Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25470 and JDDGAC_25475 overlap by 4 nucleotides JDDGAC_25475 and JDDGAC_25480 overlap by 4 nucleotides JDDGAC_25480 and JDDGAC_25485 are separated by 2 nucleotides JDDGAC_25485 and JDDGAC_25490 are separated by 153 nucleotides
JDDGAC_25470: JDDGAC_25470 - recombinase RecT, at 4,876,628 to 4,877,569
_25470
JDDGAC_25475: JDDGAC_25475 - exodeoxyribonuclease VIII, at 4,877,566 to 4,878,387
_25475
JDDGAC_25480: JDDGAC_25480 - hypothetical protein, at 4,878,384 to 4,878,683
_25480
JDDGAC_25485: JDDGAC_25485 - hypothetical protein, at 4,878,686 to 4,878,838
_25485
JDDGAC_25490: JDDGAC_25490 - transcriptional regulator, at 4,878,992 to 4,879,576
_25490
Position (kb) 4878
4879 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4877.456 kb on + strand, within JDDGAC_25470 at 4877.503 kb on + strand at 4877.569 kb on + strand at 4877.570 kb on - strand at 4877.570 kb on - strand at 4877.570 kb on - strand at 4877.570 kb on - strand at 4877.573 kb on + strand at 4877.573 kb on + strand at 4877.573 kb on + strand at 4877.574 kb on - strand at 4877.574 kb on - strand at 4877.578 kb on - strand at 4877.578 kb on - strand at 4877.638 kb on + strand at 4877.654 kb on + strand, within JDDGAC_25475 at 4877.654 kb on + strand, within JDDGAC_25475 at 4878.087 kb on + strand, within JDDGAC_25475 at 4878.103 kb on + strand, within JDDGAC_25475 at 4878.103 kb on + strand, within JDDGAC_25475 at 4878.104 kb on - strand, within JDDGAC_25475 at 4878.135 kb on + strand, within JDDGAC_25475 at 4878.136 kb on - strand, within JDDGAC_25475 at 4878.282 kb on + strand, within JDDGAC_25475 at 4878.324 kb on + strand at 4878.497 kb on + strand, within JDDGAC_25480 at 4878.498 kb on - strand, within JDDGAC_25480 at 4878.538 kb on - strand, within JDDGAC_25480 at 4878.606 kb on + strand, within JDDGAC_25480 at 4878.606 kb on + strand, within JDDGAC_25480 at 4878.607 kb on - strand, within JDDGAC_25480 at 4878.607 kb on - strand, within JDDGAC_25480 at 4878.607 kb on - strand, within JDDGAC_25480 at 4878.607 kb on - strand, within JDDGAC_25480 at 4878.607 kb on - strand, within JDDGAC_25480 at 4878.751 kb on + strand, within JDDGAC_25485 at 4878.751 kb on + strand, within JDDGAC_25485 at 4878.764 kb on + strand, within JDDGAC_25485 at 4878.838 kb on + strand at 4878.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,877,456 + JDDGAC_25470 0.88 -0.2 4,877,503 + -0.0 4,877,569 + +0.8 4,877,570 - +3.0 4,877,570 - +1.0 4,877,570 - -0.1 4,877,570 - +1.9 4,877,573 + +1.2 4,877,573 + +0.4 4,877,573 + -0.7 4,877,574 - +0.5 4,877,574 - +0.3 4,877,578 - +3.0 4,877,578 - -0.4 4,877,638 + +0.8 4,877,654 + JDDGAC_25475 0.11 +1.0 4,877,654 + JDDGAC_25475 0.11 +0.9 4,878,087 + JDDGAC_25475 0.63 +0.5 4,878,103 + JDDGAC_25475 0.65 +0.2 4,878,103 + JDDGAC_25475 0.65 +1.5 4,878,104 - JDDGAC_25475 0.65 +0.6 4,878,135 + JDDGAC_25475 0.69 +0.6 4,878,136 - JDDGAC_25475 0.69 +2.1 4,878,282 + JDDGAC_25475 0.87 +1.7 4,878,324 + -0.7 4,878,497 + JDDGAC_25480 0.38 +1.9 4,878,498 - JDDGAC_25480 0.38 +0.7 4,878,538 - JDDGAC_25480 0.51 +3.5 4,878,606 + JDDGAC_25480 0.74 -0.8 4,878,606 + JDDGAC_25480 0.74 -1.1 4,878,607 - JDDGAC_25480 0.74 +4.3 4,878,607 - JDDGAC_25480 0.74 +1.1 4,878,607 - JDDGAC_25480 0.74 -0.5 4,878,607 - JDDGAC_25480 0.74 -0.5 4,878,607 - JDDGAC_25480 0.74 +1.3 4,878,751 + JDDGAC_25485 0.42 +1.7 4,878,751 + JDDGAC_25485 0.42 +0.1 4,878,764 + JDDGAC_25485 0.51 -0.8 4,878,838 + -0.9 4,878,994 - +1.1
Or see this region's nucleotide sequence