Strain Fitness in Escherichia coli ECRC98 around JDDGAC_27765

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_27750 and JDDGAC_27755 overlap by 4 nucleotidesJDDGAC_27755 and JDDGAC_27760 are separated by 176 nucleotidesJDDGAC_27760 and JDDGAC_27765 are separated by 43 nucleotidesJDDGAC_27765 and ybcN are separated by 188 nucleotidesybcN and ninE overlap by 1 nucleotidesninE and ybcO overlap by 8 nucleotides JDDGAC_27750: JDDGAC_27750 - Replication protein P, at 5,329,238 to 5,329,939 _27750 JDDGAC_27755: JDDGAC_27755 - protein ren, at 5,329,936 to 5,330,220 _27755 JDDGAC_27760: JDDGAC_27760 - hypothetical protein, at 5,330,397 to 5,330,645 _27760 JDDGAC_27765: JDDGAC_27765 - hypothetical protein, at 5,330,689 to 5,330,970 _27765 JDDGAC_27770: ybcN - DNA base-flipping protein YbcN, at 5,331,159 to 5,331,614 ybcN JDDGAC_27775: ninE - Protein ninE, at 5,331,614 to 5,331,784 ninE JDDGAC_27780: ybcO - Putative nuclease YbcO, at 5,331,777 to 5,332,067 ybcO Position (kb) 5330 5331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5329.697 kb on + strand, within JDDGAC_27750at 5329.956 kb on + strandat 5329.977 kb on + strand, within JDDGAC_27755at 5329.977 kb on + strand, within JDDGAC_27755at 5329.977 kb on + strand, within JDDGAC_27755at 5329.980 kb on + strand, within JDDGAC_27755at 5329.980 kb on + strand, within JDDGAC_27755at 5330.034 kb on - strand, within JDDGAC_27755at 5330.034 kb on - strand, within JDDGAC_27755at 5330.086 kb on - strand, within JDDGAC_27755at 5330.086 kb on - strand, within JDDGAC_27755at 5330.207 kb on + strandat 5330.208 kb on - strandat 5330.210 kb on - strandat 5330.218 kb on + strandat 5330.219 kb on - strandat 5330.267 kb on - strandat 5330.267 kb on - strandat 5330.309 kb on + strandat 5330.309 kb on + strandat 5330.365 kb on + strandat 5330.365 kb on + strandat 5330.365 kb on + strandat 5330.368 kb on - strandat 5330.378 kb on + strandat 5330.378 kb on + strandat 5330.378 kb on + strandat 5330.378 kb on + strandat 5330.379 kb on - strandat 5330.408 kb on - strandat 5330.436 kb on - strand, within JDDGAC_27760at 5330.447 kb on + strand, within JDDGAC_27760at 5330.448 kb on - strand, within JDDGAC_27760at 5330.512 kb on - strand, within JDDGAC_27760at 5330.555 kb on - strand, within JDDGAC_27760at 5330.566 kb on + strand, within JDDGAC_27760at 5330.595 kb on + strand, within JDDGAC_27760at 5330.596 kb on - strand, within JDDGAC_27760at 5330.597 kb on + strand, within JDDGAC_27760at 5330.597 kb on + strand, within JDDGAC_27760at 5330.597 kb on + strand, within JDDGAC_27760at 5330.618 kb on - strand, within JDDGAC_27760at 5330.662 kb on + strandat 5330.664 kb on + strandat 5330.698 kb on + strandat 5330.733 kb on - strand, within JDDGAC_27765at 5330.733 kb on - strand, within JDDGAC_27765at 5330.879 kb on - strand, within JDDGAC_27765at 5330.881 kb on + strand, within JDDGAC_27765at 5330.888 kb on + strand, within JDDGAC_27765at 5330.888 kb on + strand, within JDDGAC_27765at 5330.888 kb on + strand, within JDDGAC_27765at 5330.888 kb on + strand, within JDDGAC_27765at 5330.903 kb on + strand, within JDDGAC_27765at 5330.941 kb on + strand, within JDDGAC_27765at 5330.971 kb on + strandat 5331.002 kb on + strandat 5331.060 kb on + strandat 5331.060 kb on + strandat 5331.070 kb on + strandat 5331.071 kb on - strandat 5331.071 kb on - strandat 5331.232 kb on - strand, within ybcNat 5331.266 kb on + strand, within ybcNat 5331.267 kb on - strand, within ybcNat 5331.267 kb on - strand, within ybcN

