Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoG and nuoH overlap by 4 nucleotides nuoH and nuoI are separated by 14 nucleotides nuoI and nuoJ are separated by 11 nucleotides
JDDGAC_26830: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 5,135,935 to 5,138,661
nuoG
JDDGAC_26835: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 5,138,658 to 5,139,635
nuoH
JDDGAC_26840: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 5,139,650 to 5,140,192
nuoI
JDDGAC_26845: nuoJ - NADH-quinone oxidoreductase subunit J, at 5,140,204 to 5,140,758
nuoJ
Position (kb) 5138
5139
5140 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5137.793 kb on + strand, within nuoG at 5137.834 kb on + strand, within nuoG at 5137.834 kb on + strand, within nuoG at 5137.847 kb on - strand, within nuoG at 5137.850 kb on - strand, within nuoG at 5137.949 kb on + strand, within nuoG at 5137.949 kb on + strand, within nuoG at 5137.950 kb on - strand, within nuoG at 5138.088 kb on + strand, within nuoG at 5138.317 kb on + strand, within nuoG at 5138.318 kb on - strand, within nuoG at 5138.436 kb on + strand at 5138.449 kb on + strand at 5138.514 kb on + strand at 5138.518 kb on + strand at 5138.596 kb on - strand at 5138.805 kb on - strand, within nuoH at 5138.931 kb on - strand, within nuoH at 5139.124 kb on - strand, within nuoH at 5139.381 kb on + strand, within nuoH at 5139.382 kb on - strand, within nuoH at 5139.765 kb on - strand, within nuoI at 5139.791 kb on - strand, within nuoI at 5139.838 kb on + strand, within nuoI at 5139.996 kb on + strand, within nuoI at 5140.022 kb on + strand, within nuoI at 5140.091 kb on + strand, within nuoI at 5140.091 kb on + strand, within nuoI at 5140.093 kb on + strand, within nuoI at 5140.093 kb on + strand, within nuoI at 5140.093 kb on + strand, within nuoI at 5140.094 kb on - strand, within nuoI at 5140.219 kb on + strand at 5140.242 kb on - strand at 5140.303 kb on - strand, within nuoJ at 5140.349 kb on - strand, within nuoJ at 5140.349 kb on - strand, within nuoJ at 5140.392 kb on + strand, within nuoJ at 5140.392 kb on + strand, within nuoJ at 5140.529 kb on - strand, within nuoJ at 5140.597 kb on - strand, within nuoJ at 5140.616 kb on + strand, within nuoJ at 5140.617 kb on - strand, within nuoJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,137,793 + nuoG JDDGAC_26830 0.68 -0.5 5,137,834 + nuoG JDDGAC_26830 0.70 +0.9 5,137,834 + nuoG JDDGAC_26830 0.70 +2.3 5,137,847 - nuoG JDDGAC_26830 0.70 +0.1 5,137,850 - nuoG JDDGAC_26830 0.70 +0.7 5,137,949 + nuoG JDDGAC_26830 0.74 -0.5 5,137,949 + nuoG JDDGAC_26830 0.74 +0.9 5,137,950 - nuoG JDDGAC_26830 0.74 -0.7 5,138,088 + nuoG JDDGAC_26830 0.79 +0.9 5,138,317 + nuoG JDDGAC_26830 0.87 +0.0 5,138,318 - nuoG JDDGAC_26830 0.87 -0.1 5,138,436 + +2.5 5,138,449 + +0.5 5,138,514 + +0.5 5,138,518 + -0.4 5,138,596 - +0.9 5,138,805 - nuoH JDDGAC_26835 0.15 +1.5 5,138,931 - nuoH JDDGAC_26835 0.28 +0.9 5,139,124 - nuoH JDDGAC_26835 0.48 +3.5 5,139,381 + nuoH JDDGAC_26835 0.74 +0.8 5,139,382 - nuoH JDDGAC_26835 0.74 +0.1 5,139,765 - nuoI JDDGAC_26840 0.21 +2.7 5,139,791 - nuoI JDDGAC_26840 0.26 +0.7 5,139,838 + nuoI JDDGAC_26840 0.35 +1.6 5,139,996 + nuoI JDDGAC_26840 0.64 -0.3 5,140,022 + nuoI JDDGAC_26840 0.69 -0.3 5,140,091 + nuoI JDDGAC_26840 0.81 -0.4 5,140,091 + nuoI JDDGAC_26840 0.81 +0.9 5,140,093 + nuoI JDDGAC_26840 0.82 -0.3 5,140,093 + nuoI JDDGAC_26840 0.82 -0.0 5,140,093 + nuoI JDDGAC_26840 0.82 -2.0 5,140,094 - nuoI JDDGAC_26840 0.82 +1.2 5,140,219 + +0.3 5,140,242 - -2.4 5,140,303 - nuoJ JDDGAC_26845 0.18 +1.5 5,140,349 - nuoJ JDDGAC_26845 0.26 +0.3 5,140,349 - nuoJ JDDGAC_26845 0.26 +1.0 5,140,392 + nuoJ JDDGAC_26845 0.34 +1.2 5,140,392 + nuoJ JDDGAC_26845 0.34 -0.0 5,140,529 - nuoJ JDDGAC_26845 0.59 -0.6 5,140,597 - nuoJ JDDGAC_26845 0.71 +0.9 5,140,616 + nuoJ JDDGAC_26845 0.74 +2.3 5,140,617 - nuoJ JDDGAC_26845 0.74 +1.3
Or see this region's nucleotide sequence