Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt plsC and ftsP are separated by 74 nucleotides ftsP and ygiQ are separated by 110 nucleotides
JDDGAC_22540: plsC - 1-acylglycerol-3-phosphate O-acyltransferase, at 4,314,140 to 4,314,877
plsC
JDDGAC_22545: ftsP - cell division protein FtsP, at 4,314,952 to 4,316,364
ftsP
JDDGAC_22550: ygiQ - YgiQ family radical SAM protein, at 4,316,475 to 4,318,694
ygiQ
Position (kb) 4314
4315
4316
4317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4313.982 kb on + strand at 4313.983 kb on - strand at 4313.983 kb on - strand at 4314.028 kb on - strand at 4314.050 kb on + strand at 4314.075 kb on - strand at 4314.105 kb on + strand at 4314.105 kb on + strand at 4314.106 kb on - strand at 4314.106 kb on - strand at 4314.875 kb on + strand at 4314.891 kb on - strand at 4314.920 kb on + strand at 4314.924 kb on - strand at 4315.128 kb on + strand, within ftsP at 4315.213 kb on - strand, within ftsP at 4315.913 kb on + strand, within ftsP at 4316.363 kb on - strand at 4316.363 kb on - strand at 4316.399 kb on + strand at 4316.400 kb on - strand at 4316.429 kb on - strand at 4316.430 kb on + strand at 4316.430 kb on + strand at 4316.430 kb on + strand at 4316.431 kb on - strand at 4316.431 kb on - strand at 4316.431 kb on - strand at 4316.431 kb on - strand at 4316.483 kb on + strand at 4316.484 kb on - strand at 4316.529 kb on + strand at 4316.637 kb on + strand at 4316.637 kb on + strand at 4316.638 kb on - strand at 4316.678 kb on + strand at 4316.679 kb on - strand at 4316.679 kb on - strand at 4316.679 kb on - strand at 4316.819 kb on + strand, within ygiQ at 4316.837 kb on - strand, within ygiQ at 4316.837 kb on - strand, within ygiQ at 4316.853 kb on + strand, within ygiQ at 4316.853 kb on + strand, within ygiQ at 4316.904 kb on + strand, within ygiQ at 4316.904 kb on + strand, within ygiQ at 4316.907 kb on - strand, within ygiQ at 4316.918 kb on + strand, within ygiQ at 4316.918 kb on + strand, within ygiQ at 4316.938 kb on + strand, within ygiQ at 4316.988 kb on + strand, within ygiQ at 4316.988 kb on + strand, within ygiQ at 4316.994 kb on + strand, within ygiQ at 4317.116 kb on + strand, within ygiQ at 4317.264 kb on - strand, within ygiQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,313,982 + +0.9 4,313,983 - -0.9 4,313,983 - -1.4 4,314,028 - -0.5 4,314,050 + -0.1 4,314,075 - -0.4 4,314,105 + -0.2 4,314,105 + -0.1 4,314,106 - +0.6 4,314,106 - -2.5 4,314,875 + -1.4 4,314,891 - -0.8 4,314,920 + -0.8 4,314,924 - -0.4 4,315,128 + ftsP JDDGAC_22545 0.12 +0.9 4,315,213 - ftsP JDDGAC_22545 0.18 +1.5 4,315,913 + ftsP JDDGAC_22545 0.68 +3.3 4,316,363 - +0.7 4,316,363 - +0.1 4,316,399 + -1.1 4,316,400 - -0.1 4,316,429 - +0.5 4,316,430 + -1.9 4,316,430 + +0.3 4,316,430 + -0.9 4,316,431 - -0.4 4,316,431 - +0.1 4,316,431 - +1.1 4,316,431 - +1.3 4,316,483 + -0.5 4,316,484 - -1.5 4,316,529 + +0.0 4,316,637 + -0.2 4,316,637 + -2.0 4,316,638 - +0.7 4,316,678 + -0.5 4,316,679 - +0.5 4,316,679 - -1.0 4,316,679 - -0.8 4,316,819 + ygiQ JDDGAC_22550 0.15 +0.6 4,316,837 - ygiQ JDDGAC_22550 0.16 -1.1 4,316,837 - ygiQ JDDGAC_22550 0.16 -0.9 4,316,853 + ygiQ JDDGAC_22550 0.17 +1.2 4,316,853 + ygiQ JDDGAC_22550 0.17 +0.4 4,316,904 + ygiQ JDDGAC_22550 0.19 -1.0 4,316,904 + ygiQ JDDGAC_22550 0.19 -1.1 4,316,907 - ygiQ JDDGAC_22550 0.19 +0.2 4,316,918 + ygiQ JDDGAC_22550 0.20 -2.8 4,316,918 + ygiQ JDDGAC_22550 0.20 -0.9 4,316,938 + ygiQ JDDGAC_22550 0.21 -0.1 4,316,988 + ygiQ JDDGAC_22550 0.23 +0.2 4,316,988 + ygiQ JDDGAC_22550 0.23 -0.5 4,316,994 + ygiQ JDDGAC_22550 0.23 +0.3 4,317,116 + ygiQ JDDGAC_22550 0.29 -0.1 4,317,264 - ygiQ JDDGAC_22550 0.36 -1.3
Or see this region's nucleotide sequence