Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25590

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_25575 and Arg_trna are separated by 203 nucleotidesArg_trna and JDDGAC_25585 are separated by 427 nucleotidesJDDGAC_25585 and JDDGAC_25590 are separated by 14 nucleotidesJDDGAC_25590 and JDDGAC_25595 overlap by 4 nucleotidesJDDGAC_25595 and JDDGAC_25600 are separated by 2 nucleotides JDDGAC_25575: JDDGAC_25575 - Phage protein (N4 Gp49/phage Sf6 gene 66) family, at 4,888,275 to 4,888,646 _25575 JDDGAC_25580: Arg_trna - tRNA-Arg(tct), at 4,888,850 to 4,888,926 _trna JDDGAC_25585: JDDGAC_25585 - hypothetical protein, at 4,889,354 to 4,889,560 _25585 JDDGAC_25590: JDDGAC_25590 - Head to tail connecting protein, at 4,889,575 to 4,891,254 _25590 JDDGAC_25595: JDDGAC_25595 - Phage protein, at 4,891,251 to 4,891,547 _25595 JDDGAC_25600: JDDGAC_25600 - peptidase, at 4,891,550 to 4,892,245 _25600 Position (kb) 4889 4890 4891 4892Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4888.575 kb on - strand, within JDDGAC_25575at 4888.587 kb on - strand, within JDDGAC_25575at 4888.647 kb on - strandat 4888.647 kb on - strandat 4888.647 kb on - strandat 4888.705 kb on + strandat 4888.705 kb on + strandat 4888.706 kb on - strandat 4888.722 kb on + strandat 4888.779 kb on + strandat 4888.779 kb on + strandat 4888.780 kb on - strandat 4888.780 kb on - strandat 4888.889 kb on + strand, within Arg_trnaat 4888.918 kb on + strand, within Arg_trnaat 4888.979 kb on - strandat 4888.996 kb on + strandat 4888.997 kb on - strandat 4888.997 kb on - strandat 4889.161 kb on - strandat 4889.353 kb on + strandat 4889.353 kb on + strandat 4889.353 kb on + strandat 4889.353 kb on + strandat 4889.366 kb on - strandat 4889.483 kb on - strand, within JDDGAC_25585at 4889.488 kb on + strand, within JDDGAC_25585at 4889.531 kb on - strand, within JDDGAC_25585at 4889.539 kb on + strand, within JDDGAC_25585at 4889.589 kb on + strandat 4889.589 kb on + strandat 4889.671 kb on + strandat 4889.672 kb on - strandat 4889.672 kb on - strandat 4889.733 kb on + strandat 4889.734 kb on - strandat 4889.743 kb on - strand, within JDDGAC_25590at 4889.871 kb on + strand, within JDDGAC_25590at 4889.910 kb on + strand, within JDDGAC_25590at 4889.910 kb on + strand, within JDDGAC_25590at 4889.911 kb on - strand, within JDDGAC_25590at 4889.919 kb on + strand, within JDDGAC_25590at 4889.952 kb on - strand, within JDDGAC_25590at 4889.953 kb on + strand, within JDDGAC_25590at 4889.971 kb on + strand, within JDDGAC_25590at 4889.971 kb on + strand, within JDDGAC_25590at 4889.971 kb on + strand, within JDDGAC_25590at 4889.971 kb on + strand, within JDDGAC_25590at 4889.972 kb on - strand, within JDDGAC_25590at 4889.972 kb on - strand, within JDDGAC_25590at 4890.021 kb on + strand, within JDDGAC_25590at 4890.021 kb on + strand, within JDDGAC_25590at 4890.021 kb on + strand, within JDDGAC_25590at 4890.022 kb on - strand, within JDDGAC_25590at 4890.047 kb on - strand, within JDDGAC_25590at 4890.049 kb on + strand, within JDDGAC_25590at 4890.049 kb on + strand, within