS06180 at 1416.952 kb on - strand, within LRK53_RS06180 at 1416.952 kb on - strand, within LRK53_RS06180
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 1,413,730 - LRK53_RS06155 0.23 +0.6 1,413,792 + LRK53_RS06155 0.40 +0.4 1,413,792 + LRK53_RS06155 0.40 -0.8 1,413,792 + LRK53_RS06155 0.40 -1.6 1,413,792 + LRK53_RS06155 0.40 -0.6 1,413,792 + LRK53_RS06155 0.40 -2.3 1,413,792 + LRK53_RS06155 0.40 -0.0 1,413,793 - LRK53_RS06155 0.40 -1.6 1,413,793 - LRK53_RS06155 0.40 -1.1 1,413,793 - LRK53_RS06155 0.40 -0.0 1,413,793 - LRK53_RS06155 0.40 +0.3 1,413,793 - LRK53_RS06155 0.40 -1.8 1,413,793 - LRK53_RS06155 0.40 -1.6 1,413,793 - LRK53_RS06155 0.40 +2.0 1,413,793 - LRK53_RS06155 0.40 -1.2 1,413,793 - LRK53_RS06155 0.40 +0.3 1,413,793 - LRK53_RS06155 0.40 -0.6 1,413,793 - LRK53_RS06155 0.40 +2.6 1,413,793 - LRK53_RS06155 0.40 +2.0 1,413,793 - LRK53_RS06155 0.40 +1.0 1,413,793 - LRK53_RS06155 0.40 -1.8 1,414,181 + LRK53_RS06160 0.28 -1.0 1,414,181 + LRK53_RS06160 0.28 -0.0 1,414,182 - LRK53_RS06160 0.28 -0.0 1,414,586 + -0.3 1,414,586 + +1.0 1,414,587 - +0.6 1,414,587 - +0.3 1,414,587 - +0.6 1,414,587 - +1.0 1,414,587 - -1.3 1,414,589 + -1.2 1,414,589 + +1.0 1,414,589 + -2.5 1,414,589 + -1.6 1,414,589 + -1.2 1,414,658 + +0.0 1,414,659 - +0.0 1,414,659 - +0.4 1,414,659 - +1.0 1,414,663 + +0.0 1,414,823 + -0.6 1,414,823 + -0.6 1,414,824 - +1.0 1,414,824 - +0.2 1,414,824 - -2.2 1,415,129 + LRK53_RS06165 0.32 -0.6 1,415,130 - LRK53_RS06165 0.32 -1.8 1,415,130 - LRK53_RS06165 0.32 -0.6 1,415,189 + LRK53_RS06165 0.37 +0.0 1,415,189 + LRK53_RS06165 0.37 +1.0 1,415,190 - LRK53_RS06165 0.37 -0.3 1,415,190 - LRK53_RS06165 0.37 +0.0 1,415,190 - LRK53_RS06165 0.37 -1.6 1,415,303 + LRK53_RS06165 0.46 -0.9 1,415,303 + LRK53_RS06165 0.46 -0.6 1,415,303 + LRK53_RS06165 0.46 -0.9 1,415,303 + LRK53_RS06165 0.46 +1.0 1,415,303 + LRK53_RS06165 0.46 -0.3 1,415,304 - LRK53_RS06165 0.46 +0.7 1,415,426 + LRK53_RS06165 0.55 -0.3 1,415,426 + LRK53_RS06165 0.55 -1.6 1,415,426 + LRK53_RS06165 0.55 -1.1 1,415,426 + LRK53_RS06165 0.55 +0.0 1,415,426 + LRK53_RS06165 0.55 +2.0 1,415,426 + LRK53_RS06165 0.55 +0.0 1,415,426 + LRK53_RS06165 0.55 +1.0 1,415,427 - LRK53_RS06165 0.55 +0.0 1,415,427 - LRK53_RS06165 0.55 -1.0 1,415,427 - LRK53_RS06165 0.55 -1.3 1,415,427 - LRK53_RS06165 0.55 -0.5 1,415,427 - LRK53_RS06165 0.55 -2.0 1,415,427 - LRK53_RS06165 0.55 -0.2 1,415,438 + LRK53_RS06165 0.56 -0.6 1,415,438 + LRK53_RS06165 0.56 -0.6 1,415,438 + LRK53_RS06165 0.56 -1.8 1,415,439 - LRK53_RS06165 0.56 +1.0 1,415,439 - LRK53_RS06165 0.56 +0.7 1,415,480 + LRK53_RS06165 0.59 -0.6 1,415,480 + LRK53_RS06165 0.59 +1.0 1,415,480 + LRK53_RS06165 0.59 -1.0 1,415,480 + LRK53_RS06165 0.59 +1.8 1,415,480 + LRK53_RS06165 0.59 -1.3 1,415,480 + LRK53_RS06165 0.59 -2.0 1,415,480 + LRK53_RS06165 0.59 +0.0 1,415,480 + LRK53_RS06165 0.59 +1.0 1,415,480 + LRK53_RS06165 0.59 +0.4 1,415,480 + LRK53_RS06165 0.59 +1.0 1,415,480 + LRK53_RS06165 0.59 +0.3 1,415,481 - LRK53_RS06165 0.59 -0.6 1,415,481 - LRK53_RS06165 0.59 -0.9 1,415,481 - LRK53_RS06165 0.59 -0.0 1,415,481 - LRK53_RS06165 0.59 +0.2 1,415,481 - LRK53_RS06165 0.59 -1.2 1,415,544 - LRK53_RS06165 0.64 +1.0 1,415,675 + LRK53_RS06165 0.75 -1.5 1,415,675 + LRK53_RS06165 0.75 -0.6 1,415,676 - LRK53_RS06165 0.75 -0.6 1,415,676 - LRK53_RS06165 0.75 +0.4 1,415,676 - LRK53_RS06165 0.75 +1.0 1,415,703 - LRK53_RS06165 0.77 -0.3 1,415,703 - LRK53_RS06165 0.77 +2.0 1,415,799 + LRK53_RS06165 0.84 -1.3 1,415,799 + LRK53_RS06165 0.84 -2.0 1,415,799 + LRK53_RS06165 0.84 -1.4 1,415,799 + LRK53_RS06165 0.84 +1.6 1,415,799 + LRK53_RS06165 0.84 -0.6 1,415,800 - LRK53_RS06165 0.84 -1.3 1,415,800 - LRK53_RS06165 0.84 +0.4 1,415,800 - LRK53_RS06165 0.84 -0.5 1,415,800 - LRK53_RS06165 0.84 +0.0 1,415,800 - LRK53_RS06165 0.84 +0.0 1,415,800 - LRK53_RS06165 0.84 -1.0 1,415,800 - LRK53_RS06165 0.84 -2.0 1,415,800 - LRK53_RS06165 0.84 +0.0 1,415,802 - LRK53_RS06165 0.85 -1.0 1,415,802 - LRK53_RS06165 0.85 -0.3 1,415,948 + +0.4 1,415,948 + -1.7 1,415,948 + -0.3 1,415,948 + -0.8 1,415,948 + -2.2 1,415,948 + +2.0 1,415,948 + -0.2 1,415,948 + +0.0 1,415,948 + -1.6 1,415,948 + +0.0 1,415,949 - -0.6 1,415,949 - -0.5 1,415,949 - -0.3 1,415,949 - +0.2 1,415,949 - -1.0 1,415,949 - -1.1 1,415,949 - +2.0 1,415,949 - -0.3 1,415,949 - +0.7 1,416,059 + LRK53_RS06170 0.13 -0.6 1,416,102 + LRK53_RS06170 0.22 +0.0 1,416,103 - LRK53_RS06170 0.22 -1.0 1,416,166 + LRK53_RS06170 0.35 -0.4 1,416,166 + LRK53_RS06170 0.35 -1.0 1,416,166 + LRK53_RS06170 0.35 -1.6 1,416,166 + LRK53_RS06170 0.35 +0.0 1,416,166 + LRK53_RS06170 0.35 +1.0 1,416,166 + LRK53_RS06170 0.35 -0.6 1,416,167 - LRK53_RS06170 0.35 -0.6 1,416,167 - LRK53_RS06170 0.35 -1.9 1,416,167 - LRK53_RS06170 0.35 -0.2 1,416,167 - LRK53_RS06170 0.35 +0.0 1,416,263 - LRK53_RS06170 0.55 -0.2 1,416,263 - LRK53_RS06170 0.55 -1.3 1,416,319 + LRK53_RS06170 0.67 -0.3 1,416,391 + LRK53_RS06170 0.81 -0.6 1,416,391 + LRK53_RS06170 0.81 -1.3 1,416,391 + LRK53_RS06170 0.81 -0.9 1,416,391 + LRK53_RS06170 0.81 -0.2 1,416,391 + LRK53_RS06170 0.81 +0.3 1,416,391 + LRK53_RS06170 0.81 +1.0 1,416,391 + LRK53_RS06170 0.81 +1.2 1,416,392 - LRK53_RS06170 0.82 +0.0 1,416,392 - LRK53_RS06170 0.82 -0.8 1,416,392 - LRK53_RS06170 0.82 -0.9 1,416,528 + LRK53_RS06175 0.18 +0.4 1,416,528 + LRK53_RS06175 0.18 +0.1 1,416,528 + LRK53_RS06175 0.18 -1.2 1,416,529 - LRK53_RS06175 0.18 +0.0 1,416,529 - LRK53_RS06175 0.18 -1.0 1,416,745 - +0.7 1,416,927 + LRK53_RS06180 0.39 -1.6 1,416,927 + LRK53_RS06180 0.39 +1.4 1,416,928 - LRK53_RS06180 0.40 +0.4 1,416,928 - LRK53_RS06180 0.40 +0.4 1,416,933 + LRK53_RS06180 0.41 -1.6 1,416,934 - LRK53_RS06180 0.41 +1.0 1,416,934 - LRK53_RS06180 0.41 -0.9 1,416,951 + LRK53_RS06180 0.46 -1.3 1,416,951 + LRK53_RS06180 0.46 +2.0 1,416,951 + LRK53_RS06180 0.46 +1.0 1,416,951 + LRK53_RS06180 0.46 -1.2 1,416,951 + LRK53_RS06180 0.46 +0.6 1,416,951 + LRK53_RS06180 0.46 +2.6 1,416,951 + LRK53_RS06180 0.46 +0.0 1,416,951 + LRK53_RS06180 0.46 +1.0 1,416,952 - LRK53_RS06180 0.46 +1.0 1,416,952 - LRK53_RS06180 0.46 -2.8 1,416,952 - LRK53_RS06180 0.46 -0.3 1,416,952 - LRK53_RS06180 0.46 -0.7 1,416,952 - LRK53_RS06180 0.46 +1.0
Or see this region's nucleotide sequence