Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18990

Experiment: R2A_PIPES with Zinc chloride 5120 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18980 and LRK53_RS18985 are separated by 151 nucleotidesLRK53_RS18985 and LRK53_RS18990 are separated by 82 nucleotidesLRK53_RS18990 and LRK53_RS18995 are separated by 85 nucleotidesLRK53_RS18995 and LRK53_RS19000 are separated by 117 nucleotidesLRK53_RS19000 and LRK53_RS19005 are separated by 85 nucleotides LRK53_RS18980: LRK53_RS18980 - hypothetical protein, at 188,716 to 189,102 _RS18980 LRK53_RS18985: LRK53_RS18985 - hypothetical protein, at 189,254 to 189,619 _RS18985 LRK53_RS18990: LRK53_RS18990 - hypothetical protein, at 189,702 to 190,061 _RS18990 LRK53_RS18995: LRK53_RS18995 - hypothetical protein, at 190,147 to 190,500 _RS18995 LRK53_RS19000: LRK53_RS19000 - hypothetical protein, at 190,618 to 190,953 _RS19000 LRK53_RS19005: LRK53_RS19005 - phosphoadenosine phosphosulfate reductase family protein, at 191,039 to 192,148 _RS19005 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.798 kb on - strand, within LRK53_RS18980at 188.798 kb on - strand, within LRK53_RS18980at 188.894 kb on - strand, within LRK53_RS18980at 188.905 kb on + strand, within LRK53_RS18980at 189.029 kb on + strand, within LRK53_RS18980at 189.148 kb on - strandat 189.396 kb on + strand, within LRK53_RS18985at 189.396 kb on + strand, within LRK53_RS18985at 189.396 kb on + strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.397 kb on - strand, within LRK53_RS18985at 189.518 kb on + strand, within LRK53_RS18985at 189.518 kb on + strand, within LRK53_RS18985at 189.519 kb on - strand, within LRK53_RS18985at 189.519 kb on - strand, within LRK53_RS18985at 189.519 kb on - strand, within LRK53_RS18985at 189.519 kb on - strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.521 kb on + strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.522 kb on - strand, within LRK53_RS18985at 189.753 kb on + strand, within LRK53_RS18990at 189.753 kb on + strand, within LRK53_RS18990at 189.753 kb on + strand, within LRK53_RS18990at 189.753 kb on + strand, within LRK53_RS18990at 189.754 kb on - strand, within LRK53_RS18990at 189.754 kb on - strand, within LRK53_RS18990at 189.756 kb on + strand, within LRK53_RS18990at 189.756 kb on + strand, within LRK53_RS18990at 189.756 kb on + strand, within LRK53_RS18990at 189.756 kb on + strand, within LRK53_RS18990at 189.757 kb on - strand, within LRK53_RS18990at 189.757 kb on - strand, within LRK53_RS18990at 189.757 kb on - strand, within LRK53_RS18990at 189.757 kb on - strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.921 kb on + strand, within LRK53_RS18990at 189.922 kb on - strand, within LRK53_RS18990at 189.922 kb on - strand, within LRK53_RS18990at 189.922 kb on - strand, within LRK53_RS18990at 189.922 kb on - strand, within LRK53_RS18990at 189.922 kb on - strand, within LRK53_RS18990at 189.966 kb on + strand, within LRK53_RS18990at 189.966 kb on + strand, within LRK53_RS18990at 189.967 kb on - strand, within LRK53_RS18990at 189.967 kb on - strand, within LRK53_RS18990at 189.982 kb on - strand, within LRK53_RS18990at 189.982 kb on - strand, within LRK53_RS18990at 189.982 kb on - strand, within LRK53_RS18990at 189.982 kb on - strand, within LRK53_RS18990at 189.982 kb on - strand, within LRK53_RS18990at 190.059 kb on + strandat 190.059 kb on + strandat 190.059 kb on + strandat 190.059 kb on + strandat 190.060 kb on - strandat 190.060 kb on - strandat 190.060 kb on - strandat 190.110 kb on + strandat 190.111 kb on - strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.114 kb on + strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.115 kb on - strandat 190.210 kb on + strand, within LRK53_RS18995at 190.210 kb on + strand, within LRK53_RS18995at 190.295 kb on + strand, within LRK53_RS18995at 190.295 kb on + strand, within LRK53_RS18995at 190.412 kb on - strand, within LRK53_RS18995at 190.517 kb on + strandat 190.517 kb on + strandat 190.517 kb on + strandat 190.664 kb on + strand, within LRK53_RS19000at 190.665 kb on - strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.882 kb on + strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.883 kb on - strand, within LRK53_RS19000at 190.884 kb on + strand, within LRK53_RS19000at 190.885 kb on - strand, within LRK53_RS19000at 190.885 kb on - strand, within LRK53_RS19000at 190.885 kb on - strand, within LRK53_RS19000at 190.885 kb on - strand, within LRK53_RS19000at 190.885 kb on - strand, within LRK53_RS19000at 190.951 kb on + strandat 190.952 kb on - strandat 190.952 kb on - strandat 190.952 kb on - strandat 191.001 kb on - strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.038 kb on + strandat 191.039 kb on - strandat 191.039 kb on - strandat 191.039 kb on - strandat 191.039 kb on - strandat 191.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Zinc chloride 5120 uM
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188,798 - LRK53_RS18980 0.21 -0.2
188,798 - LRK53_RS18980 0.21 +0.4
188,894 - LRK53_RS18980 0.46 -0.8
188,905 + LRK53_RS18980 0.49 -0.3
189,029 + LRK53_RS18980 0.81 -2.4
189,148 - -1.3
189,396 + LRK53_RS18985 0.39 -1.0
189,396 + LRK53_RS18985 0.39 -0.8
189,396 + LRK53_RS18985 0.39 -2.0
189,397 - LRK53_RS18985 0.39 -1.4
189,397 - LRK53_RS18985 0.39 +0.0
189,397 - LRK53_RS18985 0.39 -2.0
189,397 - LRK53_RS18985 0.39 -1.0
189,397 - LRK53_RS18985 0.39 +2.6
189,397 - LRK53_RS18985 0.39 -1.6
189,518 + LRK53_RS18985 0.72 -1.8
189,518 + LRK53_RS18985 0.72 +0.4
189,519 - LRK53_RS18985 0.72 +0.0
189,519 - LRK53_RS18985 0.72 +1.0
189,519 - LRK53_RS18985 0.72 +0.0
189,519 - LRK53_RS18985 0.72 -2.0
189,521 + LRK53_RS18985 0.73 +0.0
189,521 + LRK53_RS18985 0.73 -0.3
189,521 + LRK53_RS18985 0.73 +0.2
189,521 + LRK53_RS18985 0.73 -1.4
189,521 + LRK53_RS18985 0.73 -0.3
189,521 + LRK53_RS18985 0.73 -1.7
189,521 + LRK53_RS18985 0.73 +0.0
189,521 + LRK53_RS18985 0.73 -1.3
189,521 + LRK53_RS18985 0.73 -2.4
189,521 + LRK53_RS18985 0.73 -2.8
189,522 - LRK53_RS18985 0.73 -0.7
189,522 - LRK53_RS18985 0.73 -0.7
189,522 - LRK53_RS18985 0.73 -1.0
189,522 - LRK53_RS18985 0.73 -1.3
189,522 - LRK53_RS18985 0.73 -1.1
189,522 - LRK53_RS18985 0.73 -2.1
189,522 - LRK53_RS18985 0.73 +0.3
189,522 - LRK53_RS18985 0.73 -1.8
189,522 - LRK53_RS18985 0.73 +0.0
189,522 - LRK53_RS18985 0.73 -1.4