JDDGAC_25590at 4890.050 kb on - strand, within JDDGAC_25590at 4890.057 kb on + strand, within JDDGAC_25590at 4890.058 kb on - strand, within JDDGAC_25590at 4890.103 kb on - strand, within JDDGAC_25590at 4890.141 kb on + strand, within JDDGAC_25590at 4890.141 kb on + strand, within JDDGAC_25590at 4890.184 kb on + strand, within JDDGAC_25590at 4890.185 kb on - strand, within JDDGAC_25590at 4890.185 kb on - strand, within JDDGAC_25590at 4890.237 kb on + strand, within JDDGAC_25590at 4890.237 kb on + strand, within JDDGAC_25590at 4890.238 kb on - strand, within JDDGAC_25590at 4890.281 kb on - strand, within JDDGAC_25590at 4890.283 kb on + strand, within JDDGAC_25590at 4890.345 kb on + strand, within JDDGAC_25590at 4890.423 kb on + strand, within JDDGAC_25590at 4890.469 kb on - strand, within JDDGAC_25590at 4890.547 kb on + strand, within JDDGAC_25590at 4890.547 kb on + strand, within JDDGAC_25590at 4890.547 kb on + strand, within JDDGAC_25590at 4890.547 kb on + strand, within JDDGAC_25590at 4890.548 kb on - strand, within JDDGAC_25590at 4890.548 kb on - strand, within JDDGAC_25590at 4890.548 kb on - strand, within JDDGAC_25590at 4890.589 kb on + strand, within JDDGAC_25590at 4890.590 kb on - strand, within JDDGAC_25590at 4890.590 kb on - strand, within JDDGAC_25590at 4890.700 kb on - strand, within JDDGAC_25590at 4890.796 kb on - strand, within JDDGAC_25590at 4890.893 kb on - strand, within JDDGAC_25590at 4890.948 kb on + strand, within JDDGAC_25590at 4890.948 kb on + strand, within JDDGAC_25590at 4891.038 kb on + strand, within JDDGAC_25590at 4891.038 kb on + strand, within JDDGAC_25590at 4891.039 kb on - strand, within JDDGAC_25590at 4891.039 kb on - strand, within JDDGAC_25590at 4891.039 kb on - strand, within JDDGAC_25590at 4891.227 kb on + strandat 4891.261 kb on - strandat 4891.442 kb on + strand, within JDDGAC_25595at 4891.442 kb on + strand, within JDDGAC_25595at 4891.443 kb on - strand, within JDDGAC_25595at 4891.443 kb on - strand, within JDDGAC_25595at 4891.558 kb on - strandat 4891.614 kb on + strandat 4891.614 kb on + strandat 4891.615 kb on - strandat 4891.615 kb on - strandat 4891.615 kb on - strandat 4891.615 kb on - strandat 4891.696 kb on + strand, within JDDGAC_25600at 4891.697 kb on - strand, within JDDGAC_25600at 4891.884 kb on + strand, within JDDGAC_25600at 4891.884 kb on + strand, within JDDGAC_25600at 4891.884 kb on + strand, within JDDGAC_25600at 4891.925 kb on + strand, within JDDGAC_25600at 4892.051 kb on - strand, within JDDGAC_25600at 4892.126 kb on - strand, within JDDGAC_25600at 4892.215 kb on + strandat 4892.234 kb on + strandat 4892.243 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,888,575 - JDDGAC_25575 0.81 +0.5
4,888,587 - JDDGAC_25575 0.84 +1.1
4,888,647 - +2.1
4,888,647 - +1.2
4,888,647 - +1.6
4,888,705 + +1.0
4,888,705 + +0.8
4,888,706 - +1.9
4,888,722 + +1.9
4,888,779 + -0.2
4,888,779 + +3.7
4,888,780 - +0.9
4,888,780 - +2.5
4,888,889 + Arg_trna JDDGAC_25580 0.51 +0.0
4,888,918 + Arg_trna JDDGAC_25580 0.88 +1.1
4,888,979 - +2.9
4,888,996 + +2.3
4,888,997 - +1.6
