Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25550

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
4,883,731	-		JDDGAC_25530	0.70	+0.0
4,883,808	+		JDDGAC_25530	0.81	+1.7
4,883,809	-		JDDGAC_25530	0.81	+1.9
4,883,866	+		JDDGAC_25530	0.89	+0.8
4,883,867	-		JDDGAC_25530	0.89	+1.8
4,883,867	-		JDDGAC_25530	0.89	+1.0
4,883,867	-		JDDGAC_25530	0.89	+3.7
4,883,895	+				+0.9
4,883,895	+				+3.3
4,883,896	-				-2.2
4,883,938	+				+1.0
4,883,955	-				+1.1
4,883,955	-				+0.5
4,883,955	-				+0.4
4,883,955	-				+3.7
4,884,059	+		JDDGAC_25535	0.67	+1.2
4,884,141	+				+0.3
4,884,187	+				+2.3
4,884,188	-				+1.5
4,884,281	+		JDDGAC_25540	0.26	+2.3
4,884,288	+		JDDGAC_25540	0.28	-0.2
4,884,318	+		JDDGAC_25540	0.39	+1.6
4,884,318	+		JDDGAC_25540	0.39	+1.2
4,884,319	-		JDDGAC_25540	0.40	+1.2
4,884,329	+		JDDGAC_25540	0.43	+0.8
4,884,330	-		JDDGAC_25540	0.44	-0.0
4,884,330	-		JDDGAC_25540	0.44	+1.3
4,884,331	+		JDDGAC_25540	0.44	+1.5
4,884,332	-		JDDGAC_25540	0.44	+0.1
4,884,332	-		JDDGAC_25540	0.44	+2.0
4,884,332	-		JDDGAC_25540	0.44	+0.6
4,884,367	-		JDDGAC_25540	0.57	+1.0
4,884,388	+		JDDGAC_25540	0.65	-0.4
4,884,388	+		JDDGAC_25540	0.65	+0.8
4,884,388	+		JDDGAC_25540	0.65	+0.4
4,884,388	+		JDDGAC_25540	0.65	+1.4
4,884,388	+		JDDGAC_25540	0.65	+1.9
4,884,389	-		JDDGAC_25540	0.65	+0.5
4,884,389	-		JDDGAC_25540	0.65	+0.7
4,884,392	+		JDDGAC_25540	0.66	+4.5
4,884,392	+		JDDGAC_25540	0.66	+2.1
4,884,392	+		JDDGAC_25540	0.66	+1.6
4,884,392	+		JDDGAC_25540	0.66	+0.7
4,884,393	-		JDDGAC_25540	0.67	+0.6
4,884,393	-		JDDGAC_25540	0.67	+2.1
4,884,393	-		JDDGAC_25540	0.67	+0.3
4,884,393	-		JDDGAC_25540	0.67	+1.7
4,884,394	+		JDDGAC_25540	0.67	+1.6
4,884,395	-		JDDGAC_25540	0.67	+0.5
4,884,485	-				-0.2
4,884,490	+				+1.9
4,884,491	-				+0.1
4,884,491	-				+1.3
4,884,518	+		JDDGAC_25545	0.16	+0.3
4,884,548	-		JDDGAC_25545	0.30	+1.3
4,884,575	+		JDDGAC_25545	0.43	+1.0
4,884,575	+		JDDGAC_25545	0.43	+0.1
4,884,576	-		JDDGAC_25545	0.43	+1.3
4,884,578	-		JDDGAC_25545	0.44	-0.6
4,884,578	-		JDDGAC_25545	0.44	+1.2
4,884,583	+		JDDGAC_25545	0.47	+1.5
4,884,583	+		JDDGAC_25545	0.47	+1.2
4,884,583	+		JDDGAC_25545	0.47	-0.6
4,884,616	+		JDDGAC_25545	0.62	+1.2
4,884,616	+		JDDGAC_25545	0.62	+0.1
4,884,616	+		JDDGAC_25545	0.62	+2.8
4,884,617	-		JDDGAC_25545	0.63	+2.2
4,884,670	+		JDDGAC_25545	0.88	+1.2
4,884,671	-		JDDGAC_25545	0.89	+1.2
4,884,685	+				+1.4
4,884,689	-				+1.5
4,884,742	-				+0.6
4,884,865	+		JDDGAC_25550	0.25	+0.9
4,884,949	+		JDDGAC_25550	0.37	+1.4
4,884,950	-		JDDGAC_25550	0.37	+0.4
4,884,971	+		JDDGAC_25550	0.40	+2.3
4,884,971	+		JDDGAC_25550	0.40	+1.4
