Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23510

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_23500 and ygeI are separated by 186 nucleotidesygeI and JDDGAC_23510 are separated by 261 nucleotidesJDDGAC_23510 and JDDGAC_23515 are separated by 604 nucleotides JDDGAC_23500: JDDGAC_23500 - Transglycosylase SLT domain-containing protein, at 4,500,908 to 4,501,309 _23500 JDDGAC_23505: ygeI - Uncharacterized protein YgeI, at 4,501,496 to 4,501,714 ygeI JDDGAC_23510: JDDGAC_23510 - Transcriptional regulator, at 4,501,976 to 4,502,341 _23510 JDDGAC_23515: JDDGAC_23515 - IS66-like element ISEc8 family transposase, at 4,502,946 to 4,504,484 _23515 Position (kb) 4501 4502 4503Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4501.276 kb on + strandat 4501.413 kb on + strandat 4501.630 kb on + strand, within ygeIat 4501.808 kb on + strandat 4501.848 kb on - strandat 4502.004 kb on + strandat 4502.004 kb on + strandat 4502.005 kb on - strandat 4502.005 kb on - strandat 4502.128 kb on - strand, within JDDGAC_23510at 4502.130 kb on + strand, within JDDGAC_23510at 4502.146 kb on + strand, within JDDGAC_23510at 4502.160 kb on - strand, within JDDGAC_23510at 4502.230 kb on + strand, within JDDGAC_23510at 4502.258 kb on + strand, within JDDGAC_23510at 4502.835 kb on - strandat 4502.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,501,276 + -0.9
4,501,413 + -0.0
4,501,630 + ygeI JDDGAC_23505 0.61 +0.2
4,501,808 + -0.2
4,501,848 - +0.3
4,502,004 + +0.4
4,502,004 + -0.9
4,502,005 - +0.0
4,502,005 - -0.3
4,502,128 - JDDGAC_23510 0.42 +1.2
4,502,130 + JDDGAC_23510 0.42 +0.1
4,502,146 + JDDGAC_23510 0.46 +3.1
4,502,160 - JDDGAC_23510 0.50 +0.6
4,502,230 + JDDGAC_23510 0.69 +0.7
4,502,258 + JDDGAC_23510 0.77 +0.5
4,502,835 - -0.4
4,502,893 + -2.2

Or see this region's nucleotide sequence