4,888,997 - +0.4
4,889,161 - +2.2
4,889,353 + +1.2
4,889,353 + +2.0
4,889,353 + +1.7
4,889,353 + -0.6
4,889,366 - +3.3
4,889,483 - JDDGAC_25585 0.62 +1.7
4,889,488 + JDDGAC_25585 0.65 -0.3
4,889,531 - JDDGAC_25585 0.86 +0.4
4,889,539 + JDDGAC_25585 0.89 +1.1
4,889,589 + +2.4
4,889,589 + +2.5
4,889,671 + +0.7
4,889,672 - +0.8
4,889,672 - +1.4
4,889,733 + +0.8
4,889,734 - -0.2
4,889,743 - JDDGAC_25590 0.10 +1.4
4,889,871 + JDDGAC_25590 0.18 +0.8
4,889,910 + JDDGAC_25590 0.20 +2.4
4,889,910 + JDDGAC_25590 0.20 +1.0
4,889,911 - JDDGAC_25590 0.20 +0.1
4,889,919 + JDDGAC_25590 0.20 +0.4
4,889,952 - JDDGAC_25590 0.22 +0.3
4,889,953 + JDDGAC_25590 0.23 +0.3
4,889,971 + JDDGAC_25590 0.24 +2.0
4,889,971 + JDDGAC_25590 0.24 +1.9
4,889,971 + JDDGAC_25590 0.24 -0.6
4,889,971 + JDDGAC_25590 0.24 +2.2
4,889,972 - JDDGAC_25590 0.24 +1.6
4,889,972 - JDDGAC_25590 0.24 +1.4
4,890,021 + JDDGAC_25590 0.27 +2.4
4,890,021 + JDDGAC_25590 0.27 -0.5
4,890,021 + JDDGAC_25590 0.27 +2.7
4,890,022 - JDDGAC_25590 0.27 +1.4
4,890,047 - JDDGAC_25590 0.28 +1.0
4,890,049 + JDDGAC_25590 0.28 +1.9
4,890,049 + JDDGAC_25590 0.28 +1.7
4,890,050 - JDDGAC_25590 0.28 -0.2
4,890,057 + JDDGAC_25590 0.29 +1.8
4,890,058 - JDDGAC_25590 0.29 +1.4
4,890,103 - JDDGAC_25590 0.31 +1.5
4,890,141 + JDDGAC_25590 0.34 +0.6
4,890,141 + JDDGAC_25590 0.34 -0.7
4,890,184 + JDDGAC_25590 0.36 -0.1
4,890,185 - JDDGAC_25590 0.36 +0.7
4,890,185 - JDDGAC_25590 0.36 +1.1
4,890,237 + JDDGAC_25590 0.39 +1.0
4,890,237 + JDDGAC_25590 0.39 +2.1
4,890,238 - JDDGAC_25590 0.39 +0.7
4,890,281 - JDDGAC_25590 0.42 +0.9
4,890,283 + JDDGAC_25590 0.42 +1.8
4,890,345 + JDDGAC_25590 0.46 +2.8
4,890,423 + JDDGAC_25590 0.50 +2.3
4,890,469 - JDDGAC_25590 0.53 +1.6
4,890,547 + JDDGAC_25590 0.58 +0.1
4,890,547 + JDDGAC_25590 0.58 +2.7
4,890,547 + JDDGAC_25590 0.58 +5.0
4,890,547 + JDDGAC_25590 0.58 +1.0
4,890,548 - JDDGAC_25590 0.58 -1.0
4,890,548 - JDDGAC_25590 0.58 +1.6
4,890,548 - JDDGAC_25590 0.58 +1.6
4,890,589 + JDDGAC_25590 0.60 +2.4
4,890,590 - JDDGAC_25590 0.60 +3.3
4,890,590 - JDDGAC_25590 0.60 +0.8
4,890,700 - JDDGAC_25590 0.67 +1.2
4,890,796 - JDDGAC_25590 0.73 +1.2
4,890,893 - JDDGAC_25590 0.78 +1.7
4,890,948 + JDDGAC_25590 0.82 +0.7
4,890,948 + JDDGAC_25590 0.82 +0.4
4,891,038 + JDDGAC_25590 0.87 +3.6
4,891,038 + JDDGAC_25590 0.87 -1.5
4,891,039 - JDDGAC_25590 0.87 +1.3
4,891,039 - JDDGAC_25590 0.87 +1.7
4,891,039 - JDDGAC_25590 0.87 +0.9
4,891,227 + -0.9
4,891,261 - +0.7
4,891,442 + JDDGAC_25595 0.64 +2.3
4,891,442 + JDDGAC_25595 0.64 +1.4
4,891,443 - JDDGAC_25595 0.65 +0.4
4,891,443 - JDDGAC_25595 0.65 +2.7
4,891,558 - +1.0
4,891,614 + +1.8
4,891,614 + +1.3
4,891,615 - -0.4
4,891,615 - +2.4
4,891,615 - -0.2
4,891,615 - -0.6
4,891,696 + JDDGAC_25600 0.21 +1.0
4,891,697 - JDDGAC_25600 0.21 +0.9
4,891,884 + JDDGAC_25600 0.48 +1.7
4,891,884 + JDDGAC_25600 0.48 +1.1
4,891,884 + JDDGAC_25600 0.48 +3.3
4,891,925 + JDDGAC_25600 0.54 +0.7
4,892,051 - JDDGAC_25600 0.72 +0.5
4,892,126 - JDDGAC_25600 0.83 +1.3
4,892,215 + -2.3
4,892,234 + +2.0
4,892,243 + +2.1

Or see this region's nucleotide sequence