4,884,996	+		JDDGAC_25550	0.43	+1.3
4,884,997	-		JDDGAC_25550	0.44	+2.1
4,885,004	+		JDDGAC_25550	0.45	+2.4
4,885,004	+		JDDGAC_25550	0.45	+1.5
4,885,005	-		JDDGAC_25550	0.45	+3.1
4,885,005	-		JDDGAC_25550	0.45	+4.3
4,885,062	+		JDDGAC_25550	0.53	+0.9
4,885,164	+		JDDGAC_25550	0.67	-0.9
4,885,191	+		JDDGAC_25550	0.71	+1.5
4,885,192	-		JDDGAC_25550	0.71	+1.1
4,885,260	+		JDDGAC_25550	0.81	-0.5
4,885,293	+		JDDGAC_25550	0.86	+0.6
4,885,294	-		JDDGAC_25550	0.86	+0.9
4,885,342	+				+3.3
4,885,353	+				+1.2
4,885,353	+				-0.1
4,885,355	+				+1.8
4,885,355	+				+1.0
4,885,468	+		JDDGAC_25555	0.29	+5.0
4,885,468	+		JDDGAC_25555	0.29	-0.2
4,885,493	-		JDDGAC_25555	0.38	+0.7
4,885,505	+		JDDGAC_25555	0.43	+1.7
4,885,506	-		JDDGAC_25555	0.43	+1.4
4,885,506	-		JDDGAC_25555	0.43	-0.1
4,885,558	+		JDDGAC_25555	0.61	+2.0
4,885,651	-				+0.7
4,885,655	-				+1.9
4,885,664	+				+1.5
4,885,772	+		JDDGAC_25560	0.33	+1.6
4,885,806	+		JDDGAC_25560	0.43	+1.3
4,885,821	+		JDDGAC_25560	0.48	+0.7
4,885,821	+		JDDGAC_25560	0.48	+0.6
4,885,821	+		JDDGAC_25560	0.48	+0.8
4,885,821	+		JDDGAC_25560	0.48	-0.6
4,885,821	+		JDDGAC_25560	0.48	-0.8
4,885,821	+		JDDGAC_25560	0.48	+0.8
4,885,821	+		JDDGAC_25560	0.48	+1.4
4,885,822	-		JDDGAC_25560	0.48	+1.4
4,885,822	-		JDDGAC_25560	0.48	+0.3
4,885,822	-		JDDGAC_25560	0.48	+1.4
4,885,822	-		JDDGAC_25560	0.48	+1.5
4,885,822	-		JDDGAC_25560	0.48	+1.3
4,885,822	-		JDDGAC_25560	0.48	+1.4
4,885,823	+		JDDGAC_25560	0.48	+1.7
4,885,823	+		JDDGAC_25560	0.48	+1.0
4,885,823	+		JDDGAC_25560	0.48	+0.9
4,885,823	+		JDDGAC_25560	0.48	+1.1
4,885,824	-		JDDGAC_25560	0.49	+1.3
4,885,824	-		JDDGAC_25560	0.49	-0.9
4,885,824	-		JDDGAC_25560	0.49	+1.8
4,885,824	-		JDDGAC_25560	0.49	+0.4
4,885,825	+		JDDGAC_25560	0.49	+0.7
4,885,825	+		JDDGAC_25560	0.49	+1.6
4,885,826	-		JDDGAC_25560	0.49	-0.3
4,885,826	-		JDDGAC_25560	0.49	+1.1
4,885,898	+		JDDGAC_25560	0.71	+1.3
4,885,898	+		JDDGAC_25560	0.71	+1.0
4,885,937	+		JDDGAC_25560	0.82	+0.7
4,885,938	-		JDDGAC_25560	0.82	+1.3
4,885,938	-		JDDGAC_25560	0.82	+1.8
4,885,964	+				-0.1
4,885,988	-				+1.1
4,886,003	+				-2.0
4,886,003	+				+2.6
4,886,004	-				+1.0
4,886,004	-				+1.7
4,886,014	+				+2.2
4,886,015	-				-0.7
4,886,056	+				+2.4
4,886,056	+				+1.5
4,886,133	+				+2.2
4,886,141	-				+2.7
4,886,143	-				+1.3
4,886,163	+				+1.8
4,886,203	+		JDDGAC_25565	0.14	+2.2
4,886,262	+		JDDGAC_25565	0.24	+1.5
4,886,262	+		JDDGAC_25565	0.24	+1.5
4,886,262	+		JDDGAC_25565	0.24	+2.9
4,886,368	+		JDDGAC_25565	0.42	+2.1
4,886,368	+		JDDGAC_25565	0.42	+2.0
4,886,369	-		JDDGAC_25565	0.42	+1.3