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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5,329,697 + JDDGAC_27750 0.65 -0.5
5,329,956 + -0.4
5,329,977 + JDDGAC_27755 0.14 +3.6
5,329,977 + JDDGAC_27755 0.14 -1.8
5,329,977 + JDDGAC_27755 0.14 -1.8
5,329,980 + JDDGAC_27755 0.15 -0.2
5,329,980 + JDDGAC_27755 0.15 -1.3
5,330,034 - JDDGAC_27755 0.34 +2.2
5,330,034 - JDDGAC_27755 0.34 +1.6
5,330,086 - JDDGAC_27755 0.53 -0.9
5,330,086 - JDDGAC_27755 0.53 +0.3
5,330,207 + -1.4
5,330,208 - +0.2
5,330,210 - -0.3
5,330,218 + -0.1
5,330,219 - +0.3
5,330,267 - +0.6
5,330,267 - +2.1
5,330,309 + -0.0
5,330,309 + -1.2
5,330,365 + -2.8
5,330,365 + -0.9
5,330,365 + -0.6
5,330,368 - +0.5
5,330,378 + +0.2
5,330,378 + +0.5
5,330,378 + +1.5
5,330,378 + +0.1
5,330,379 - +0.7
5,330,408 - -0.3
5,330,436 - JDDGAC_27760 0.16 -0.5
5,330,447 + JDDGAC_27760 0.20 -0.3
5,330,448 - JDDGAC_27760 0.20 +0.2
5,330,512 - JDDGAC_27760 0.46 +2.3
5,330,555 - JDDGAC_27760 0.63 -0.1
5,330,566 + JDDGAC_27760 0.68 -1.0
5,330,595 + JDDGAC_27760 0.80 -0.6
5,330,596 - JDDGAC_27760 0.80 +0.7
5,330,597 + JDDGAC_27760 0.80 +1.7
5,330,597 + JDDGAC_27760 0.80 +2.8
5,330,597 + JDDGAC_27760 0.80 -0.4
5,330,618 - JDDGAC_27760 0.89 -0.5
5,330,662 + -0.3
5,330,664 + -0.2
5,330,698 + -0.1
5,330,733 - JDDGAC_27765 0.16 -1.3
5,330,733 - JDDGAC_27765 0.16 +1.0
5,330,879 - JDDGAC_27765 0.67 +0.9
5,330,881 + JDDGAC_27765 0.68 -1.1
5,330,888 + JDDGAC_27765 0.71 -1.2
5,330,888 + JDDGAC_27765 0.71 -0.1
5,330,888 + JDDGAC_27765 0.71 -0.8
5,330,888 + JDDGAC_27765 0.71 -1.6
5,330,903 + JDDGAC_27765 0.76 -1.8
5,330,941 + JDDGAC_27765 0.89 -0.8
5,330,971 + +0.1
5,331,002 + +1.5
5,331,060 + -1.1
5,331,060 + -1.6
5,331,070 + +0.1
5,331,071 - -1.2
5,331,071 - +0.4
5,331,232 - ybcN JDDGAC_27770 0.16 +0.1
5,331,266 + ybcN JDDGAC_27770 0.23 -0.4
5,331,267 - ybcN JDDGAC_27770 0.24 +1.5
5,331,267 - ybcN JDDGAC_27770 0.24 -1.4

Or see this region's nucleotide sequence