189,522 - LRK53_RS18985 0.73 -0.3
189,522 - LRK53_RS18985 0.73 -1.8
189,522 - LRK53_RS18985 0.73 +0.0
189,753 + LRK53_RS18990 0.14 -0.8
189,753 + LRK53_RS18990 0.14 -1.0
189,753 + LRK53_RS18990 0.14 -1.1
189,753 + LRK53_RS18990 0.14 +0.2
189,754 - LRK53_RS18990 0.14 +0.0
189,754 - LRK53_RS18990 0.14 -0.6
189,756 + LRK53_RS18990 0.15 -0.4
189,756 + LRK53_RS18990 0.15 +0.3
189,756 + LRK53_RS18990 0.15 -0.6
189,756 + LRK53_RS18990 0.15 -2.0
189,757 - LRK53_RS18990 0.15 -2.0
189,757 - LRK53_RS18990 0.15 -0.8
189,757 - LRK53_RS18990 0.15 -2.1
189,757 - LRK53_RS18990 0.15 +0.0
189,921 + LRK53_RS18990 0.61 -0.4
189,921 + LRK53_RS18990 0.61 -0.6
189,921 + LRK53_RS18990 0.61 +0.0
189,921 + LRK53_RS18990 0.61 -0.3
189,921 + LRK53_RS18990 0.61 +0.4
189,921 + LRK53_RS18990 0.61 -1.5
189,921 + LRK53_RS18990 0.61 +1.0
189,921 + LRK53_RS18990 0.61 -1.3
189,922 - LRK53_RS18990 0.61 -2.0
189,922 - LRK53_RS18990 0.61 -1.6
189,922 - LRK53_RS18990 0.61 +2.6
189,922 - LRK53_RS18990 0.61 -1.6
189,922 - LRK53_RS18990 0.61 -0.9
189,966 + LRK53_RS18990 0.73 -2.6
189,966 + LRK53_RS18990 0.73 -1.0
189,967 - LRK53_RS18990 0.74 -2.0
189,967 - LRK53_RS18990 0.74 -1.3
189,982 - LRK53_RS18990 0.78 -1.2
189,982 - LRK53_RS18990 0.78 +0.0
189,982 - LRK53_RS18990 0.78 -0.8
189,982 - LRK53_RS18990 0.78 -2.9
189,982 - LRK53_RS18990 0.78 -0.9
190,059 + -2.8
190,059 + -0.6
190,059 + -1.0
190,059 + -2.9
190,060 - -0.3
190,060 - -1.0
190,060 - +0.0
190,110 + -0.5
190,111 - -2.1
190,114 + -0.6
190,114 + -0.7
190,114 + -1.7
190,114 + -1.3
190,114 + -3.0
190,114 + -0.6
190,114 + -1.0
190,115 - -0.7
190,115 - -1.0
190,115 - +0.4
190,115 - -0.7
190,115 - -0.3
190,115 - +0.4
190,115 - +0.4
190,115 - +0.4
190,115 - -1.6
190,115 - -2.3
190,115 - -2.8
190,115 - -0.3
190,115 - -1.3
190,115 - +1.0
190,115 - -0.1
190,115 - -0.8
190,115 - +0.3
190,115 - -1.1
190,115 - -1.3
190,115 - -1.0
190,210 + LRK53_RS18995 0.18 -0.3
190,210 + LRK53_RS18995 0.18 -2.4
190,295 + LRK53_RS18995 0.42 +0.4
190,295 + LRK53_RS18995 0.42 -0.4
190,412 - LRK53_RS18995 0.75 -1.3
190,517 + -0.3
190,517 + +0.8
190,517 + -1.0
190,664 + LRK53_RS19000 0.14 +1.0
190,665 - LRK53_RS19000 0.14 -1.6
190,882 + LRK53_RS19000 0.79 -0.6
190,882 + LRK53_RS19000 0.79 -2.2
190,882 + LRK53_RS19000 0.79 +0.0
190,882 + LRK53_RS19000 0.79 -1.6
190,882 + LRK53_RS19000 0.79 -1.8
190,882 + LRK53_RS19000 0.79 -2.0
190,882 + LRK53_RS19000 0.79 -1.0
190,882 + LRK53_RS19000 0.79 -0.6
190,883 - LRK53_RS19000 0.79 +0.0
190,883 - LRK53_RS19000 0.79 -0.5
190,883 - LRK53_RS19000 0.79 -0.6
190,883 - LRK53_RS19000 0.79 -1.8
190,883 - LRK53_RS19000 0.79 -1.2
190,883 - LRK53_RS19000 0.79 -1.1
190,883 - LRK53_RS19000 0.79 -0.7
190,884 + LRK53_RS19000 0.79 +0.0
190,885 - LRK53_RS19000 0.79 -1.0
190,885 - LRK53_RS19000 0.79 +0.0
190,885 - LRK53_RS19000 0.79 -0.6
190,885 - LRK53_RS19000 0.79 -0.6
190,885 - LRK53_RS19000 0.79 +0.0
190,951 + -1.0
190,952 - +0.0
190,952 - -0.3
190,952 - -0.8
191,001 - +0.0
191,038 + +0.0
191,038 + +0.2
191,038 + -0.2
191,038 + -1.1
191,038 + +0.2
191,038 + -0.6
191,038 + +0.0
191,038 + +1.0
191,039 - -1.0
191,039 - -0.2
191,039 - -0.4
191,039 - +0.4
191,039 - +1.7

Or see this region's nucleotide sequence