Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqeI and JDDGAC_23565 are separated by 120 nucleotides JDDGAC_23565 and yqeH are separated by 70 nucleotides yqeH and yqeG are separated by 459 nucleotides
JDDGAC_23560: yqeI - Uncharacterized protein YqeI, at 4,508,728 to 4,509,537
yqeI
JDDGAC_23565: JDDGAC_23565 - hypothetical protein, at 4,509,658 to 4,509,789
_23565
JDDGAC_23570: yqeH - Uncharacterized protein YqeH, at 4,509,860 to 4,510,492
yqeH
JDDGAC_23575: yqeG - Inner membrane transport protein YqeG, at 4,510,952 to 4,512,181
yqeG
Position (kb) 4509
4510
4511 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4509.068 kb on - strand, within yqeI at 4509.174 kb on + strand, within yqeI at 4509.197 kb on - strand, within yqeI at 4509.200 kb on - strand, within yqeI at 4509.217 kb on - strand, within yqeI at 4509.217 kb on - strand, within yqeI at 4509.274 kb on - strand, within yqeI at 4509.313 kb on + strand, within yqeI at 4509.325 kb on + strand, within yqeI at 4509.337 kb on - strand, within yqeI at 4509.337 kb on - strand, within yqeI at 4509.459 kb on + strand at 4509.471 kb on + strand at 4509.471 kb on + strand at 4509.592 kb on - strand at 4509.765 kb on + strand, within JDDGAC_23565 at 4509.801 kb on - strand at 4510.124 kb on - strand, within yqeH at 4510.330 kb on + strand, within yqeH at 4510.330 kb on + strand, within yqeH at 4510.462 kb on + strand at 4510.730 kb on - strand at 4510.869 kb on + strand at 4510.896 kb on + strand at 4510.950 kb on + strand at 4510.954 kb on - strand at 4511.047 kb on - strand at 4511.152 kb on + strand, within yqeG at 4511.171 kb on - strand, within yqeG at 4511.171 kb on - strand, within yqeG at 4511.222 kb on + strand, within yqeG at 4511.269 kb on - strand, within yqeG at 4511.273 kb on - strand, within yqeG at 4511.353 kb on + strand, within yqeG at 4511.353 kb on + strand, within yqeG at 4511.401 kb on + strand, within yqeG at 4511.416 kb on + strand, within yqeG at 4511.453 kb on + strand, within yqeG at 4511.454 kb on - strand, within yqeG
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,509,068 - yqeI JDDGAC_23560 0.42 -2.0 4,509,174 + yqeI JDDGAC_23560 0.55 -0.0 4,509,197 - yqeI JDDGAC_23560 0.58 -1.6 4,509,200 - yqeI JDDGAC_23560 0.58 +0.5 4,509,217 - yqeI JDDGAC_23560 0.60 +0.2 4,509,217 - yqeI JDDGAC_23560 0.60 +0.4 4,509,274 - yqeI JDDGAC_23560 0.67 -2.0 4,509,313 + yqeI JDDGAC_23560 0.72 +0.1 4,509,325 + yqeI JDDGAC_23560 0.74 +0.3 4,509,337 - yqeI JDDGAC_23560 0.75 -1.0 4,509,337 - yqeI JDDGAC_23560 0.75 +2.0 4,509,459 + +0.1 4,509,471 + +1.0 4,509,471 + -0.1 4,509,592 - +0.6 4,509,765 + JDDGAC_23565 0.81 -0.1 4,509,801 - -0.5 4,510,124 - yqeH JDDGAC_23570 0.42 +0.4 4,510,330 + yqeH JDDGAC_23570 0.74 +0.0 4,510,330 + yqeH JDDGAC_23570 0.74 +1.8 4,510,462 + +1.2 4,510,730 - +2.1 4,510,869 + -2.3 4,510,896 + +2.5 4,510,950 + +1.6 4,510,954 - -1.2 4,511,047 - +0.0 4,511,152 + yqeG JDDGAC_23575 0.16 -0.2 4,511,171 - yqeG JDDGAC_23575 0.18 +1.3 4,511,171 - yqeG JDDGAC_23575 0.18 -1.9 4,511,222 + yqeG JDDGAC_23575 0.22 +0.9 4,511,269 - yqeG JDDGAC_23575 0.26 -0.6 4,511,273 - yqeG JDDGAC_23575 0.26 +1.2 4,511,353 + yqeG JDDGAC_23575 0.33 -0.3 4,511,353 + yqeG JDDGAC_23575 0.33 -0.0 4,511,401 + yqeG JDDGAC_23575 0.37 -0.3 4,511,416 + yqeG JDDGAC_23575 0.38 -0.0 4,511,453 + yqeG JDDGAC_23575 0.41 +0.3 4,511,454 - yqeG JDDGAC_23575 0.41 -0.1
Or see this region's nucleotide sequence